Array 1 649-925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCK010000072.1 Prevotella melaninogenica strain SCHI0027.S.13 Contig_72_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 649 46 100.0 31 .............................................. CCGTATGGCTTTTCTTGGGTTGATTAGTTCT 726 46 100.0 31 .............................................. CCTTTGATCTAATATACGAAATTGCACCTTT 803 46 100.0 31 .............................................. CGCAATTGATGAAGAAGTCCGTTCTAAAAAA 880 46 97.8 0 ..........................................G... | ========== ====== ====== ====== ============================================== =============================== ================== 4 46 99.5 31 GTTGTACGTGCTAATGCAAAGATACACATTTTGAAGCAATTCACAA # Left flank : TTCTCAAAACTACGTCCATTGATATGATAGAATTCCTCAAGCATACGGCAGGTCACTGGGGATGTCTCCATACGTTTCTTTTAAAAAAGCTCCGAACTCTTTGGAATAACGAGTGCCGGAGGCTGTAATATCTATCTGCAAGGGAAGAGAGAAACTCTTACCTGTACGAATATCTATCCAGCGACGTCGACGAAGAACCAAAATAACCTTATGGTCACGAATCGGAAAGTCCGTCACCTCGACAGCTTCCATAAAGCCTTTTGATTCAAAATGAAGATCATCGGAAAGTTCTTTCTCCATCTTCTCATCAAGATAAATACGTAACAATGAAGTATCAGACTCTATCTTAACAATAGAGAAATAATGTAATACATCACTGGGTAAAACGAATTCGGCTAACTGATATAGATATTTTTCTTCCATGATACAAAGGAAAGAAAAATATATTAATTAAGAAAATTTCCCCACCTTTTTTCTACTGAGCCCCTCTTAACACTAAC # Right flank : AATAGAAAAGCTTTTCTTAGATATTAAACAGAGTTGTATGTGCTAAAGTCTGCAGCACATCTTATTTACTCACAAATAAATTTCACCCCTACGCCTTTTTACCTGACACAAGGGTGAAGATGATGAGGATGCCGATGACGAAAATAAAGAGGAAGGAGCCTAATGCACCGGCATAGATTCTACCTGTGTGTACCTCTAAAGCAAGACTCCAAAGCGACATGGGCTTATCTTTCAATTCTTCTGGCTGTTTTGCGAAGGATGAACCTTGGAAATAGGTTGCTATACATTCCTTGTTTGTGAAGTCAGAACTATAACCAGAGATTGTCTGTTCGTCTGGTGCTGTACCCGGTATACCGGGAGTAGAGACCATAGCATCATTGTAGTAAAGTACGACGTTATTCTTACGATCCCAGTAGAACAGACCATCGAAGGAGCCTACTATCCATGATTTGTTGTTTGCATATTGCCAAACGTTTTGCCCCATAACACTCACTGGGGGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACGTGCTAATGCAAAGATACACATTTTGAAGCAATTCACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 782-2903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCK010000074.1 Prevotella melaninogenica strain SCHI0027.S.13 Contig_74_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 782 47 100.0 30 ............................................... TCGTAATCTTTCATACCATCACAAGCAAGT 859 47 100.0 30 ............................................... TCCTAAGAAATATAAGAGTACTATTTTTGA 936 47 100.0 29 ............................................... TTCTTATCTCGTGGCAAATAGGCGTCTAA 1012 47 100.0 30 ............................................... CTAAACGCTCAACTCGTGATAGCTTCCTCG 1089 47 100.0 29 ............................................... ATTAGCAGAAACGAAGTCGGTTTCATAGG 1165 47 100.0 30 ............................................... CAAGCATAACGACAGTAAGGCGCAAGGTGT 1242 47 100.0 31 ............................................... TTGTGTGCGCTTGCGCTGCTTCTCGTACCCC 1320 47 100.0 30 ............................................... TGTTAGCAGAAACGAAATCAGTTTCGTAAG 1397 47 100.0 29 ............................................... CGTAGGTTCATATTAGCAGTTAGTTCACC 1473 47 100.0 30 ............................................... TAGTTTTCAACCTTGTATGCTTGAGTTCCT 1550 47 100.0 30 ............................................... TCAAAGCGTTAAAACAGGTCAAAAAGAGTA 1627 47 100.0 30 ............................................... TGTAAGATAAGGCAAGTGCGGACGCCCTAT 1704 47 100.0 30 ............................................... GAAGTTGTGCAGAGGTAACAAGACCATTAG 1781 47 100.0 30 ............................................... GTAAGATAAGGCAAGTACGGACGCCCTATA 1858 47 100.0 30 ............................................... AGATGAAGATTTGAGCAAAACATCACCCAA 1935 47 100.0 30 ............................................... CTAAACGCGTATGGGGGCAAAGCCCCCTAT 2012 47 100.0 30 ............................................... TTCCATGAAGTTGTAAAGTATGGTATTCTT 2089 47 100.0 30 ............................................... AAGTGTTAACATATTGACCAGAAACCAGAG 2166 47 100.0 30 ............................................... CAATGATGAAATCATCAGAAGGGCGAGTTT 2243 47 100.0 30 ............................................... TCAAAGCGTGAAGACAGGTAATAAAGAATA 2320 47 100.0 30 ............................................... TTTTGTAAATTTTTTAGTAAGAGGATTAAA 2397 47 100.0 29 ............................................... CCGCTGTTACGTTGTCTAATGGATGTGTC 2473 47 100.0 30 ............................................... TAGGCTCATTCAAAACGTCTTTGCGGTAAA 2550 47 100.0 29 ............................................... TTAATCTGTGCCGTCTGTGCTTCGCCCCA 2626 47 100.0 30 ............................................... TTAATACTAACTCTCCTACTGACATAGTAG 2703 47 100.0 30 ............................................... TAATGGCGAACTAAACAAATATGGAGATGA 2780 47 100.0 30 ............................................... TTTTGTTGATTGCCAGTATGGTATGTTATT 2857 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 28 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCACGTACAAC # Left flank : AGCGTATCAACCACTGACTTTTGAAAATGGAGATACACGTAGTGAACTGCTGGTAAGAAGTAGGTACCTGTTGTTCAAATCATCAGAGAAATGGACTAATGAACAGAAGCTAAGAGCCAAAATACTGTTCAGAGAATATCCTGACATTAAGAAGGCTTACGGTTTATCACATTCGCTAAGAATGATTTTTGCTAAGAATACTATCAAAGATGCAGCCAGACTATCATTGGCAAAATGGTATAATAACGTCGCAGAAGCTGGCTTTCATTCCTTTAATGTCATTGCTGCGACTTTCTACGAGCATTACGAAGACATTCTTAACTTTTATATTAACAGATCTACAAACGCTGCTGCCGAATCCTTCAATGCAAAAATAAAACTATTTAGGGCTAACTTAAGAGGAGTTCTAGATAAAAGTTTCTTTCTTTTTAGACTTGCCAAACTATATGCCTTTCCCCACTAAATATCGACTGCCCCTTAAGAGGGTCAAGTGAGTAACC # Right flank : CTTAAGTATCAGACTCTATCTTAACAATAGAGAAATAATGTAATACATCACTGGGTAAAACGAATTCGGCTAACTGATATAGATATTTTTCTTCCATGATACAAAGGAAAGAAAAATATATTAATTAAGAAAATTTCGGGACAGTAGATATTTAGTGGGGATAGGCATATATTTTGGCAAGCCTAAAAAGAAAGAAACTTTTATCTACAACTCCTCTTAAGTTAGCCCTAAATAGTTTTATTTTTGCATTGAAGGATTCAGCTGCAGCGTTTGTAGATCTGTTAATATAAAAGTTAAGTATGTCTTCGTAATGCTCGTAGAAAGTTGCAGCAATGACATTAAAGGAATGAAAGCCAGCTTCTGCGACATTATTATACCATTTTGCCAATGATAGTCTGGCTGCATCTTTGATAGTATTCTTAGCAAAAATCATTCTTAGCGAATGTGATAAACCGTAAGCCTTCTTAATGTCAGGATATTCTCTGAACAGTATTTTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCACGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //