Array 1 9660-9236 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000021.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9659 29 86.2 36 GA.............A............G GCTGGAATTAATGCGACTACAGTAGAAGAAAAGAAA 9594 29 100.0 38 ............................. GTTCATTTGTATTTCTTCCAATTTTCTGTTCTATCCTA 9527 29 96.6 37 G............................ AATATAACAAAGTGGATGTTCTCTAAAAATAAAGAGG 9461 29 89.7 37 G.....G.....................G GTTTGAGAACGCTGTATAAAGCTTGTAGCTAGTTCTT 9395 29 89.7 37 G..............A............G GTTGCATCATTAAATATTTTCCCTACAAACTCTTTTC 9329 29 100.0 37 ............................. AGTACATACAAAGAGTCTATAAAATTATCTATAAAGG 9263 28 82.8 0 G...................AC.-....A | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 92.1 37 ATTTTATATTAACTATGTGGTATGTAAAT # Left flank : TTACACAATGTCTAATAAACCAGCATTTATGGCAGTTAAGCAAATTATAAGAAAGCTTGATATTAAAGAAGATGAAATGAAAACAGTATTAGAAACGAATGGCAATTGGACTGGTACTGTAACAAAATATTCTAATAAGGTTACAGAAAAGGTCAAAGTGTGGTTGAAAGAAAATAATAATCCTATCTCAATCAAAGGAGACAAGAAAAACTACTATATATTGTATAAAAATAATTAGATTTTAGTTTTTGGGGGGGTAATACAATGTATGAGAATTTACTTGATAGTATAGATATTGAAAAGAGAAAAGAAGAATTTAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGAGTAGTATATAAACTTTCTGAGAAAAAAATTAGAGAAAAATAATTAAATAAATAGATAAAGCACTTGGATATTATGTTGTTTCAAGTGCTTTATTTGGTATAAAATGGTATAATGGAAGTAGG # Right flank : TTAAAAATAATTCAAAAACACTTACAAATGAGTAAGTGCTTTTTTAATTGAAAGGAGGTGATTATGATGTAAAAATTTTACTAATATAGTATAATAATCTTATAAAATTGCGTAGGGGGTAATATTATGGGATTATTTGGAGGTAAAGAACCATGTTGCATATGTGGAGGAAAGGGTAAAAATAAAGTTTTAGAAAATGAATATCTGTGCAATAATTGCTTTGTTGATTTTACGATATTCTCTAGTGAAAGATTAAAAACAACTAGTGCAATGCAAGTATTAGCAGACCATGAAGGAATAAGAAAGTTTATAAATTTTTCTAAGAAAAATAGAGAACTATTAGAAAAATTTGTTGAGACAAATAAAATTAATAAATTCATATCAATTGATGAAAATAATAAATTTATTAAAATATCAGATATTCGTAAAGGCGGAGATATAATAGAAACCGTATATGCAACTGATGAAATTATAGAGTTTGAACTTTTAGAAGATGAAGA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 11817-11261 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000021.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 11816 29 100.0 37 ............................. TTACTAGAAGGAACATCAAAAGGAGGTTTAAAATCCG 11750 29 100.0 37 ............................. CCAACTAGGTGAAAGAAGTTTACCCAAAATATCACCC 11684 29 100.0 37 ............................. GTTACAGAAAAAAGTATAACAGAAGCTTCTAATATAG 11618 29 93.1 38 ......T.....................G CTTTATCATCTAAAGCTATTACACTAAATCTTAGACAC 11551 29 93.1 35 A.....T...................... ACTGAAAACATAAAAGATGCTATGATTAGAGTAAG 11487 29 93.1 37 ................A...A........ GAATTTTCAACACGCTGTGCTATCTTAGTTACTCCTA 11421 29 89.7 38 ......T.........A...A........ ACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGG 11354 29 93.1 36 T.....T...................... TCTTTATAAGTTACCTATATATTTAACCACTTCGTC 11289 29 79.3 0 ......T............AAT.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 93.5 37 GTTTTAGATTAACTATGTGGTATGTAAAT # Left flank : TATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCAATATTTGCGATAAATTGAAGTTTAACAATTGGAATACAAGGTATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGATGCGTATGTGTAGGTATTGGAAATGCCAAGTTTATTTTGGG # Right flank : TAAATAGAAAAAAGAAAGCACTTACTTAAATAGTAGGTGCTTTTGTTTTGCTTATAGCTTTTCATCATCTTCATATTCCATAATATCTCCTGGTTGACAGTCTAAAGCTTTACATATTTTATCAATAACATCAAGGGAAACATTTTTATTTGAAGATAATTTTGCTATTGTGGTAGAAGAAGCTCCTATTTTTAATCTTAGTTCTTCTTTAGTTATACCTCTTCTGTTTAGTAAGTTAATTAGTTTGAAAAATTTTATAGACATGTTAATACCTCCTATATATTTATATAATACTATATATCTTTATTAAAGTAAATATATATTTATTAAAATAAATAAAGAGTATTGACATTATTTACTAAATAATGTATTATTAGAATATAAAGATAAAGAAATCTTTATAAAGATAAAGTAATAAGGGATAAAATAAGGAATATTCTCTCTCGTCAAAGTTTAAATATTCCTTATGACATATAACTAATATGTAATATAATTATATG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 32263-31250 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000006.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 32262 29 100.0 38 ............................. GAGTGTGGAAGTGATGAACTTGGAGAAGGTGAAGGAAG 32195 29 100.0 37 ............................. AGGTATACACCTTCTACTCTTGTAAGAGTACCATAAG 32129 29 100.0 36 ............................. TCAAAATTATTTAGTTATACTAAACATTATATTATA 32064 29 100.0 38 ............................. TGAAACAAAATGCTGATGCAAGAAAAGAAAGTATCCGT 31997 29 100.0 36 ............................. CGAATTTCATGGCTTTGAATTTATTTATATGTAGTT 31932 29 100.0 37 ............................. CCAATTAAGTTACTAGATAAAAAAATAGAACAAATTA 31866 29 100.0 37 ............................. ACAAAAAAACGTATAATAAAAATAATTTCTATCTCTG 31800 29 100.0 36 ............................. CATATTCTTCATTTATCCCTATTCTATCTAATATTT 31735 29 100.0 37 ............................. TTTAAAAGGTCAACTTAAAGGTAGTAATTTTTTAATA 31669 29 100.0 37 ............................. TATCAAAAAATCCCCTCACCTGCATACTTGTATAAAT 31603 29 100.0 36 ............................. CCTGTATTCTGTTTAATGCTTCAATAGCTCTTTCTT 31538 29 100.0 36 ............................. TATCTAAAACCCAATAGGATTGACACGTTACGACCG 31473 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 31407 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 31342 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 31278 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 96.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : AAAATACACTTACCTACAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAGTAAAGATATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGATTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAGTATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 332976-333398 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000002.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 332976 29 100.0 37 ............................. TTATTAAACCTCTCCTTATATTTCTTCCATTTTTCGA 333042 29 100.0 36 ............................. AGAGAGATAAGGCAAATAATCTGTAACAACTCCAAA 333107 29 100.0 37 ............................. ATAGTCCTTTTCTAAATTTAGAATCAAGTTTTGGAGT 333173 29 100.0 36 ............................. AGAGTAAAACAATAGTACAAGAACAAATAAATACAT 333238 29 100.0 37 ............................. TAACTTTATAAAACCCAGTAATTGCAACACTTTTATA 333304 29 96.6 37 .......................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 333370 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 95.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTATAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGAGCTTAACGCTTGAAATATAAAGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCATATGTGTAAGTATTGAAAATGCCCAGTTTATTTGGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTATATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTTTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTCGCATCATTTAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 113362-112936 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000001.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 113361 29 100.0 37 ............................. TTAAATCGTTTGATTGGAAGTATAAATTATAATGACC 113295 29 100.0 37 ............................. GCTGAAAGTTTAAAAGTTTTAACTATAAATTCAGTTG 113229 29 100.0 36 ............................. TCTTTTTCTAATGCTTTTTTTACATATGGAGCTAAC 113164 29 100.0 37 ............................. AAAGAACTTTTAAGAAGAATGTTACTTGCAGGAGAAA 113098 29 100.0 37 ............................. AGGAGATAACTTCTATTAAAGATAACTTTGATGTGGT 113032 29 100.0 39 ............................. CTCAAAGTTGGACTAGCTTCATCTTTTAATTTTACAAGT 112964 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGGAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGTATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTATAATTTTTTTTAAGGTGTTATTTTATGATTATATAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAATATAGAAATCTTATCACCTTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAATATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 196197-197212 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000001.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 196197 29 100.0 37 ............................. TTCTAAATCTTTGTTTTTTTCTATTTGAGCAAATTCA 196263 29 100.0 36 ............................. TAACCTCTCCTGTACGTTTATCTATGTACTCATTAG 196328 29 100.0 36 ............................. CTCTTTAGCGCTTCTTCAAGTTGTATTTGTGTATAA 196393 29 100.0 36 ............................. TTTTTTAACTTTTCAGTTCTCACAGGCGTTTCATCT 196458 29 100.0 36 ............................. TTCATATTCCAAGCGTTTTGCTTACACTTAATAGAA 196523 29 100.0 38 ............................. AAAATTAAATTTCATGCTCTTAGACATACATATGCAAC 196590 29 100.0 36 ............................. TAGATTGCTTTCAAATTACCTCTTGTATAGCGTCTT 196655 29 100.0 37 ............................. CTTTTTTTATTAGTGAAAGGGGGTGGTTAAAATTAAA 196721 29 100.0 37 ............................. TTGCTCCGCTATGCCTTGCGCTCTCTAATATCGCTTA 196787 29 100.0 40 ............................. GGTTTTAAAGACCCAGCAACGATAAAACAATATGTTGCAA 196856 29 100.0 35 ............................. TGAACTTTAATCGGTTTTATACAACAATATAACGC 196920 29 100.0 38 ............................. AATGAAGGTATAATAAAATTAACAGAAGAAACAAGAGA 196987 29 100.0 37 ............................. TCACACATGAGCAATATCGAAACAGGCAAATCTACAG 197053 29 100.0 36 ............................. TTCGTAAAATAACAATTATCTGGAATATGAGAAGTT 197118 29 100.0 37 ............................. TCAATATCTATATTAAGTTTATTTTTAAAAACATCTT 197184 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ======================================== ================== 16 29 99.8 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTATCCTTTAAAATATAATTATTTTTTAGCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 523872-523646 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000001.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523871 29 100.0 36 ............................. AAACGATTGTTACACCAGTTTAGTATCTAGTTTTAA 523806 29 100.0 37 ............................. TTACTAAACATCTTATAACTTCTCTGAGAGCCTCTAG 523740 29 100.0 37 ............................. AGAGGCAACTAATTGCTTATGAGTCTGCTAGTCTTAA 523674 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 99.2 37 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGGAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGCTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGATAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATCAATTGCAATATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGA # Right flank : TTTTTATTACATTAAAAACAATTCTCCCAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATGATTGTGTTAGATATGGCTGAAAGTGATAATGTATATAAAAAAGAGTTAAAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 872648-871896 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000001.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 872647 29 100.0 36 ............................. TAATAAGGGTGTTATAAACTCATTTTTTTAACTTGG 872582 29 100.0 36 ............................. AAATGAATAAATCTTGTGTCATCACACACCAGACCT 872517 29 100.0 36 ............................. TTGCTACAACGATATAGATTAAATTTAGGAGGATAC 872452 29 100.0 37 ............................. AGTTTAAGTGATGCTTATTTTGTAAAAAGTACGACAG 872386 29 100.0 36 ............................. TTTATCTTTTTTAAAGACTATAGTAAAAAAATAATA 872321 29 100.0 40 ............................. AGGCAAATTAGTCAAGTGCTTTGGATATAAAAAGTTTCTG 872252 29 100.0 37 ............................. AAATTCGACGGAGAACTTTTATCTAATAAAGAAAAAC 872186 29 100.0 37 ............................. GAGAAAATTTCAGAATGGTTTAATGCAGTAGTAGAAA 872120 29 100.0 36 ............................. ATGCACAATTCAAATTATAAAGATGACTTGCAGAAA 872055 29 100.0 37 ............................. TATTCTTTTGCCAACTTTATTCCATTATTCAAATCTT 871989 29 96.6 36 ............................C TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 871924 29 86.2 0 ................G....T.CA.... | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 98.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : GTTGAAAATTTAGAATTCAATGAATTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGCTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTATTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGATGTATACTATCGTATATCAATTATAATATATGTCATTCCTTAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 6271-6629 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000003.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6271 30 100.0 37 .............................. TTGTTGGCAAAATTAACTTTAAACATTCTTTCACTGA 6338 30 100.0 37 .............................. ATCGCCCCTTGCACATTCGTAGCAGTAAGCTTGCTTG 6405 30 100.0 35 .............................. TGCTATCTATTAGTTTTTTAAAACTGTTCTCTCTG 6470 30 96.7 35 .................C............ CATGCTCCACCGCCTACAACATAAAGATTTTGCGT 6535 30 96.7 35 .................C............ TTTCTTTGTTGATTATAACTATTTTACTATAAAAA 6600 30 90.0 0 ................TT........A... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.2 36 ATTAAACCTTAACACTAAGTGTATTTGAAC # Left flank : ATAAATTCTATAATTTTTTTCAAGAATCTAAAATATATTTCTCTATAAATGTTTATTTACAACTTTAAATTAGATTCTTATAATTTAATTGCTGTAAGATATAAATTATATAACTGCTCTTTAGTTAAGTTAAGCTCACCCCATCTTACATCTTTAAGCAACACTCTTGTCGCTTTACTACTTCTATGCACATCTCATAATTTTGTTTTTTTCATTTCTTAATTCCCAGGGATTTCTTTTTATCCCATTTAAACTTATTCCATATATATCCCTCTTTTCAATATTATTTTTATAAAATTTACATCATTTTTATTGTTTATATTAAATATTGTAAATTTATTTATATAGTGATATAATCAAATTATCCCAAGTTAATTTATATAGACTTTGAAATATCTATATTCTTATTTTTAATTGTTAGTTGGGATAAAAGACTTAAATTAATTGAAATTACTATATTTCAAGTATTTATTAATTTTAGGAATGGCTTGTTTACAGCT # Right flank : CAACGCCAATAAAAGTGGTTCAAAAAAAAGCTATCTAAATTAACAGATAGCTCTTTTTAAATTATTGAAATCCTTTTAAAAATTTAAGATATATTTTCCTATAGACATTTCTACCTAATCTCAGGTCAACCCTTCACCTTCATTATAAATTCTTCTTTAGTAATACCTCTTTCAAAAATAAATAATCTAAAATCTTACATATTGAAGAGCAAATCTATTTTGATTAACTGCAATAATGCGCAAGTTATATATCTGCTCTTTAGTTAAGTTAGGCTCATTAAACTCCACGCACATCTCATAGGTTTATTTCTTTACTTGCATTAATTCCCATGGGAATTTTTTTATTTTATCTAAGCCTATTTCCTTCATCTATCTTTCCCCTCTTTAATTTTATTTTTATAACACTTTTATTATAGTATTTTTAATTATTTTTATATTAAGATATTTTATTTTCTTAGGTTTGTGGTATAATGAAAGCAAGAAGAACTACAATCTATTTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTAAGTGTATTTGAAC # Alternate repeat : ATTAAACCTTAACACTACGTGTATTTGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 9820-10047 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000003.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 9820 30 100.0 36 .............................. CTTTTTAGAAGAATACACACTTTTTTAATATTTCAT 9886 30 100.0 36 .............................. CATGCTAAGAAGCGTTTATTAACCAGTCTTGATAAT 9952 30 93.3 36 .................TG........... CTAAAATATTAATTTCTTTATTTAAAGGATTTTGAG 10018 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 98.3 36 ATTAAACCTTAACACTACATGTATTTAAAT # Left flank : ACGTACTCTAAAGCCAATCCATTTTGCCTTACTGCTATTGAATATATATGATAAATTTCTCCTCTTGAAAATTTTTGTTTTAATTTTTCATATTTTATATATTCTAAAGCTAATCCATTTTTTCTTACTGCTTCTATATATAGACTCTTAAGTTGTTTTTTGGTTAAGTCAATATCATCCAAATTTAAGTGAGATAAACATCTCCAATATCGCTGAATCTCTTTAAAATAAAATACATAGTTTTTATTATCTATATTTTTTATAATATCCCCACCTTTTTTATTTTTATATAATATATTATATCATTTATGTTGTTTATATAAAATATTGTAAGTTAATTTATTTAGTGGTATAATTAGTTTATCCCAATCTAATTGATGTATATGTTGAAACACCTACATTATTATTTTTGACTTTCGGTTGGGATAAAAAACTTAAAATAATTGAAATTGCAATATTGTAATCATTTTTTAATTTTGAGAAATGACTTGTTTACAGTC # Right flank : TAATAATAATAATATGTAATTTGAAACATAGGCAAACGTAGTTGGGGATATCTAAATTAAAAGATATCCCCAACAAATCAAATCTATCATCTTTATTTTTTATATACTTAATTATTAGTTATTAACTCATATTACTTATGTGTGAATTCATCGATTATCATTTCAACTTCTGCCCTTAATACTGCTAAATTAATTCCCCTTTAACAATTCCATTCATATTTACACCTCTTCAAATCTATATTTTTGAATAACATTAGGATATTTTTCTTTATCTACTTTAAATAAAAACATTTCAATAGGTCTTACGATGATAAAAGTTGCCTTTATCATCTTTATATATAATCATATCCTCATTTGTTTCTGTATGACAAGAAGAAAATCTATAATCAAATATATCTAATCTATCCCAACAACCTAAACTTTCAAAAACATTGTAAAGTTCATTGTCGGCAACAGGTATGCTAATTCCCATAACTATATAAAATTATTGTTTTAATTTA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTACATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 278284-279070 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000003.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================== ================== 278284 30 100.0 36 .............................. CAAGCTATTATTTTCAAGCTGCATCCTGCTACTTAT 278350 30 100.0 37 .............................. TGGTAGCCGAGAATACGATTTTTACAGATATACAAAG 278417 30 100.0 36 .............................. TCAGTTTCTATTTCTGTTCCACCCTTTAGGTCAAGT 278483 30 96.7 19 .............................T GGGATAACAATATAATATA Deletion [278532] 278532 30 76.7 36 T..TC..T.........TAC.......... TAACGATTTGTATTTATTTTATTGTTACTTACATCA 278598 30 96.7 35 .................T............ GCCAATGCAGAAAGTGAACCTCTGTGCAATATAGC 278663 30 90.0 91 ...T............TT............ TCAGCTAAACCTACTATCTTTGGCTAAAATATAGAGATTAAACCTTAACAATAAAAAAGAAGCTTCTATAGAGCCTCTTGAAGCTTACAGT 278784 30 80.0 31 .A.T.....A......TT...........G GAGATGTTTTAGAATATGATACAATAACAGA 278845 30 86.7 27 .A.T............G............T TAGCAACTACACAAAGATATATAAGAA T [278847] Deletion [278903] 278903 30 90.0 42 ...............C.T...........T AGGGGTGGAGGGCCGTTTCTTGAGTTCACCAAACCGAAACAT 278975 30 96.7 36 ..C........................... AACCATTTATCTCTATATCCTGTCATTATTTTATTA 279041 30 90.0 0 ................TT...........A | ========== ====== ====== ====== ============================== =========================================================================================== ================== 12 30 92.0 39 ATTAAACCTTAACACTACGTGTATTTAAAC # Left flank : TTTTAATGACGAATTAGATATCGACATTGTTAAATTGCAGTTGGAAGCTATAAAAGAAGAAATACAAGAATCTGTTTTAAGAGGAAATTTTGACATTAAAGATTACACAAAATTTTATATAAATGAATTAAAATTTACCGAAGTTGTTAGCATAGAAATAAAGGAAGAATTTCAAAACTTTATTGATTCTTGTACAAAGCAATATATGCCAGTTATTTTTGATTAAACCTTAATACTTTGTGTATTTAAACTAACGACTTGTATCTATTTTATTGTTACTTACATCAATTAAACCTTAACACTATATTTTTATTGTTTATATAAAATATTGCAAGTTAATTTATATAATGATATAATTAATTTATCCCAAGTTAATTGATATAGACTTTGAAATATCTACATTCTTATTTTTAACTATTAGTTGGGATAAAAAACTTAAAACAATTGAAATTGCTGTCTTGTAAGCATCTCTTAATTTTGGGAATGGCTTATTTACAGCT # Right flank : AGTTAGGATAATATTATGTTTTATATAAATACTATAATATATATAGTATTTATTAGTTATATTAGATTTCTGTACATAACTCTTAGTGGAGAAGACTTCTGGAATTTTGCCATTTTGGTATATGTACTTTATAAAACTGTAAAACACTGCTTAAGATAGCAGTGTTTTTTTATTTCAACAATATAATTTATAATATTTTATAATAATTATATTTTTATTGTTTATATAAAATATTGTAATTTAATTTATATAATGTTATAATTAATTTATCCCAAGTTAATTGATGTATTATTTGGAACATCTGCATTCTTATTTTTAGCTATTAGTTGGGATAAAAAACTTAAAACAATTAAAATTGCTGTATTGTAAGCATCTCTTAATTTTGGGAATGGCTTATTTACAGCTATTAAACCTTAACACTACGTGTATTTAAACTTTGTGTCGTCCCACATGGAGCCCCTAACCTCGAACATTAAACCTTAACACTACGTGTATTTAAA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTACGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 279475-279834 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000003.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 279475 29 100.0 37 ............................. CTTTGTGTCGTCCCACATGGAGCCCCTAACCTCGAAC 279541 29 100.0 37 ............................. GTTATGTCTTTGTTACTTCCTTTCTTAACATGGTCTA 279607 29 93.1 36 ................TT........... CACTGGCGCATTTACAGCAATTGTAGCTTCTGCACG 279672 29 93.1 38 ...T.............T........... CTTACTTTCATTAACCAGAATTATTGGTTTATCTTTAG 279739 29 93.1 38 ................TT........... TAAGGGCGGGAAAGCCGTTTTCAAATTCACCAAACCAT 279806 29 86.2 0 ..C..............T.....A.A... | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 94.3 37 ATTAAACCTTAACACTACGTGTATTTAAA # Left flank : ATCAAACCTTAACACTACGTGTATTTAAACAACCATTTATCTCTATATCCTGTCATTATTTTATTAATTAAACCTTAACACTTTGTGTATTTAAAAGTTAGGATAATATTATGTTTTATATAAATACTATAATATATATAGTATTTATTAGTTATATTAGATTTCTGTACATAACTCTTAGTGGAGAAGACTTCTGGAATTTTGCCATTTTGGTATATGTACTTTATAAAACTGTAAAACACTGCTTAAGATAGCAGTGTTTTTTTATTTCAACAATATAATTTATAATATTTTATAATAATTATATTTTTATTGTTTATATAAAATATTGTAATTTAATTTATATAATGTTATAATTAATTTATCCCAAGTTAATTGATGTATTATTTGGAACATCTGCATTCTTATTTTTAGCTATTAGTTGGGATAAAAAACTTAAAACAATTAAAATTGCTGTATTGTAAGCATCTCTTAATTTTGGGAATGGCTTATTTACAGCT # Right flank : AAAGAAGCTTCTCTAATCTCTATAGAAGCTTCTTTTTTATTTTCTTTTTATTGCACTATATGGTCGTTGGTGTCGTCCCACATACTTCCCTTAACCTCAAATTCCAAATTCTTTTCATCACACAGCTTATCTTTAGATTTAGTGCTTCCAACCCCTGTAAGTTCTGGAGTCCACACATCTAAGCTATAGAATCCGTCTTTTGTATTAGTCCCAGTGTAAATTTTAATAGGTTCTTCCACTCCATTTTTAGATTTTTTCTGCATTTTATATCTTAATACTGTCTTATCTGCATTTGTACTTACAACTGTTACATCAAAAACTTTTTGGCTTCCATAAATTCCTGTTGCAGATAAAGTCTTCCCATCTGCTGTTTTTACATATATATCTTTATAAATGTTTGGAGGCATGTTTTGGTTAGTTACACTCAAACCTTTACTTGTACTTGTATTTCTTGTATCCCAAGCCTTTGGTTGTGCTGTTAGTGCGTTAGTATTATATTC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTACGTGTATTTAAA # Alternate repeat : ATTAAACCTTAACACTTTGTGTATTTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 287869-288029 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000003.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 287869 30 100.0 35 .............................. AACTTTACAGTTGGATGGCAAGAAAGTGGAAATAA 287934 30 100.0 36 .............................. TCTGTAAAAGAGTGTTTTAAACTACTCTTGCCAAGT 288000 30 86.7 0 .......................AAA...G | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 95.6 36 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : TATTTCTGGAGTTTGCTCTTTTACAAATTGTAGAGCCAACCCATTTTGTTTTACTGCAATAAGGGATAAATTGTAAAGCTGTTCTTTAGTTAAATTAAGTTCATCGAATTTAACATGTCCAAGTAACATTCCATCTCTTTTTAATGCTTCTATACACATCTCGTAAGTTTGTGTTTTTGCAAATCTCAAATCCCATGGCCATCTTTTTATACAATCTAAATCTATTCCCCTCACTTAGTCATCTCCTTTTCAACATTATTTTTATAACACTATATTTTATACAATATATTAAATTACGTTATTATTTATAATAATCATATCATTTTTATTGATTATATAAAATATTGTAAGTTGATTTATATAGTGGTATAATTAATTTATCTCAAGTTAATTGACATAGTATCTATTTTCTTATTGTTAGTTGAAATAAAAAACTTAGATTAATTGAAGTTACTGTATTATAAGCATTTCTTAATTTTAGAAATGGCTTATTTACAGCT # Right flank : GAAGTTACCTATAACTTAGATAACTTCTTTTTATTTATATTATTTATTATAAATATCTACGTAGACTCCCATACTTCCATTTTTAATTTCTACTTTTTTCCCGTCCATTTCTAAAGTTTGGTCTTCGAATTTTCCTTTTACAATATTAAAAAGTTGTTCCCCTTTTGTTGGTAGGAGTAGTTTAAAACACTCCTTCACAGAACTATCAAACTCTGGGGAATTTGAAAATAAACCAAATCCAACTACATTATCTTCTGCATTTACTATACCCATTTCATTGAATCCATTCCCTTGATTTGATTTCTGCTTATATACATATGTTGTGCTTCCATCTTTTGTCCAGCCAAGTTCAGGCAACTTCTCTCTAAACTCTGCATTTGTAATAGTTCCAGGAGTCTCTTCTCCCTTTAATATATTTAAAATTTCTCTAAAAACATTTTCATTTCCGCCATTGCCGACTTGTGTAACTTTACTAAATTCATGTTTTTTTATAAAATTTT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 289894-290187 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000003.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 289894 32 100.0 32 ................................ GAACATCCAAAGCCTGTTGCTGTGCCACTTGG 289958 32 100.0 35 ................................ CGTCCATCCAAGTTCTGGTAGCTTATTTCTAAATT 290025 32 96.9 34 ..............................C. AAACAAACAAATTAGATAGTCCGATTAAACTTTT 290091 32 100.0 34 ................................ TTGCCAGCTTTCTCCTTTATCTACTCCATAAAGA 290157 31 84.4 0 .................C.....-AA...G.. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.3 34 ATTAAACCTTAACACTATGTGTATTTAAACAA # Left flank : TATTTTTTTCATTTTATTTCCCTCCATATCTCCTCTATTTATATTAAACATTATATAATACATGCTATAAAAAATATGTAAAATATTGTCACTTAATTATAAATAAGGGAGTCTATCTATTTATATAAGTTTTTTATAAAAAAAACTAATCTATTTTCTTATTTTAATAATAATTTTTTTACCAATACATTATATACAAAACAATTTATCTTATAACCTCTCTTTACCAAAAGTTGCCTTTTTATATAATACTAACTTTAATTATATAATATGTATTTTTTTCTAAATTGTCAATATTTTTAATAAATTTTATTGATTATATAAAATATTGCAAGTTGATTTTTTTAGTGATATAATTAAATTATCCCAAGCTAATTGATGTAGATATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATACAAAAATTAGATTAACTGAAATTGCTGTGTTACAAGCATTTATTGATTTTAGGAATGGCTTGTTTACAGCT # Right flank : AGTTACCTATAACTTAGGTAACTTCTTTTTATTTATATTATTTATTATAAATGTCTACATAGACTCCTATGCTTCCATTTTTGATTTCTACTTTCTTGCCATCCATTTCTAATGTTTGATCTTCGAATTTATCCTTTACAATATTAAAAAGTTCTTCTCCTTTTGTTGGTAGAAGTAGTTTAAAGCACTCCTTCACAGAACTATCAAACTCTGTGGAATTTGAAAATAAACCAAATCCAACTACATTATCTTCTGCATTTACTATACCCATTTCATTGAATCCATTCCCTTGATTTGATTTCTGCTTATATACATATGTTGTGCTTCCATCTTTTGTCCAACCTAAGTCTTCCAGTTTATTTCTAAACACCTCATTACTAACACTCAAATCAGCATCATTCTTATCTTCTTTTTTATCCTGGTCCTTAACATTTATAGCATTAATTTTAATTCCATTATTATCTTCTTTAAATCCTAAATAATTAACTAATATTTCTTTT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 7 291329-291631 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000003.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 291329 31 100.0 43 ............................... AATATGTATATATGCATAACCTAATAACCTAATATTTAAACTA 291403 31 100.0 35 ............................... GAAGTTTAGTTTTTAGTTCTTCATATTTTAAAAAG 291469 31 100.0 35 ............................... CTTTAATATAGAAGCTGTAATAGGAAAAACAGCCC 291535 31 96.8 36 C.............................. TATTCTTTCATACTCAAATTTAAAGGAAGGTTTATT 291602 30 87.1 0 G.......................-A....G | ========== ====== ====== ====== =============================== =========================================== ================== 5 31 96.8 38 TATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : CATAAAATGTAAATAAATTATCGTTTAAATTTAATGAATACCCTGAACCATATTTTTCACTTTCTACTTTAGTACCTTTTTGGCCCAATTTATCTGCCAAATCGAAAATTTTAATTTCTTTATCAGCTGTAGTTTTTAAAGTTATTTCTTCTGCATTTATTGTTAAGCATTGACCTAATACACAACCCATAATTAGACCAGCTATAGTTATTTTTTTTATATTTTTATTCAATTTAAAACACCTCATTTTTATCTATTTAATATCATTGTATGTATTTTTTTATAAATTGTCAATAAATTTTGATATTTTTGTTGTTTATATTAAATATTGTAAATTTATTTATATAGTGATATAATTAATTTATCCCAAGTTAATTATTACAGTATTTGAAATATCTACATTCTTATCTTTAATTATTAGCTGGTATAAAAAACTTAGATTAACTGAAATTGCTGTATTTCAAGTATTTCTTAATTTTGAGAGGTGGCTTGTTTACAGC # Right flank : GAAGAGCTATCTAAATTAATAGATAGCTCTTTTTTTTATATTTAAAACTCTTTTAAGAAATTAAGATATCTTCCCCTATGAACATTAACACCTTTCTCTAAATCAAATCCTCCATTTTCATTATAGATTCTATTTATAAACTTTTCTTTAGTGATGTTTTCTTGGCAACCTATAGTAAATAGCCATTCTCCATCCTCTTTTATGGCTAATACTTCTCTGGCTTTTCCTTGCTTTTCTAAATATTTAACACCAAACTCTTCTAAATACTTTTCTTTGTCTTTAATATATCTAATTGCATATACATTCTGTTTTAGAGCTTTTCTACATATTTCATCTGTCTGATTCTTTAAGAATTTGCCTTCTAATTCGCTCCACTTTACATACTCAAGTGCTAAGCCATCCTCTTTTACTGCTTCAAGACAAATCTTTTTGGTTTGTTTCTTTACATATTCTAAAGCTAAACCATTTTCTTTTACTGCCTCAAGACATGTCTTTTCTGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 8 296670-297093 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQT01000003.1 Clostridioides difficile strain VRECD0023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 296670 31 100.0 34 ............................... TGGGAGATTCTCCAGAGTTTTCCGCATCAGTGAA 296735 31 100.0 35 ............................... AAGTGTCTATTAACATTTGCAACAGTGTCTTCTAC 296801 31 100.0 35 ............................... GTTATATTTTTGTTGCTTCCCTTCTTAACATGGTC 296867 31 100.0 35 ............................... TAATTAAAATATTTACAAATAGAATTATAAGAAAG 296933 31 100.0 34 ............................... TGATAAAACACTACATACAAACTCAACCTCGCTC 296998 31 100.0 34 ............................... TGTTATATAAATACATATTACACAAGATATGTAT 297063 31 90.3 0 ................T............CA | ========== ====== ====== ====== =============================== =================================== ================== 7 31 98.6 35 ATTAAACCTTAACACTATGTGTATTTAAATT # Left flank : TTTTAATTTACCGTCATTATCCCATCTTTGCAGTGTAATAACTGATACATTTAATAATTCTGCAAACTCTTTAGGTTTATAATGTTTGCTCATATAATCACAAAAGGATGTGATTATATTAGACTATATTTGATTATATTTTTATCAACTAAAGAGTATCTCCTTATGTTTAATTTATTTTCTATAAAACTATATTTTCACATTATAAATATAGTAAATTTTTCTATTTTTTATAATTTTATTTTCATGACACTATATTTTAATTTATTATACTTTTCTCAATTATTTTTTATAATAATTGTATCATTTTTATTGTTTATATAAAATATTGCAAGTTGATTTATATGGTGATATAATTAAATTATCCCAAGCTAATTGATGTAGATATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATAAAAAGCTTAAATTAATTGATACTACTGTATTACAAGTATTTATTGATTTTAAAAATGGCTTGTTTACATCT # Right flank : ACCACTCTTTGGACCATCTTTAAGTGTAAAAAAAGAGCTGTCTATCAGTTTAGACAGCTCTTTTTATTTAATAAAAATCCTTCAAAAATTCAAGATATATTTCTCTGTGAACGTTAATATCTTCCTCTGGATCAAATCCGCCATTTTCTGTATAAATTCTATCCATAAATTCTTCAAGATTTATATATTCCTGGCAACCTACTGTAAATAGCCACTCTCCATCCTCTTTTATGGCTATTACTTCTTGAGCACCTTTTTGTTCTTCTAAATATTTAATATCAAATTCTTCTACATATTTTCCCTTATCTTTTATATAATCAATTAAACGTTTATCCTGTTTTAGAACTTTTCTACACATTTCATCTGTTTGTTCTTTTACATACATAATTGCATATTTATCTTGTTTTAAAGCTTCTATACATATTTCTGGCACCTGTTTTTTTACATATCTTAAAGCAAATCCATCTTCTCTTACTGCGGTTAAACATATTTCTTCAGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //