Array 1 216352-217725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPK010000001.1 Streptococcus oralis strain CR135 Soralis_CR135_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 216352 28 100.0 33 ............................ TGTTCGATACGATATGTTAGATGCTTTAGTAGA 216413 28 100.0 33 ............................ CATTCTTTAAAATCAAACTTGCAACTTCTTCTC 216474 28 100.0 33 ............................ TATTCAAGTTATCAACCTAGTTGACTTTGTGAC 216535 28 100.0 33 ............................ TAAGATCCTGGCGATTTTTGAAATGCAGATAGG 216596 28 100.0 33 ............................ CGCTACTAATGAACTAATTTTGCATGTCTTTAC 216657 28 100.0 33 ............................ TTATAAATCCAATTCCAATGCGCTTTCTGACCT 216718 28 100.0 33 ............................ CTCGGCAGTCAACCGCTTTTCTTGCATGCCATC 216779 28 100.0 33 ............................ TAAGTATCAACCCTCTACAACCTTTTGCGAAAA 216840 28 100.0 33 ............................ CATAGCCGAAATTCGTGCAAATAATCGCTTCAG 216901 28 96.4 33 .............A.............. CACATTAAAGTTAATTGTACCTGTCACAGAATT 216962 28 92.9 33 .............AT............. TGGCTACGAGCCAATCTATTACAGCTACAAGCC 217023 28 92.9 33 .............AT............. TATCAGCATGACTGACCGTGACCTTGATACGTT 217084 28 96.4 33 ...................A........ CGGATAAGGCATGGCAATGATGTCTCCGTTTGA 217145 28 96.4 33 .............A.............. TCGTATTCCTTGAACTGGAATTGCTGGATATAA 217206 28 96.4 33 .............A.............. CAGGCAAACACAGATGCTTGTATTCGCTTTATG 217267 28 92.9 33 .............AT............. CGGTCTCGAAGACCTGAAGAAAGCACGCAAGAA 217328 28 92.9 33 ............TA.............. TAAGTTTCAAGATAAGTTTAAGAAGATTGGTAG 217389 28 96.4 33 .............A.............. TGATCCGACTGAGGGCTTTGTAGTCGCTCGTAA 217450 28 92.9 33 .C...........A.............. TGATCCGACTGAGGGCTTTGTAGTCGCTCGTAA 217511 28 89.3 34 .C...........AT............. TGGTGTAACTGTCCCAGCTAAACATGATACACTT 217573 28 89.3 33 .............ATA............ CGCTGGTGCAAGTAGTTGGCTTGCTCAGGAAGC 217634 28 96.4 33 .............A.............. TAAGGTTTTCGTTGAGGAGCATAAGATGTACCG 217695 28 92.9 0 .............A............A. | AT,C [217717,217722] ========== ====== ====== ====== ============================ ================================== ================== 23 28 96.3 33 GTTTTTCCCGCACTCGCGGGGGTGATCC # Left flank : GAGAATGAACATACCATTATAGAAATTGGGGCACTTAAGGTTACTCCATCCACTACAGAAGAGTTTAATGCTCTTATCAAATATGACGGAATCTTGCCTACGAAGATTTCTAAATTAACGGGAATTTCTCAGACTCTATTAGAACAAAATGGTCGAAATTTAAAAGAAGTACTTTCCGATTTTTTGCTTTTTATAGGTGAATCAGCTTTAGTTGGCTATGGTATCAATTTTGATGTTAAGTTTATTAACAATGAGCTTAACAAGTTAGGCTTGCCTTTATTATCAAATAAAACTCATGATTTAAAGAAATTTGTCAAGAGTGAAAAACTATTTCTGGCTAACTATCAATTACAGACAGCTCTTAAGGAATATGGAATTGAAGAGGTAGTTCCTCATAGAGCTTTACCGGACGCTAAGTTAATCTATCAGTTATCAACAAAAGTGAATAAATTTTTGGATAGAATCAATCGGGATTAGCGATTTCAATGGGATCTTTTAGT # Right flank : CATAAAATGAGATATAAGAAAAATATCCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTATTATAGGAAAAAAACATATTTTGTGTAAATGAAGATATCTTAAATAACAAAGGAGAAGACAAGTAAATCGAATGAATTCATCATGTAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTTTAGAAGAGTATAAGGAAATTTGTCTTGTATCTGTTGTCTTAAAGTGTTTCAGAACTAAATGCTCAATATTTTTTGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCTTGGCTCTCCTGGCTGGTGCTAGTGAGACCGAGGTTGCTCCCCTGGTCGAGCGCCTCATCGCAGAGAAAACCTTTAACTTAGAGATAGCCCAGCGCTATCTAGAAAATTTACGATCATAAAAAAACTCAGATCAATTGGTCTGAGTTTTTTGTAGTTAAATACTTTTTCCAGGTAATAGGGTGACTGGTAAGAAG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACTCGCGGGGGTGATCC # Alternate repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87554-87057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPK010000008.1 Streptococcus oralis strain CR135 Soralis_CR135_NinaOddballs_Sia_NO_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87553 36 100.0 30 .................................... TTCAGGGTAAAAAGTATGATAGTTTTTACT 87487 36 100.0 30 .................................... GAGGTGATTAGATGGCTTACTTAACTAAAG 87421 36 100.0 30 .................................... TAAAGCTGTGATTGAGGCATCAACCGCTGA 87355 36 100.0 30 .................................... AGAGTGAGAAAAGGATCTATCGAACTTGCA 87289 36 100.0 30 .................................... GCAAGTAACAGACAGCTGGACAGGCTTAAA 87223 36 100.0 30 .................................... GGGTGTTTGATTGTTCAGGTGTGGAAGTTC 87157 36 100.0 30 .................................... CCCTATCGGATTCTATCACTTTGCACGCTT 87091 35 88.9 0 ..........................A...-...CT | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAACCAGAAGTCAAATCCATGATTGAAAAGTTAGTTGCTACGATTACAGAATTGCTAGCATTTGAGTGTTTGGAAAACGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCGTTAGGGGTCAAAGTGGAAACTCTAAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTTCAGGTTTTCAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGAGTCTTATTTGTTGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAATCCTGAAAATATGGTATAATAAGAGTAACAATTGGAATCAGACGAACTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : TACATAAAAAGCTACTCAAAAAATGAGTAGCTTTTTAACTATTCCAACCCTACACATAGCTCATTCCTTTGTAGAAAAGGAAAACGGCCAATGCAATAAAAAGTACAGTGGCTCCGATTCTCTGGCTAGTACTATACATCCTTCTCTCCCCTTTGACTGGAAAGATGACTGCCAGAAAGGCCCCTCCTACTGCGCCACCGATATGCCCAGCTAGGCTGATTCCTGGGATCAGAACACTTCCAATGATATTTATCACGAAAAGTGTAAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCATAGCGCAAGACGATAATCGCAGCAAATAGTCCGTAAAGAGAAGTGGACGCTCCTGCTGCTAGGACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAAAAGAACTGTCTGGAGCCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGTGAAATCATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //