Array 1 232276-229312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGK010000002.1 Clostridium perfringens strain GY-71 NODE_2_length_722442_cov_342.317835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 232275 29 100.0 37 ............................. TTTATCTAACTCTTTTTTTTGTTCTGGAGTAACTTCG 232209 29 100.0 36 ............................. ACAAGGGGGGAAGGCATAAAAGCCATTCCCCCCCTA 232144 29 100.0 37 ............................. GCAGGTTGTGAAAATATTCGTATGCAGGTTGCTTATG 232078 29 100.0 37 ............................. AAAACATGAATAAGAATATATGATGTATTTTTTTCAG 232012 29 100.0 36 ............................. CAATATTTCTAGCATAATTTAAACAATCTTGATATT 231947 29 100.0 37 ............................. TGATATGGTTAGTTAAAAAAAGCTTGGCAACAAGAGA 231881 29 100.0 36 ............................. ATACTATTAAAATGGACATCCTTCATCAACCATGCT 231816 29 100.0 37 ............................. TACAAATGTATTTTTTCTTCATGTCTATTTTTAAATG 231750 29 100.0 36 ............................. TCAAATAAGTACACGCTTCCTTCATAGTCCTCTATT 231685 29 100.0 37 ............................. AAATATGTTAAAATATATGTAAACATATTTTAGGGGG 231619 29 96.6 36 .G........................... AAATTTATCTATTTCATCGCATGTCCAATCCACAGT 231554 29 100.0 35 ............................. GGAGAATTGGTTCCAGGAGTTTTTAATGCAGATAT 231490 29 100.0 35 ............................. TATCAAGTAAGTAAAGGTGAAGAATTTATTGTCTC 231426 29 100.0 36 ............................. AGTCAACAGATTCATCAATATCATCATAAGTGTAAT 231361 29 100.0 36 ............................. AGATTTAGATTTCATGGGCAGGGGCTTTGAAACAAC 231296 29 100.0 37 ............................. TCTTAATACAATGTTGGAATACAATTAAGGCTGTTGC 231230 29 100.0 36 ............................. TGGTATGTTAAGATTAATTTTTTTAGGATCTACTGC 231165 29 100.0 37 ............................. TGCTAGAACATTAGTCAAATAAGCAATCACAATGGCA 231099 29 100.0 36 ............................. ACTATACCAGCTTTGGCAGAAGGAGGAATAGTTACT 231034 29 100.0 36 ............................. TTTTTAGAAAGTTTGGAGGAATAAATATGTTTAAAG 230969 29 100.0 36 ............................. TCTCCAGTAGGAGATATATAAGAAGTACCACGAATA 230904 29 100.0 35 ............................. ATGGGGATATTTAAAAGCAGATGGTAGCAAAACAG 230840 29 100.0 36 ............................. AAATAATAAATTTATAAATAAAATTAGGATCTGCAA 230775 29 100.0 36 ............................. TAGTTGAAGGAGTAAAAAATATAACTCTTAATAGAA 230710 29 100.0 36 ............................. TTAGAAATTCTTACATCGTCAGTTGATTCTGTTAAT 230645 29 100.0 36 ............................. TTAATAAGCTCTTTAAATAGCTTAAATTTAATATTC 230580 29 100.0 37 ............................. GGTAGAATGGTTTCAATAGGAAGAAATATTGTACAAG 230514 29 100.0 36 ............................. CATCCATAAGTTCTTTATGTTCAACATATTCAGGAC 230449 29 100.0 37 ............................. CCATCTAGCCCAATTGTTAGGCATAAATGTATGAGGA 230383 29 100.0 36 ............................. GTTGGATTCGATGGCATTTCCGTTACAGGGACAACG 230318 29 100.0 36 ............................. AATAATGAGATAGTTGTTTCTGACACAGGTATTAGA 230253 29 100.0 36 ............................. TGAGGTTATTTATATTTGTTAATGATGCAGGATTAC 230188 29 100.0 36 ............................. AAATACATAAATTAAGGAGTGTTTGATATGACAAAT 230123 29 100.0 36 ............................. ATTTAGGCTCTATAACAGGAGTAGCGTCTAATACAT 230058 29 100.0 36 ............................. TCTTGTGTTTGGATTGTACCTGTTCCGAATCCTGCT 229993 29 100.0 36 ............................. TGATAGATATTTTACAGAAGAATATAAGCTTGCATT 229928 29 100.0 36 ............................. GGATTTTTCAATAGTAGGAAAGCAAAAAGGCGCTGA 229863 29 100.0 36 ............................. GTAAAGCATCAATCGCTACCTTGAAAGTTTTATCTT 229798 29 100.0 37 ............................. AAATTAAATTCAAAAATAGGAACTTTAGAAGGAGATT 229732 29 100.0 36 ............................. ATGAGTGTAATGAGTATTTAGGGGAAGATGATAGAA 229667 29 100.0 36 ............................. TTTTTAAGGTACAATACAATTTTAACATAAAAAATG 229602 29 100.0 36 ............................. GAGATTGAAAGAATTAAGGAACAAGGGTATAAACTA 229537 29 100.0 36 ............................. ATGCTCAAAGGACTTTAAATATTAGAGTGGTGGAAT 229472 29 100.0 36 ............................. AGTAACCTTTCATCATTAGTCTTAGTCATATATTTA 229407 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 229341 29 86.2 0 .................GAA....C.... | T [229314] ========== ====== ====== ====== ============================= ===================================== ================== 46 29 99.6 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATATTTATTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 273013-272450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGK010000002.1 Clostridium perfringens strain GY-71 NODE_2_length_722442_cov_342.317835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 273012 37 100.0 37 ..................................... TTAACTCTTCCTGGTTATTTTCATCAGCTTTAGCTAA 272938 37 100.0 37 ..................................... ATTGCTAGCAGTAGCTAATCCTGCACTTGTTTTTCTT 272864 37 100.0 40 ..................................... GCCTTTTCTTTAACAGCAGCTCCATTGATCTTTTCACCTG 272787 37 100.0 37 ..................................... TTGGACTTTAGCTGTATCAACCTTACCATTTACAAAA 272713 37 100.0 37 ..................................... GAAGCAAATAATAATGGGAATCTGAATGTATTGTTAA 272639 37 100.0 41 ..................................... CTTTGTTGTTAAATAACTTCTTCCTGGAATTTTTAGCTCAG 272561 37 100.0 38 ..................................... GCTTTAATTACTACTTGTCCTCTCATGTTGTTTCCTCC 272486 37 94.6 0 ..................................T.T | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 99.3 38 GTAGAAACCTACAATAATCCTCTAAGGATATTTTCAC # Left flank : TAAATACGGAAGAGAATCTTTAGCTTTAGATGTAATAGAAGAAATTAGAGCCTCTTGTGATAGAATTATTATTAAGTGGGTTAATAGAGGCGAATTTAGAAAAGTTGATTTTTTAAAATCAGAAGATGGAATTGTTCTTTCAGAAAAATCTTTTAGAAAGTATATAGAAAAATATTCTAAGGAATATAGTAATAGTATAGAAAGCGAAATAAATGTAGCTATAAAAGAATTTAGAAAGATATTACTTGATAAATAAATTAAAAATAATAAAAAATATCTAGTAATAATATTGAAAATATGATATAATAAGTAAAGTAAAAAATACCCCATTAAGGGTTTGGTAAATCAAATAGTTCGTTGATATAACTAGCTTTTAAGTATATTTTAGCTTTTTAGAATTAATGCAAAAAGGTTAAAATATTTAAAATTTTTCAAAAACAGAATAGGTTCAAAAAACAAAAGCTACAGAGTAGATAAATAGATATTTAACAATATATAGG # Right flank : TTTAAAACCTAGCTTTTGGTGGGTTTATTTTTTTGCCTTTATTTTTTGAAAAATAAGGGTTTTTTATATTTTGTAGAATTAATTCATAAGAAATGACAGGAAAAACAAGGAGTGAATTAATATGTTAAAAAACTTAACACCAAAAGGAAAGCAATTTGAAATAATGGATTTAGAGATGAAAGGACATAATGTTGTTACAGGATCAGCAGGTGCTGGTAAGAGTGTATGTGCTTTATGGAGAGCTAAGGCTATTGTTAATAGATTAGAAGAAGATGTATGTATTTTAACTTATAATAATACACTTAAAAATTATTTGACTAATGTAATAGGAGATGAAAGTGGAAAGATTGATATAACTACATTCCATAAAATTGCAACAGCTTATTTAAGAGAGATTGGAGAACTTGGATATAATGAGGTTTTGGATAAAGGAAAACCAAAACTTATAAAAAGTGCTATTGAAGAGGTTAAGAAAACTTATGGATATAATTCAACTCTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAACCTACAATAATCCTCTAAGGATATTTTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 278160-277743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGK010000002.1 Clostridium perfringens strain GY-71 NODE_2_length_722442_cov_342.317835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 278159 37 100.0 37 ..................................... CGAGCCCATGGTTGTAATAATACAATTACATTTTCTT 278085 37 100.0 41 ..................................... TCAATGTAGTAACCTAATTTTTCATCATACATTATTGAACG 278007 37 100.0 39 ..................................... TAGCAACATTTATTAAATACTCAGATACATTTATATCAT 277931 37 100.0 38 ..................................... CTATATACTTATCTAATTTTTCTTTCATGTTTATCTGG 277856 37 100.0 39 ..................................... ATACTTTTCCCTTGTAGATCTCTAGCCATCATTCTGAAC 277780 37 97.3 0 ......................C.............. | T [277746] ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 99.5 39 GTAGAAACCTATAATAATCCTCTAAGGATATTTTCAC # Left flank : AAAAACAAATATAAAGTAAGTTTAGACAAAGATATTTCAGTAAAAGAACTTATTACTATAAAAACAACTTTACTAGAAGAAAAAGATTATAATGAAGGTAGATATATGAATTTAGGAAAAGAATTTGCACAAAAGTTACCTTTATTAAGCATAGAAAATCAAATCAAATTAATAAAAAAATAGAAATTTTGTAAAATTAAGAAGTTATATATAAAATTTAATATAAATATATCTTTATATTATATATATAACTTCTTATGAATATAAATAAAAAATAGTAGAAAAAAATAAGGTTATATGTTATAATGAATCATAACAAGGATCCCTCTTAAGGGTTTGAAAAATCAAATAAAACCTTGAAATAACAAGCTTTTATATATGTTTTACTTAGATTAAAATATTTTGTTTTAGGTAATTTTACTAAAAAAATTAAAAAATCAAAAAGGTTTCTAAAATCAAAAGCTAGGTAGTCGATAAATAGGACCTTAAACAAAGATAGG # Right flank : ACATTATAGATTTTATGGAGTCCTAATCTATATTAGAAATTAGCAAAATTGATGATTTATTTAAGTAAAGTATTTTATATATAATATTTATGTTTTAGGCACGATAAAGTTATAAAAATGGAGATTATAAATGATAAGTATAAAGTTAACAGTAAATATTTTAGTTTGTATAATTGTTATATCTTGCAATTTTATTTTAACCTGTAAATCACATATAGACGATGAATTAATCAAACAGGAAAAAGATGAGAAGTTAGAAGCAGCTTTATTATATAGTAATAGATATTTAAGAATATCATATTTAATATTTTCTATATTAATAGGTTTATTATCTATCATATTAATTTATATTAAGTTAAATTATATTTTAATTATTGGAGAATTATTTTGTATATATTATTCTTTTAATAAATTATTAAGTTTACTTAGATTAAGAACTACTGCAACAGATTCTGAAAAAAATTAATATTATATTGGACATTTAATATTATTGATGAAGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAACCTATAATAATCCTCTAAGGATATTTTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //