Array 1 90919-87442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLN010000001.1 Pseudoflavonifractor phocaeensis strain An431c An431c_contig-110_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 90918 33 100.0 34 ................................. CCTGGAGATGGTGTAGAGGTCTGCGCCAGGGACG 90851 33 100.0 38 ................................. CCGGGATTGACGGCACTTATAAAGTGCTGTATCATTAA 90780 33 100.0 36 ................................. CTGCATCCGGTGGAAACTGTTACTGAGCGGGAGGTC 90711 33 100.0 34 ................................. TACGACGACGGGAACGGCGTGGCCCTCCGGCGGC 90644 33 100.0 34 ................................. CGGTTCCACCCCTCTTTCTTGCATAAGTGCGTAC 90577 33 100.0 34 ................................. TATTTACTGGAAGTGGGCAGGCGTGGGCGCTAAA 90510 33 100.0 35 ................................. CGGGAGACGATACAGAAACCGACGAAGAGCTGCGC 90442 33 100.0 35 ................................. GGAGCTGGTGGAAAATGTCCAGAATGCCGTTGATC 90374 33 100.0 32 ................................. CAGGCCTCACGTCCGCCCAGCTGACCGACATC 90309 33 100.0 33 ................................. AAAACCAAGACCGCCGCCCTGGCCTACGCCGCC 90243 33 100.0 33 ................................. TTGCCGTGCTGGGGAAACCAGTGCTCCACGTCG 90177 33 100.0 33 ................................. ATTTGGAGGATGGAAATGGAATTGCCATCCACT 90111 33 100.0 36 ................................. CCGCGCAAGGCGCTGGCCACCATCGTGGAGCATATG 90042 33 100.0 35 ................................. CGGGTGGTCCACCCAGTCCCGGTACTCCTCCTCGA 89974 33 100.0 33 ................................. GCTGTCATCCCGGGTAATGGTGGCGGACAGCTC 89908 33 100.0 34 ................................. CATCAACTGTGGGAGGCCCTGCTCGATGCCTGCG 89841 33 100.0 33 ................................. ACGTTATCAATGATGTCTGTCACCACTACATTT 89775 33 100.0 37 ................................. CGGCGGGACCCGGCAAAGAGACGGGCGGAAACGCCCC 89705 33 100.0 36 ................................. GTAGTGGAAAAACCCCGTATCCTCCTCATACTGCAC 89636 33 100.0 37 ................................. TGGGTCCAGCGCCAGAAGCTGGAGACGGACATTGCCG 89566 33 100.0 35 ................................. TGGAGCAGAGCCAGGCCGAGCGGGAGCGCGCGGCG 89498 33 100.0 35 ................................. ACCATCCAGATAGCCGTCAATCACAACGGTATATG 89430 33 100.0 35 ................................. CGGCGAGTACAAGGACCAGTTTACCAAAGAGACAC 89362 33 100.0 34 ................................. GCCTGGCGGGCGGCCTGGGCGCCATGGGATTGGC 89295 33 100.0 35 ................................. GTTGTCAAAGTCGCCCAGGCGGTCAACGCCATCTC 89227 33 100.0 37 ................................. TTATGTGCCCAATCGCTTGGTTTGGCAGCACTGGAAG 89157 33 100.0 34 ................................. TATGAGAGGAGGCACCCGGCTGTGAAACGCCCTG 89090 33 100.0 35 ................................. TTGACATAGGTATATAATACACGTGTAAGCTAGCT 89022 33 100.0 36 ................................. TCGCGCCTGGTATGACGACCACCAAGATATTGTATC 88953 33 100.0 34 ................................. TGGTTCTTCTGCTTCTGCCGTTGCGCCGTCTGGT 88886 33 100.0 34 ................................. CTGGCTCTTGCCATACCACACCCCCCTCCGCATG 88819 33 100.0 34 ................................. CATCCCGCACCCCCTCCCAGGCGGTCAGAATCCG 88752 33 100.0 33 ................................. TTTACCCGTACAGCATACCAGCTCCCGGAGGCA 88686 33 100.0 35 ................................. TCCGTCTTCTGGGACGTGCTTGACATGGTGCGGGA 88618 33 100.0 34 ................................. TAGTTAGATCATGATGCCGTTGGAGCGGCTGAAC 88551 33 100.0 33 ................................. GGGAGCCTCCAGCACACCAAGGACCGGACCAAG 88485 33 100.0 34 ................................. GCGAGTCGGGATACTGGCCCGACGTATCAGATAT 88418 33 100.0 36 ................................. CCAGCATAGCAGTCCATCCCGTACACCCACGGGGTC 88349 33 100.0 33 ................................. CACCGTTAACGTCTCTGAGGCGGTGGACAACAC 88283 33 100.0 35 ................................. TGGAAGGCCTACCCGCCCCGCAGCGGCAAGCGCCG 88215 33 100.0 35 ................................. CTCTCTGATATGTCTGCTTTTGTGGACGCTATCTT 88147 33 100.0 34 ................................. ATTATAGAACTGTTGAGCGGGTGACGTAGGGTTT 88080 33 100.0 35 ................................. AGGTTTTGGTCCTCTGCGACGTTCAGCAGCGACAA 88012 33 100.0 34 ................................. GTTGATAGTCATTATATTTCCTCCTCCTTTAGAA 87945 33 100.0 34 ................................. TACGCGACCGATACGGCCACCCTGGACGGAGTAG 87878 33 100.0 36 ................................. TGGAGGAGGAGGAACGGAAGGCATGAACCGGGAAGA 87809 33 100.0 36 ................................. TGGCACCAGCTGGCCGCCCGGCTGTATCTGGACAAT 87740 33 100.0 34 ................................. GGGTGGAGCGTTTCCGATCTCCCGGATTCGGAGC 87673 33 100.0 35 ................................. TTGGGAGCGGGAGCCGGGGCGGTGCCGGCCTGGAT 87605 33 100.0 32 ................................. ATCTTGTGAAACACTGTCACAGGCACAGGGGG 87540 33 100.0 33 ................................. CGACTTGATAGTAACCGGGTCGATAGGCTCACC 87474 33 97.0 0 ............................A.... | ========== ====== ====== ====== ================================= ====================================== ================== 52 33 99.9 35 GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Left flank : AAAGACTATCCGCCCTTTTTATGGAAGTGAGCATGTATGCTGGTACTGATTACATACGATGTCAATACGGAGGACGCGGCAGGCCGCAGGCGGCTGCGCCAGATTGCCAGGCAGTGTGTCAACTATGGACAGAGGGTTCAGTGCTCTGTGTTTGAATGTTTGCTGGACACGGCCCAATGTAAACTGCTTCAGGCAAAGCTGCTGTCCATTATGGATCCGGAAAAGGATAGCCTGCGCTTTTATTATCTCGGAAAACGATATGAAAACAAGGTGGAACACTTTGGCTGTAAATCGTCCTATCTGCCGGAGGCACCGTTGGTTCTCTAGAGGTGCGATGTGGCAGCGGCCATAGATGGTGTGGGCGGTTCGCACCGAAATAAAGCTGTTTTTCGCAACTTAAATGAACTGATATTATCCATAGCATTGAAAAAGCGCTGCAAATATGCTAAAGTTTATCTAAACAATACAAATTTGCAGGTATAGTTTTGTATATATCTGCC # Right flank : TATCCATCCGGCTCAAACTCAAGCCAAACAAGATTTATACGAATGGAGCCGGTCTTGCCCCACCTAAAGGTCATCATTTTTTACTCATAGAGAAAAAGGCCTGACTGATTTTTGCGGATCAGTCAGACCTTTTTTATGTTTCTCTCTTTTATCCAAACGGTTTTGATTTTGTGCAACAAACAGCCTCTTCTGCGGCCTAAAAGTGAGAGGGTCAGATAAGTTCCCCAGGCGGTATCTTAGCGTGGCTCTGGATGCTGTCGTACTCCGGGGGAGCGGCAGCACCGGCGGTCGTAGCTGGACTGACCAATCTGGGACGATCCGCTGGCCTATGGGGAACTGATTTTAAACGGTGACCCGAAACGATATTTAAAGGCCGTGAACGAGAGGAGAAAGCTCAAATGGATTTGGTGGAACCGCTGTGTTTTTTAGCAGATATGTTCCGCTTGAGCTGGACGACACACACGACGGTCAGTGCGGCCAGCACCACGATCAGGCACACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9052-11277 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLN010000018.1 Pseudoflavonifractor phocaeensis strain An431c An431c_contig-110_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9052 32 100.0 34 ................................ CTGAGCTCAGGGAATAAATTGGGCGGCAAATGAC 9118 32 100.0 36 ................................ AGCCTGCTATAAGGCGGGGAAGACCATCACCCCCAG 9186 32 100.0 34 ................................ AACGTGGACGGGCAAGGGGCTTTGAAGGGGAAGA 9252 32 100.0 34 ................................ TTGTCGTAGCCAATGGCCTTCTTGAGCAGCGCGT 9318 32 100.0 34 ................................ AATACTTTACGCCAAAAAAGGCGTAATATTTTCA 9384 32 100.0 34 ................................ ACCATCCTTCCACCTCCTGCTTTATATTGTATAC 9450 32 100.0 33 ................................ AAAATATGGGAAAACGGCGAACAGAATCGGCGA 9515 32 100.0 34 ................................ ACTGCCGCCCCTGCTGGGCGGTCCCTCTGTCCCT 9581 32 100.0 34 ................................ GCGGGGCCCCACTGCGTCACCCGGGCCGTGTCCT 9647 32 100.0 36 ................................ ACGGAGACAGTATATCATGGATTGCATACTTATGCA 9715 32 100.0 34 ................................ CGGTAGCCACGCCCAGGAGCCCTATTTGCTCGGC 9781 32 100.0 32 ................................ CTGCGGCTGCGTCCAGAGCTGCAACTACCCAG 9845 32 100.0 34 ................................ CGGTCGGACCGGATGAGACGGGCAGGCTGCAGCT 9911 32 100.0 35 ................................ CGGTCGGACCGGATGAGACGGGCGGGCTGCAGCTT 9978 32 100.0 36 ................................ ATCGTGTACCGGATGCGGCGAGACTGCCACATGGAG 10046 32 100.0 35 ................................ GCTCTGGCGGTTGGCACCACTGCGACGCCGCCCAC 10113 32 100.0 35 ................................ AAAAAAATGACTAACTATGATATGACTATCTGTTA 10180 32 100.0 37 ................................ ACCGACTTCCGCTACGCCCTGGTGGAGTCGGACTCCA 10249 32 100.0 36 ................................ AGTTTTCCCACGGAAAAATGTTGACAGGCGGCGGCA 10317 32 100.0 34 ................................ GTCTTTTTTGCCGCCATTGGCGGCGCTTGCCCCC 10383 32 100.0 33 ................................ AGGAGAGACTGGCGAGCTGCTAAGCCTGGGCGA 10448 32 100.0 37 ................................ ACCGGACAGCCGGGCACACCGGCCAGCGTAGTCGGCG 10517 32 100.0 35 ................................ AGCAGCAGACCATCATTGAACAACAGTACGCCTTA 10584 32 100.0 33 ................................ TGGTACCACATCAAAGAGCGTCAAGCCGGCTAC 10649 32 100.0 34 ................................ ACCAACTGCCGCAAGTCTTTGGCCCAGGTCAAGG 10715 32 100.0 37 ................................ TGCTCACAGGAACACGAAACAAAAGGCCAAGAACACG 10784 32 100.0 32 ................................ CAGCAGTTCGGCCACGAAATCCCGGTAATCGC 10848 32 100.0 34 ................................ TTGCTGGAGCTGTTGGCCGATGAGACTGACCACA 10914 32 100.0 33 ................................ ACGCTGACCCGCAGGTCGGAGGGCACGACTTAT 10979 32 100.0 34 ................................ TTTGCCATAGGATTGTAACTTGCTAAAAAATGGT 11045 32 100.0 34 ................................ CGGACCGACGGCACCTGGGCGCCCATGCCGGAGG 11111 32 100.0 36 ................................ GGCCGAGTACCACGCCTGGTACAGCCTGCCCGTCTG 11179 32 100.0 35 ................................ AATTTGCGGCCCTGTACCTCCTGCTTTTCGTCCCG 11246 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 99.9 35 GTCGCCCCTCTCGCAGGGGCGTGAATTGAAAT # Left flank : TGGATCGATATCCGCCCTTTGCCTGGAGGTAGCATATGCTGCTGGTGATTACTTATGATGTGGATACCACCGATGCGCAGGGGGCAAAACGTTTACGCAAAGTGGCCAAGCTATGTGAGCGAAGTGGGGTTCGGGTGCAAAATTCCGTATTCGAGGTGCTGGTGGATGCCGCACAGCTGGTAGTACTGAAAGCGGAGCTTTCCAAAATCATTGACCATGAGCGAGACTCTGTTCGATTTTATCGCCTGGGAAATTCCTATCAGCATAAGATTGAAACCATGGGGCGTACCCCTTTAGTACAAGCGGGGGAAGCTTTGCTGCTGTAATTGTGCGCCTACTTCGCCCATACAGGAAATCCCGGGAGGTAGGCGCAGAAAAACGAGAGAATCTAACGGAAGAATCCGGAGACTCGCGATCTGCTGTTACGATTTTTCCCTCAAAACAGTTTATTTTTGTTATAAATGCGGCAAAATACTAGACATATTTTGTCTAATTTTGCT # Right flank : AAGAACATTGAAATACAATTTGAGCCGACAAAAGCAGCGCCGATCTTTCCTTGACCGGCGCTGCTCCTTTTAGTGGATACTCCATATTAACCGTTCTATTTGATCACTTCTGTATGTACCGTAGATTTAGAGACACCGAATACCTTGGCGGCGGCGCGCACGGTGGTGCGATTCTCAATGATGTAACAGGCCAGAGCACAGGCCCGCTCCTCGATATTCCCCTTCAAAGACATGCACTCCCTATCCCTCTGAGCTGTTGCCATATCCTATGAAGGGGGAATGAAAAACATGATGGAAAAAGATAGCCGGGGAGGCATTCCGCAAGGACAGGAGTTCTCCTCCCAACACGCTCCGGGGAAAGATCAAGCCTTTGTTTGAAAAATAAAACCGCACATTTTCTGACAAAATTTTATGCTCCCCTTATGCCGGACCATGCCCGGTCCGACATAAAGGGAGCAGTTTCATTTTTTGCCTATGATCTGAGGCCCCGGCGAAACCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCTCGCAGGGGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //