Array 1 25549-26180 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000013.1 Alkalihalobacillus clausii strain 7539 contig00013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================================= ================== 25549 32 100.0 33 ................................ TCAAATATCTTCTGCCAATATTTCAACCGCTTC 25614 32 100.0 34 ................................ AAGTGCGAGTTCTCAACAAATAAATATACCAATA 25680 32 100.0 36 ................................ TGATAGCCGTTTACGTCCTCGACTAACAGAGTAAAG 25748 32 100.0 34 ................................ TGATAGAAAAGACGCCATCCGCGAGTGGGTTTCA 25814 32 100.0 34 ................................ TAACATATTTAAAGAAATTGAAGACGACAATTTT 25880 32 96.9 37 ........................G....... CATGCTTTTATCAGACCAGTTACGATGTCTAACCCCA 25949 32 93.8 33 ..........AT.................... CTGATCGGTGATGGATTGCCACTGCTCCATATC 26014 32 81.2 103 ..........AT.C........C.......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAAGTCACACGTGTGTAAGTAGTAGAGTCAAATAACAGTTTCTCTGGCCCCCACTCTTTTTCACGCAAAAAC 26149 31 75.0 0 ...........TT........AC..-...TCA | A [26159] ========== ====== ====== ====== ================================ ======================================================================================================= ================== 9 32 94.1 43 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCATCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAACTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAACCGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAATCACCATTAAATAGGGCCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTCGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTGCAAAGATGTAATAATATGGTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCATTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGGAGATCACCCATATGAATCTTATTCTTTGAAATTAAACACA # Questionable array : NO Score: 8.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:-0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 39866-40631 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000013.1 Alkalihalobacillus clausii strain 7539 contig00013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 39866 32 100.0 35 ................................ TTATAGGGTCTCTCGTCAAATAATAAAATTCTGTA 39933 32 100.0 34 ................................ AGAGGAAGCAGAAAAAGCGGCACGAGAGTACAAT 39999 32 100.0 35 ................................ CTTACGTGGAAATGCATTGGAGAAATCGCGGAGAA 40066 32 100.0 35 ................................ TTGTAAGGCATTACGTTCGTCCGCAAATTTTAACG 40133 32 100.0 35 ................................ TCTACGTCAACGCCGCGAAAAAAGGCTGGAATATG 40200 32 100.0 34 ................................ AAAGATCACTGCACACCCACCAGTGCGTGACCAC 40266 32 96.9 35 ..........A..................... AACGATGTCCATTAGGTCGTTTAACGAGCAATTAA 40333 32 96.9 34 ..........A..................... TCTTCGAGTTCAATGATTTTCACAGTTGCTTCTA 40399 32 96.9 35 ..........A..................... TCGAAAATGGCGGCGACTTGCGCCACTTGCAGAAG 40466 32 100.0 35 ................................ GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 40533 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 40600 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ =================================== ================== 12 32 97.4 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATATGCCGTCATAAAAAATACCCCCTTCCGAGCTATATAATCAATGTTTAGGATGTCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAACCGATTCTTGATTTCTTCAATAAGCACTCGCTGAAACTCACTTTTCTCTAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGGGTTACTATGTATAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAGCAAAAAGAGCATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCTATAATGCAGCATTCGCCAAAGACTTAAAAGAACAAAAAACACAAGTTGCTGGGAGCACAAAAGAACTAAAAGACCAAAAAGAGCACTACCTGGCCATGGCACAAGATATCAAGGAATTAAAAGAAGATCAGCTCATAATTAAGCAAGCGGTGCTTGAAACAAATCGAATTGTAAAGAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 22474-22107 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000011.1 Alkalihalobacillus clausii strain 7539 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 22473 32 100.0 34 ................................ AAATACGCTGTACATCGTATATAACACGCATGTT 22407 32 100.0 36 ................................ GGTTTTAAATGAAAAGTATCTAACTAGCTCCCCTTC 22339 32 100.0 38 ................................ CTGGGCCCCAAAGCATCGTATGCAGGGATTTGCATTAG 22269 32 100.0 34 ................................ CTGGTGCGTTCAATAACTTCATCCATTTCCTTGA 22203 32 100.0 33 ................................ TTTGTCCAATACCTGCTCAGTTTCGTTTTCCGC 22138 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 6 32 100.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCGCACATGAAATCCCAGGGAGGTTCGCACCAAAATTCACTTTTAATATGTAATAATGTGTGTAAAAATGAATTAATGTGAGTGGGACCACATGGTAAAATAGGAGAGAAAAACGAAATTCACGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAATTCGCT # Right flank : GACAATTACAAGGTTATGGACTTTGATCCGCTCGAAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACACCGGTTAGACTGAATCATCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTTGCTGTTTTTTTGGTTTGTTCAGCCAGCTGCTTGACAAGGTATAGCTCTGTTCTGTAAAGTAGTTATTACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGTTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGACCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 82676-82378 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000011.1 Alkalihalobacillus clausii strain 7539 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 82675 32 100.0 35 ................................ CTTCGACTACTCGCAATCTAAAGGTGCCAGCCCCA 82608 32 100.0 34 ................................ TGGCATCGCCTGAAGAAATGGTTTGCTAATAAAC 82542 32 100.0 35 ................................ TTCATGCTCTCTCCCCCTCTATCGGTTTTGTCAAC 82475 32 100.0 34 ................................ TTTAGTTTTGGCATTAAACCAATTTCACACGACC 82409 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : TAAAGTTTTATTTTTCCACTTGTCAAACGATAAACGGAATCGTTCAGGAAACCTATTTGCTTCGCAATCGTAGCAACTAAGAAGATAGAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCACCGGAAGAAGCGGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTTTTAATCAGGCCCAAATTCACACATATATCAAACAAGAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGAAATGGTTAGAGGAGATCCATCAATCGTTTCCTTGTGAGCATTCAGTATGATTAAAGAAGAAGATCAAAAAACACTTGGTGCGAAGCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTGTCTGTATGCCATGATAGAATAAAAGAAAAGAGCGGCATTTTCCTATAATTGTTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : TCGAATGTTGCCGTCTTGTTGTAACGCATGTTCGTCGCACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGCGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGGGGAACTCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGACGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGACGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGAC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 96134-95308 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000011.1 Alkalihalobacillus clausii strain 7539 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 96133 32 100.0 33 ................................ AATTATGCTCAAGAGCTTTTATCTCAAGCAAGA 96068 32 100.0 37 ................................ TCCCCAGCACGCACCAGTATTCCAAGCGATGCGGGAG 95999 32 100.0 35 ................................ TACAATGTTTTCATTTTAACTAAGCACCTTGATCC 95932 32 100.0 34 ................................ ATATCCAACTAATCCTTTAAAACGGTTGCCTTTT 95866 32 100.0 34 ................................ GTTGCTTTCTTCTTCCTCATTATTTTGCTTTTCC 95800 32 100.0 33 ................................ CAAATTCATGGTTAGCAGGAATAAAGCATCCAT 95735 32 100.0 33 ................................ ATCCACCTTATATATGTAGCATTCGCGCTCTAC 95670 32 100.0 34 ................................ GATGACAGGGTTTAATGATACAAATATCCTCCCT 95604 32 100.0 35 ................................ ACCGAACTCGGTAAAGAATGAAACAATCGCTTTTC 95537 32 93.8 34 .........C.T.................... TTCGCTCACGTCAGGCTTCAATGATTTTGACTGG 95471 32 93.8 34 .........C.T.................... ATTAATTTTCACTTTAATATCCATTAACTTAGGC 95405 32 93.8 34 .........C.T.................... AGGATTACCAGTCTACAAAAGATTGGACGCTTGA 95339 32 90.6 0 ........T...........A..........C | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 97.8 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : TCTCTCTCCTTTCAAATCTTAACATTCTAATGAATTTTAGCAGCAGTCAATGAGAATGAATAGTCTATAATAACTTGTTTCTATATGCTATAATTAATCTAGGGAAAGTGTAACTTTTTTAACATAGCTAACCGTACTGTAAACGGGTGACCCGTTTCAACCTCTAGAAAGCAATTCATACCTCCTTTCGTCCACAACGAATATCGTTAAAACCCGATTTTAAGAACAGCCTTGATGAACAAGCGCATGTAAAAGAGCAGAAGAGAATGACATTGATTGCCCTTCTTAGTATTTAAAAGAATAGAAGTGGTGTTTTTTTGGTGCGAACCCTAAGCGCACATAAAACCCCTAGATCACCCGCACCAAAAAAGAGCCTAATTATGAAAAAGCATGTGTAAAAATGGTGAAATGTTGTCTGTATGCCATGATAGAATAAAGGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTACTTCCAATAATTAGGGGGATTTCGCT # Right flank : ACGCTGCTGCCGTAGCAAATGAACTTAGCTCAATGGAAGAAAGAGGACGAATTATCAATTTTTTCACTTCTGTCGTCGGTCAAATGTTTCCAACGTATAGTGGGTACGCTGATTGGCTTGAATGCTGGCGCCTTAATGTTTGTTGTTGTCACGATTACGTTTCTGGCTGTTTCGTCATTCCAGTTTGGCAGCAACCAGCGATGGTTATTTCCGACAAGGGCACATCTTCTGGTTATGGCGTTTTTATTTTAAGATCGACACCAAGGCACTGGTTTTTACCGCTTGGCGCTAACCAATGCTGACGCCTTTCATTCAATAAAAATCATCTTTAGTAAAGCCATTAATCAAATCGATCAATCTAGATAAATGGATTGTATGCGCGTCTTCTTTACGCGTACAAAGGTAAACAGGCCGTTTAATCTCGATATCTTTTACAAGAACTTTGCCTAGTTCATTTCGGTGAATATGGTCTTTGACGGCAAGTGAGGGGGCAAGCATCG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 99873-99438 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000011.1 Alkalihalobacillus clausii strain 7539 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 99872 33 100.0 33 ................................. CGCTCAATAAATTGCTGAGCTAAATTGGCTCGG 99806 33 100.0 34 ................................. AGTTTGGTATAATGGGTCAGCTTTAAATAGTCTT 99739 33 100.0 35 ................................. GCTTACCTATGCTCACGAATGAGTTTTGTATTGGG 99671 33 100.0 33 ................................. TTACAGCGTTTCTCACAAACGGGAATACTGTTG 99605 32 90.9 37 ...........A-...............A.... TCTTCCTCTTCCGTCGCTGTGTCGCCCGCCGCCCGGG 99536 32 90.9 34 ...A.......A-.................... TGTTAAATTGGCAAGCTAAGTAACTTACAACTAA 99470 32 81.8 0 ........-...C.C.......AC....A.... | A [99447] ========== ====== ====== ====== ================================= ===================================== ================== 7 33 94.8 34 GTCGCACTCTTTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAATACCCGAACCAAACTGAGGCATGGAGTCTTGTTCATTTGGGGAAGGTCAGTTCATGGCTTTTATTAGTGATTGTTAGTTTTCTGATCGTAGCGACATTAAAACAGGTGAAGGGGAAAAGGCGCACGGGAGTAGATGCTAGTCAATCTTTATAAAAAGCAGTGCTTTAGTTTAGTAAGGAACTTTGCGTTTTTACGATTCTTATTATTTTGCCAGTGCAAACAGGTGCTTTTTTGAAGAAACCTATAGATGGCACAAGTATAATAGTAGTAAAGTCGAGGAGGCAACATTTACTTCGTATTATAAGCAGTTCTTTTTGGTGCGAACCCCAAGCACACATAAAATCTCTAGATCACCCGCACCAAAAAAGAGCTTAATTATGAAAAAATATGTATGAAAATGGTGAAATGTTGCTCGTTGTCCATGATATGATAAAGGAAAGAGCGGTTTTTTCCTGTTATTGATTGTTTAGATTCCAATAAATAGGGGAATTTCACT # Right flank : CCACTCACCCAGCGCCCAGCACTGGTCTACAAGCATTCATTGCAATCCTCTTTTACTCAATTCAATTAATTTAATTATGGAAATCCGGTAGTAAAGGAGACATTTCCTCCTTGGGGGAATGTAGCGTCCACGAAAAAAAGGCCAAGAGTTTAACTCCTGGCTCTAATAAGGCTTGTACGACTAATGCCTTTTATGATTTATAAACTTATAGTATCTCTACGTACCCTTCTGCTCCATTCACCCTGATCTTTTGTCCATCCTTAATCAGCTTGGTGGCATTTTCTACCCCGACAACTGCTGGCAAGCCATATTCACGTGCGATCACGGCTCCATGGGTCATCAGCCCGCCGACTTCGGTGACTAGGCCTTTAATGGATACAAATAATGGTGTCCAACCAGGGTCGGTAAAGGAAGTGACTAATATATCGCCATCTTCCGGATCGGCATTTTCCATGTTTGCAATAACACGTGCTCTTCCTTCTATCACTCCAGTAGAAACT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 113020-112526 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000011.1 Alkalihalobacillus clausii strain 7539 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 113019 32 100.0 34 ................................ TGGTAACGATGATTTACAGAAACAGATTCAGCAA 112953 32 100.0 35 ................................ TGCCCCTGTTCCATGGACTGAATCTCTAATTCAGT 112886 32 100.0 34 ................................ TTGCGATTGCACCCAAATATTGCATTGTTTCGTT 112820 32 100.0 34 ................................ AAGGGTCATCGTATAGGGTTCCTCCTCCGTGTTT 112754 32 100.0 34 ................................ TTGAGTGAGTTGACCTTTGTAATTTTCTTGCATG 112688 32 100.0 33 ................................ AAAACTGTTGTCTTGGCTTTCAAGTGTATCTAG 112623 32 100.0 35 ................................ TTGCATTTCCCGTAAACGGGCAAAAAAAAGGCGGC 112556 31 96.9 0 ....................-........... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 99.6 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGGCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGTTGAGGTATTTCGTGGTTCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAAGGTTTTCTAAACCTATTATTTTGGTGCGAACCCCAAGCGCACATAAAATTCCTTGGATCACCCGCACCAAAAAAGAGCCTAAATATGAAATAATATGTGTAATAATGTATAAATCTCGTTTACGTCCTATGATATGATAGAAGAAAAGGGTGATTTTTCCCTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : CCATAGTCTATGGATAGGGCATCGATAGGGTTAGCCGGAGAACTCTATGTTTATGCCATTTCCATTAGGCCACACGGCAGTTTTCTTTTGTGGGTTGTGAAAATAGTGTCCACGTAAAACGAGAGCCAGGAGTTTTCCTCCTGGCTCTGTCTGCTTTTTTCAAGAATTGCTTTGCTAAATCATGATTAAATGCATGATTAAACGGCTGAACCGACCCGTTCGATGTGGATTTTTTGCTGATATTGTTCGGCTTGTGCAAAATCAATTGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTTGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAGTTAGGGTAAGGGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 120209-119777 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000011.1 Alkalihalobacillus clausii strain 7539 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 120208 32 100.0 32 ................................ GTTCCAAAAAATCAGAGGCGTACTTGTGTTTT 120144 32 100.0 35 ................................ ATTTTGTGATACCCTCCATTTACTTACATACAATT 120077 32 100.0 36 ................................ TACCCACATCGGTGTCAATCTTTAGTTCTTCGTCGC 120009 32 100.0 35 ................................ GGGTCATAGCAAAAAGAGAGCGAAGGGATTGGGAG 119942 32 93.8 35 ..........TA.................... TCTTCCCCTCCTGTTAACGGCTGATCTCGGTTATT 119875 32 96.9 34 ............A................... TTGCATCCGGCGAACGGAATGTGGCTTTCTGCTC 119809 32 68.8 0 .G......T.T.A.A.C....CCA...T.... | C [119779] ========== ====== ====== ====== ================================ ==================================== ================== 7 32 94.2 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CATCGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTTTTTGGTGTTCGTGGTATTAAAATTTAAGTGGGATTAGAAGGATGAGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATCACTAGATCACCCGCACCAAAAAAGAGTGCAAATATGAGTTAATGTGTATAAGAATGTGTAAATGTGGCTCGTGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTATCTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : CCACATGAATCGACGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATGAGCGCACCTACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGAGGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTTGTGTTAAAGGCGATGGCTTTTGCTAAATCAACGATGTAGGAAGCGTGCTCGTCAATG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 140570-140271 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000011.1 Alkalihalobacillus clausii strain 7539 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 140569 32 100.0 33 ................................ GGAGAAACTAACAGCGACGTTACTGTCAGTCAA 140504 32 100.0 35 ................................ TAAGCTCAGAGAACGGCCGCTTTTATCTACAAAAG 140437 32 100.0 36 ................................ TCGTCTTGATCCGGTTTTTGTTTTTCGATTACTACC 140369 32 100.0 35 ................................ ATTTTGATAAACCTTCACAATTCCTTTGCGCGTTT 140302 32 93.8 0 ...........AA................... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.8 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATGGGCATTCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGACGGGGCGAAGTTAAGCTTGCCGGCTACTTTTGCTGGCAGGCTTAAGCTTTGTATTTTTGGGGAAACGCGAATTTATGAATGGAAGTTAGATTTGCGGAATTGGCGATTGCTTGTAAAGAAAGGCATCGATTTTTAATCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCGATTTTATAGTGCGAACCCCAAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGGAAGTGTGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAAAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGACT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACGAAAATGCCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTATTGATTTAAAAAAAGGTACATTAACTTCGCCCGCAGTTTTAGCAAAATTTGGCGAGGATAAAATGGCAACGATGGCTGACAGTTCATCCTACTATTTGCTCGAACGGGCCAACGCCCGTTTCTGAAAGATAGTGTTAACAACAAGGGAACATACTATAATTGAAGCACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTTGAGTTAGAGGCTCAGGTGGATTATTCGTACCACTGGCCGATCCCCCTTGTAGGGAACCAAGCTATTGTTTGACTGGAGGTGTACCAGCACCT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 144453-145791 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000011.1 Alkalihalobacillus clausii strain 7539 contig00011, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 144453 28 100.0 40 ............................ TTGATAAAAAAATTGTCCCCCGCTTTCATCATTATACCAC 144521 28 100.0 38 ............................ CTGTGCGTACTAAACCCTTGCCAAGCTTTAGAATCTCC 144587 28 100.0 38 ............................ GCATGTCAAATGCTTCAAAAAAAAGCGTGTTGTCCCGC 144653 28 100.0 37 ............................ GGATAATTGGCTAGTACCCCTTGCACTTTTAAGCCCC 144718 28 100.0 38 ............................ GAAGAGTTAAATGCAAGAAAAGAGTATATTGCTCATGC 144784 28 100.0 37 ............................ ACGGAGAGCTTGTCAACGAATTTAATTTATATGCTCC 144849 28 100.0 38 ............................ GTAAAGGAAGCTATGCGGCGTGCTTTTTTATTTCTGAC 144915 28 100.0 37 ............................ GATGTGCTGGAAATAGGCGCTGACGGACGGAGTCACC 144980 28 96.4 38 ...........................A CGCCTCATCCGTAGTTGTCTCGTTGCCGCAAGCAGACG 145046 28 100.0 38 ............................ GGAAAACACCAAACGATATTGACCCTGAAACATACCGG 145112 28 100.0 37 ............................ ATTCGGGACAGATGAAATGCTCATTATATCTAGTCAG 145177 28 100.0 37 ............................ TGGTTGAATGAAACGGGCAATCATCCTAACTTCTACG 145242 28 100.0 38 ............................ GCGCCTTCTCTTCTTTTACGATAAGGAGGGTTTATATG 145308 28 100.0 37 ............................ GGTTATCCATGATTTCTTCAACTTGATCGAGGACTTG 145373 28 100.0 36 ............................ CATTGACAATTGAGCAGGCCCAAGATCTTGGCCAGG 145437 28 100.0 38 ............................ AGGACACTCGCGGACATAAGTCGCATAGGAAGGCGCAG 145503 28 100.0 37 ............................ CGTTACTGGCAATATTAACAAAGTACTAGACTTCTTG 145568 28 100.0 37 ............................ AAATCTATATCTTTTTGTGTTGTTGTACTTACCCGTG 145633 28 100.0 38 ............................ GTTCTTGCCAGCGCTTGTTACGTTCGGTTTGAGATAGG 145699 28 100.0 37 ............................ TAATGCAAATCCCTGCATACGACGCTTTGGGGCGCAG 145764 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================== ================== 21 28 99.8 38 TTTATAACCCACTAAGTTCATATAAAAC # Left flank : TTAATCTTCGGACTCTATTCATCAGTATCTTTGCAAAAGGCAGTAAGAGATAAAGATGAAGGCATACCTGTTACGAGTATTTATTATGGGATTAGTTGGGTTGCACTTATTGTCGCTATTTTATTAATGGGTATCGGTTTATACAATGCAGGCAGCATTGTTCTGAGCGAAAAAGGATTTTATGGCATGTCTTTTGTCCTTAGCTTATTTGCCGCCATCACTGTTCAGAAAAATATTAGGGACACACAACGGGCAAGAGAAAGAGATTGAGTAGTCCGTTTGCCTTACATGGAACATGTAATCTACATAAAAAAATGAACCTTGGACGGGGTTCATTTTTTTATATAATGAAAGGATGAATAAACCTGTCTTGATCCTTCCTGTAAAGTTCGATTCCGTCCACAACTCTGCTTTCTGGTCATGAAGATACAAAGGTAGCTTAAGCGCTTGTCTTATAAAATTGGATGCGGATCGTTATTTTGTAAACACGGTTTTCTTCA # Right flank : CCCTTCATTTCAGCCAACAAAAAACCTTAAAACAACGGGCTTTTTCACGATTGCCTATCCTATCAAATGTCTTCATTTTGCAGTAGATCGCCAGTCGTGTATTTAGAATCACTTTAAAATAGCCTGAATCCCTTAAGGGGCAAGCGATTCGCTCATTTTACATCAAAACCGATTCACGGCAAACTGTGAATGTTTCGTCTCATTTTATCATTTATAAAAACAAGTCGGAAGGGTTTCTCTCATGACCATGGATCATCTTTTTTAAGTTTCTAGGATTGGCAACCTGATATAAATAGATAGAGTCTGAGTCTTTTTTGATAATGGTATCAAGTTCAGCCATACATTTACTTAATGTTCCTTTCGTTATTTCCCCTTCAAACACTGAATTTTGGGTCCAGTCCAGATATTTTCGCAGCGTTTTGCATACTTTTCCAACTCGTTTTTGGCCAACATCGTACGTGATAATGACAAACATGTTACCACCACGCTTTCAATGGCTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATAACCCACTAAGTTCATATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 9 154704-155890 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCC01000011.1 Alkalihalobacillus clausii strain 7539 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 154704 29 100.0 36 ............................. CTGCTTGCATCAAATATTAACGAGTGTACAAATCAA 154769 29 100.0 35 ............................. AGGGTGAGGGCATGGACGGCTGTACACTGCCATGC 154833 29 100.0 38 ............................. TAATCAACCGCATTTACCCCTTTAGGCTTCACATGGAG 154900 29 100.0 35 ............................. ATGGTCGAAATGTATTTGGCTAACCTGAGCCACTC 154964 29 100.0 36 ............................. TTTGCTTTGTCATTTCCGCAATAACGTATGAATGTT 155029 29 100.0 36 ............................. CGTATTTACCTGTTACAATTTCTTCTCCCCACTCAC 155094 29 100.0 37 ............................. AAGGAGGAAATGATGAAAAGATATGCAGTAGGTGTAG 155160 29 100.0 34 ............................. CTACCCATATTTTCGTTCTTATACCTGTCAACTT 155223 29 100.0 36 ............................. GTTAAGGAACCGGCTTTAGCAGGGTCTGATAAAAAA 155288 29 100.0 34 ............................. TCGTTATCCCTTGCAACAGCGTCACGCATTTCCC 155351 29 100.0 35 ............................. CGCAATAGGTATGTTATTGTGTTCGGCGTATTGAA 155415 29 100.0 38 ............................. ATGTATCCGGCTAGGAAACTGTTTGTTTTGATGATGTC 155482 29 100.0 36 ............................. AATACTCCCACAAGAATCAAAACAATTGCTGCAACA 155547 29 100.0 35 ............................. GTTGCTGTCACAATCGGGACGTCTGGCACAATATC 155611 29 100.0 37 ............................. AGGCATCGGAATTTTTGGGGCAAAATCATGGTTTTTT 155677 29 100.0 35 ............................. TAGTTTCACCCTATCACCTCCTTAAAAGCGCTCAG 155741 29 86.2 36 ......CC......T.............T AGCCGATTGGTATGTCGAAAAAGTTATGGGATATGC 155806 29 79.3 27 .GG..........GT...C.........T CTGAATGAAGTTCTCCTGATATGGGCT Deletion [155862] 155862 29 82.8 0 ......A.......T.A.........C.C | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 97.3 35 GTTTTATATGAACTAAGTGGGTTATAAAG # Left flank : AACGATAGGCAATCGGTAATTTCTCTACTTTGTACGTAACAGCTATCCGCATAAGTCACCTCCAACAAGGAATTTATACCCATTATAAATATACCAAATTTTTGGTTACTCTAACAATAACCACTTGATTTCAAAACCGATAATTCTATCATAATTTGATCGCTGACAGCTTGTGTCAGTAGTAAAAAAATTTTTTTAAGAAATACTAGCCACGCTATCCCTACATAGTTCATATAATAAAAAAGACCTACAAACATAGAAAAAATCTTTTTCGCTAATTTAAATTAATGGTAGAATAGGAGAAGAACATTTCACTGATTGCCGTGAATCGATTTTGATGAATAATGGCTGAATCCCTTGCCTATTAAGGGATTCAAGCTATTTTAAAATGATTCTAAATACACGACTGGCGATCCACTGCAAAATGAAGACATTTGATAGGACAAGCAATCGCGAAAAAGCCCGCCGTTTTAAGGTTTTTTGTTGGCTGAAATAAAGGG # Right flank : CCGAAGACGGCTTATTATTTACATTCTTTTCAGGCTTTTTATCCATTTTATCTCCTCCACTTCAAGCATCCCACCTTCTTTGACATAGTTCTCCAGAACAAGATACACTAGAAACTAGAATCATAGGGAGGCGGTATTATGGGAAATGCGACACGTGATTTGCGAAAAGTCGAACGGATTTTTACGATTTTAAACTTGCTGAGAGAGCGAGATACCGTTACGGCAAGTGAGCTGGCTGAATATTGCGGCACAACGCAACGGACCATCTATCGCGATATGAAGTTGCTTGAAAAAGTAGGCGTACAATATGTAACAGAAGGAAAAAGCGGTTATCGGCTTATTTCTGGTCCTGTTATACCCCACCGCAAGCTGACGCAACAGGAATGGATGGCGCTCACTGTTTACCCACTGGTAACAAATGATTTTCTCCATAATGGCCATCCGGTACATGATGCCTATCGTTCTGGTTTCGAAAAATTGAAGGGGCTTACACGTGATTC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGAACTAAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //