Array 1 222518-220938 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHZ01000008.1 Bacteroides fragilis strain AD126T_1B NODE_8_length_223465_cov_60.789351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 222517 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 222440 47 100.0 30 ............................................... AAGTACAACATCGATACCGATACCCTTTCC 222363 47 100.0 29 ............................................... GATCGTGTTTGCGGAGCATTACCAAGAGG 222287 47 100.0 30 ............................................... TTTATCATACACTTTAAACGTGACAGTATC 222210 47 100.0 30 ............................................... TGGAAACTTTATCTATCATACAACCAAAGA 222133 47 100.0 29 ............................................... GCTATGTTTGTCGGAGCAGTAATAACGTC 222057 47 100.0 30 ............................................... GTCGAGTCCTACCGTAAATTTGGTGTATAC 221980 47 100.0 29 ............................................... GGATTAATTTTAAACCAAGAATAAGTTAA 221904 47 100.0 29 ............................................... AAGTTTATTGAGGGTCTTTCTAACATTGT 221828 47 100.0 30 ............................................... TTCGTATCAATACCGATCTGACGAACATTA 221751 47 100.0 30 ............................................... CGAACGGACAAAATTACGCTGCTCAGGTTA 221674 47 100.0 29 ............................................... CCGCCGGAGGCATTATAAAGTTGTGCATA 221598 47 100.0 30 ............................................... GTTTAGCGCAATAATCATAGAAAGAATGAA 221521 47 100.0 30 ............................................... CCAAAGATCTTTGTTCCAATTGGCATAACG 221444 47 100.0 30 ............................................... AAGTATGAAGATAAGAAGAATCGATAGGAG 221367 47 100.0 29 ............................................... GCGGAGAGAGCCAAAAAGGGAGGCGAACG 221291 47 100.0 29 ............................................... CTTTTGGCAATATCGCCAATCATAACCAA 221215 47 100.0 30 ............................................... GGCGCCGATTGCAGCACCAATCATTCAGTA 221138 47 100.0 30 ............................................... CAATTGACCTGACAACTGTGCATCCAATTC 221061 47 100.0 30 ............................................... GAATTTCCACCCTCTTAAAAGGAGAATAGG 220984 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : TTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 314107-315611 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHZ01000003.1 Bacteroides fragilis strain AD126T_1B NODE_3_length_584614_cov_44.591127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 314107 35 100.0 35 ................................... ATAGGATATTCCCTTTTTAAAGCGGGTCACACGAA 314177 35 100.0 35 ................................... AAAATTAATAAATAAACTTCCATAGCTTTTATTTT 314247 35 100.0 36 ................................... GATTATGATTAATTTATTTTCAATTTTCAGATCATG 314318 35 100.0 33 ................................... ATTATTCAATTCAGAACAGGCATCAAAAATTTT 314386 35 100.0 37 ................................... GCTCTTTTTAACCTGTTTTGCAGGATGCTTAATAAAT 314458 35 100.0 33 ................................... CAAAGAACGGATAACCCCACACCACTGTCCAGG 314526 35 100.0 36 ................................... AATTCCACGGATAAGCAAACACCTTGTCACCTAAAA 314597 35 100.0 35 ................................... GATATTTTCAATCATATCATCCGTTTGCCGATACT 314667 35 100.0 35 ................................... ATAAATCATTTAATTAAAAAACATTACTATAAAAA 314737 35 100.0 33 ................................... ATAGTTATTAGGTCAGAAACAGCTCCCGTTTTT 314805 35 100.0 37 ................................... CATATATATCATAATTTCTGATGTCTCTTTTGCTGAT 314877 35 100.0 35 ................................... GAGCGTCCAGCATTTCCGATTCAACGACTAAGAAA 314947 35 100.0 34 ................................... TTTGGAGCATTGTCTATCATAAAAATTCCGTAAT 315016 35 100.0 34 ................................... AAGCCATCCCTGATGAGTTTTGCGACAGGAAAAA 315085 35 100.0 37 ................................... TTAACATGCTCTGTTGCGGTGTTCTGGTAAAAGGCCT 315157 35 100.0 33 ................................... AACTCGGCATTGGTTAGGAATTCTTCACATTTT 315225 35 100.0 37 ................................... GAAAATCAAAGTTAAATTTTCCTTCTACAAAAACTTT 315297 35 100.0 33 ................................... ACGCTTTTTCCAGAAGCCGGTTACGCCAATTCT 315365 35 100.0 36 ................................... ACAAATTTCTAAGAACCAGAGACTGTGCCGCTTTGT 315436 35 100.0 34 ................................... AAATATGCCTGGGTACGCATATTAATTGTGTCAT 315505 35 100.0 37 ................................... TTTCCTGTCCCGGTGTGAGCTTGACGCGAACTTTCAT 315577 35 97.1 0 ........A.......................... | ========== ====== ====== ====== =================================== ===================================== ================== 22 35 99.9 35 ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Left flank : TTATATATCAACCTATACGAAAAAAGATAATTAAAACCGTCGAAATAGTCTAAACCTCTTGCGAAAATCAGAATTTGTTTAATTCATTGATTTTCTGCTTATTCTTTTAAATGAAAAATAATATATAATGTATAAAAGCTACGAAAGAACTAGCTTTTTTGTATATTAGTAAATCATTTGCGAAAAAAAACAAATAAGCAATTCGTTCTTTGACATAATACAGTTATTATCTGATAATTATAAATATAAGATTAATCTTATTTTCGAAATAGGCTATAATATAACAAATGAAGCAGGCATTTGCGAATAATGAATCGATCATATCAAAGTGATAATCAATTAAATATCTCTATATTCTACAAATTATTTATTTAAATTACAGAAAAAAAGAGTACATTTGCGAAAATCAGTTCAACACTTCATCTATCTAACTGAATAATAAGTTATTATATATTTATACAGATAGAATACATATTTTATAATAATCTGATTATCAATAT # Right flank : CCAATGCCCAGAAATACTGCAAACTTTCCTTATTAGCATGTAGATGTATTCCAATATAAAAATTTAACTACATTAAATAGAATAAGGGGAGAAGTTCAGACATAACGGCTTGGATAAGATCGTCATGGACTTCGGTATTGCTTTTAACATTGGGAAAATGATCAATAAGCAGGAAAAGAAGAAGAGAGGCAGAACTAATTTATTGGTAACTATTTTAATAAGCTGTGGAATAGCTTACCAAAAATACACAAAGGCGATAATACTACGGGGCTGTCCAAAAAGCAAAGTGCCCCCCAAAAGTCGGATAGCCCCTTTTACCATTGTTTATTTCGGTGAAAAGCCTCATATTACCGTTGTGAAAAATTAACAGTAATAGTTAAGATAGTATTTAGAGAGTTAACCTCCAGCCAAAATGTTCTTTTCCGGTTCGTTTATCGGAAAAAATATCTCCCAACCATCTTGTTCGTGTTGTAAGTTACATTGTAGATGCTTTGGATATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //