Array 1 272-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOLA01000001.1 Paenibacillus polymyxa strain LY214 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 271 32 100.0 37 ................................ TTCGCTAGTTCGGACGGGGAACAGATTTGGGATAAGG 202 32 100.0 37 ................................ AATCAATCCCTGGCGTGCAGAAGAATAATTGACCTGG 133 32 100.0 37 ................................ AAGTCAGCCACTGAAATATTCGATACTACGACTGCCA 64 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 100.0 37 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AGTTCCGTATTCGTGTCAATGTCATCTATCCTGGGGCCATTTCGACCAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAGCAAATTACCATCCCCGTCAAGTTTCCCGAAGGAGGGCAACCGTTGGCAGATGGACCGGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTTTTGGCCTCAGATCATTCGCGTCACATTACTGGTGCACAAATTGTAATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATAGAGCATGCTCTGGGACGGAGAAATGTTTTGTGGTATCCTGAGTGTATTGTCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAATGGATTCGGATTAGCTTTCTTCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTTGGCATCGTTTTTTTCGAAAATGCATGGAATTGATATCATTAGGGTATGAATTCCTTCATTTTCGCT # Right flank : TAGACCATCAGGAACGTCCATCAAAAGCATCCT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 188558-188327 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOLA01000011.1 Paenibacillus polymyxa strain LY214 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 188557 32 100.0 36 ................................ GTATTCCAATTTCGGAAGGTCGTCCGTTTTGCTCAA 188489 32 100.0 33 ................................ TACTGATCGGATACATGAGCGACTACCGCTAAA 188424 32 100.0 34 ................................ CTGACAGATGGAGGTTATATTTCACCGGGTCTAT 188358 32 87.5 0 ..........................G.T.TG | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 96.9 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : CCCTCCATTTTTGTGGAAGTAGGTTGATCTTGTTAATACTAATTACGTATGATGTAAGTACATTAGATAGAGAAGGCAGAAAAAGACTGGAAAAGGTTGTGAAAAGGTGCGTAGATCACGGACAAAGGGTGTAAAATTCCGTGTTTGAGTGCATTTTGGATTCGACCCAGTTCCGCCGTTTAAAATATGAATTAGAAGAATTGATAGACAAAAAAGAAGACAGCCTGCGTTTCTACAACTTTGGAGATAGCTATAAAAAGAAAGTAGAGCATATAGGGGCTAAGGAAGCTTACGATATGGAAAGCCCACTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTATTAAATTTGCTATTTATCCGTAGAGTCAATAGTTGATCCAAGCTTATTTGACATCAGTTTTTGCGACAATGTGTAGAATTGATATCATTAGGGTATCAATTACTGCATTTTCGCT # Right flank : AAAAAGAAGGCTTGTTTCGTGGCCTGCCCAGCAGTGAATAGGTGCAAATTTCTTCTTAACGGATTTCTTATTCGACAAATTCCCCCTTACTTTTATGCAACAATTAACTAACATTTACAATGGTTGAAGTATAAATTAAGGTGGGAGTTGCTGCTTATGAGAATTTCCATGAGTAAGTTTTTAAAGCGCTATGCAGCTATTTTGTTGGGCTACGCAATATGTATAGGGTTATTTTACGCTTTGGGATATAAGATGAGCGCAATGGGAATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAACTTCGTAATATCAAAGCGAGAGAAATGAACCTAGGTATCCCCTGATTGCATCAACATCAGGGGATTTTTCATGTAATTAAAAGGTCCAACAGAGTTTCTGCATGGGACCTCTATATCATTACTGGTGAGAATCCACATGGGGAAATGAATTAGTCATGTCAACTCTGTGAAACCTTTTACTTGGATCAA # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 190104-189668 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOLA01000011.1 Paenibacillus polymyxa strain LY214 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 190103 32 100.0 39 ................................ TTCCTGGATGTGAATGTCCATTTAATGCGTCCAAAGGGA 190032 32 100.0 34 ................................ TGAAAAATTCGTCCAGGGTGTCCGTGGTCTGGAC 189966 32 100.0 35 ................................ ACAGATGGAAGTTATGTAGTGATCAGAAAGAAGAT 189899 32 100.0 35 ................................ ACGAACAGCGTTCTCGCTCATGCCTTCGGTGTTGA 189832 32 96.9 34 ......T......................... CTTCAACGACAAAAAAGGCTCATACCGAATAATT 189766 32 96.9 33 ...................T............ GTTTCTCTGCCATCTCTGCTTTTAAGAGTTTCG 189701 32 90.6 0 .............................CGG | AC [189671] ========== ====== ====== ====== ================================ ======================================= ================== 7 32 97.8 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATGCAGCCGGTATGATGAACAGGATTAATAACTCAACTTTTGCCGAACGTTTTCATAAAATATTTTACAAATACCTTTATGATTTTCGAAAATATAAAGGTATTTTTCTGATCAATGTAGTCGATATTTCCGGATGTATTTACCCAAAGCCAGAACGTTCAGCTTTGGTGTTAACTGGTGGGACCCTGCTTTTAAAAGCGCTATCGATGAATTAAATATATTCGAATGTGCGCTTACTCCTTCACAGGTGGCAGAACTGGCAGAGGTGAAATAAGTCCAGGCAGGTATTTGTTGCTAAGCCAAAAAGCGAGTCTGTCCAGGTGCGAATGTGAAGCTCACATGAATTCTCCGAGAGATTCGCACCTCAGATTTTGTCGAATTATATCGAATATGAACAAGTTTTAAACGATCGCAAGAGGATGAGGTAATATTAGATGCGTTTTTGCCAAAATAACGCTAGAATGGTACTTAAATAGGGGGCATTTGACCCATTTTCGCT # Right flank : AGCAGCCGCCACTTGGTCGTACGAGTGGAGAGCGCTCTTTATCCGAAATCATGAAGGGGTCCGTGAAGTGAGGAGCTGGAGATTTTACGTGGTTTGGAGGGAGACGGCGTTGGTTCAGTACAATTCCGTGTGGGATGATCTGATCTTACAGCAAAAAGATGATTTTTATTTCCATGGACGCCATAAGCGCCCGTCGTTAGATAACGTGAATGCCCTATTATCTTTTGCCTATACACTGTTGTCCAACGATATGAAATCCGCACTGGAAGCTGTCGGTCTGGATGCTTATGTAGGTTTTCTGCATAGAGATCGTCCAGGGCGAGCCTAATTGGCACTGGATGTGATGAAAGAGCTTAGAGGAGTAAATACCGACCGTTTTGTTCTTACATTATTAACAAAAAATGATTCATGGCAAAGGATTTTACAAAAAAGAAAACGAGGCTGTCATGATGGACGATGATACGAGGAAAATCGTATTGAAGGCATGGCAAGAACGGAAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 197036-196590 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOLA01000011.1 Paenibacillus polymyxa strain LY214 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 197035 33 100.0 38 ................................. AACCCCGGCCCGATCTAATTGTCTTCTCTGATCCGGGA 196964 33 100.0 36 ................................. CGTTGAACTTCACAACTTTGGATAAATTGGAGCAAG 196895 33 100.0 36 ................................. AACCTACCGCGCATGTGTGCTCCAACTTTGAGAATA 196826 33 100.0 36 ................................. GTCAAGAACGGTTTGTGTGGGGATGACCCCACCAGC 196757 33 100.0 35 ................................. TATGGAACTTAAGTTATTCGAAGTTAAAACGACTA 196689 33 100.0 35 ................................. TCTTGATCTGGTTCGGGGTAGCTTGGGGAGTCATT 196621 32 93.9 0 ..........A....-................. | ========== ====== ====== ====== ================================= ====================================== ================== 7 33 99.1 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATCACGTATGATGTAAGTACAGTAGACAGAGAAGGTAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATTTTGGACTCGACCCAGTTCCGCAGCTTAAAGTATGAACTCGAAGAATTAATAGACCCAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTACAAGAAGAAAGTAGAGCATATAGGGGCAAAGGAAGCTTACGATATGGAAAGCCCACTAATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCATTAGAATGCTGTCTATGAGAAAAAGTCAATAGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TTCACAAGTACCGCTCCCATCGAAATGAATAGAAGACACGTTGCGGAATTGAATCGCACAAGGGTTCTGACCAGGCTGTTATTGTTTCCGTTGATTGACTGGTTCCTTGCCGTCTGCACGTGCCATAAAGCCCCGGAATAACTCGGGAAGTGCCTCTGGATATTGCTGAATTACAGGAGCTCTGCTGCGATCTGTTTGAGCACTGGCGGTGTTGGGATGAGTTGGCCGTCACCTTTGTTGCCCTTGATGTAGGCTTTATCCTCGTAGGCATAATATACATCGCCTTGGCCCTCAACGACCGGGTAGCCGCTCTCATCATCAGTTAAAGATGTTAGCACGTGATTGCCATGTTGTGCGGCGTGCTCCTCATCATGCAAGCGCAGGATGCCGTCCTTACTTAAAAATGCGAAACGTGGTTGTGTAGTAGACACAATCATGTCCTCCTGAAATGATTTTTTTGAGAAATCAAAAAGGCCGACACATTGGCCGACCTGATTCAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 4 206708-206142 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOLA01000011.1 Paenibacillus polymyxa strain LY214 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 206707 32 100.0 34 ................................ ATTTAGAATATCTTTAAAGTTCTGTTCTTCAGCC 206641 32 100.0 35 ................................ CTACTAAACGGAAGTGCATAGTGTACTCATTATTG 206574 32 100.0 35 ................................ AGATTCCGGTACGCCATAGTCGGAAGACAGATACT 206507 32 100.0 33 ................................ CATCAGCCAACGCTATGATCTCGCCTGTATCTT 206442 32 100.0 39 ................................ CCTCGTGCGGCCTGTAAAAACCGATATAACGAGGGTCAA 206371 32 100.0 36 ................................ GTAATGGTCCCTTAGCGCTTTGTCGTTGAAGTCAGT 206303 32 96.9 33 ...................A............ GCATTACCCTCCCAGTAATCCATCGTAAACACA 206238 32 96.9 33 ........T....................... TCTGACAAATGTTAATTAAGCAATGCCTCACAT 206173 32 84.4 0 ....T........C....AT..........G. | ========== ====== ====== ====== ================================ ======================================= ================== 9 32 97.6 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GCG # Right flank : ATCTATAGTGTTCGTAACCTTGCATAACAACTCTCAGCAGACTTTACATGATTGGAGCCAATATAATTTGTGTTATGAACTTTAAGATTATTAGTTTAGTTCTCTCTAAAAATACTATTTCCACATGATTTAAAATAATATTTGTTTACATAACGAGAATAGATCTAATATGATTAGTAAGTAGAAGAGAATCTAGTATTTTAAGCGGAATATAAGTCTCCTTCAATAACCACCTAAAAGTCATAAAATGAATATAGAGCTGTGGATGTGAAACCGTAATCCTTGAATTAAGTAGATAAGAGAGGAAAGGAAGAGAAATTACAACACTAGGACAATTATATTAGCACTATCTATGAATTCACTTAACAACGGGAAATGTCCAAGTGTGGATTCTAGATGCTGTCGCTATTTACCTTAAGGCACGATTATACAGTTTAAGTATTTGCTCATAGGAGGAAAATAGATGAATTTATTATTCATTCCTGGTTTATATTTTTATA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //