Array 1 13331-13551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNH010000003.1 Listeria monocytogenes strain 2013L-5683 NODE_8_length_162623_cov_14.9787_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 13331 29 100.0 34 ............................. ATAGAATCATCGGAAATACGTATGCCGAACTCTT 13394 29 100.0 36 ............................. GAAATAATTTTGGACGGTTTGCAAAAATATGTAAAA 13459 29 100.0 35 ............................. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATA 13523 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 95.7 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCAACCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGCGGGAAGAGGGACTTGGCGATATTTGCTTGGGGAAACCTTCCGGATAAGAGAGGATTTTTGCTATTTTTAGGTAGGTCGACAGAAAGGAGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCTTCATATACACTATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGTTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCAATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTAGTTTTA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 479359-480648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNH010000019.1 Listeria monocytogenes strain 2013L-5683 NODE_2_length_484265_cov_16.2479_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 479359 36 100.0 30 .................................... ACCGCTTTCTTTCTAGTGTCCGCTGAATAT 479425 36 100.0 30 .................................... TACCACACCAGACGACGCCAGAGAAATGTT 479491 36 100.0 30 .................................... TTGGAAAATGGTCAATCCTAACATAGGTGT 479557 36 100.0 30 .................................... AAAATTTTTGATTCTTGGGGGATAGGTAGC 479623 36 100.0 30 .................................... AAGTCAATTCTACCGTAGGAACCTAGGTCA 479689 36 100.0 30 .................................... CGTTTTAATAATTTTTTAGTAACAGTTGCT 479755 36 100.0 30 .................................... TTTGTCATCATCGCCCTGCTTTCATTTACC 479821 36 100.0 30 .................................... TTTGTTGTTGTACCAAGATAACTTAGTGCC 479887 36 100.0 30 .................................... ACAACGGCAAAAAAGTCGGATTCGCAGAAA 479953 36 100.0 30 .................................... TCGGGAGACGACCCTTTAGACGCTTTAATG 480019 36 100.0 30 .................................... TTTCGTACGGGGGGGCTTCTCTTCCAACTT 480085 36 100.0 30 .................................... TCATTTCCCTTCTTCTTTTAATACTTGACT 480151 36 100.0 30 .................................... AAGGGTTTCAATATCGAGGAAAAGTACACG 480217 36 100.0 30 .................................... ATTTTCCTTTACAAATTCTTGCATCCGTTC 480283 36 100.0 30 .................................... ACGTTATTGGCAGTTTGCTGTTCCTGTTGA 480349 36 97.2 30 ..........................T......... TCAAGAACTTAATAAGTTCTAGCGCTGTTT 480415 36 97.2 30 ....C............................... ATCTATATCAAATGAAATTTCAATCCACAC 480481 36 100.0 30 .................................... TAATGCAGCTAAAGCGGCCGCGAAAGGTGC 480547 36 100.0 30 .................................... GACGTAATCGAGTTTTGCTTATCAGGAAAG 480613 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGGATCTCCGCATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGATAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAAGGGGCCCCCAACCATGAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAAAAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCAAACTAAACAAAAATGACAATATAAAAATCATTTTAATAAAAGATTTCCCAATCCAAGAAACCTCACCAACCCAAATAGATCCCAAATACGTACATAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //