Array 1 588429-589278 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP011280.1 Sneathia vaginalis strain SN35 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence            	Insertion/Deletion
==========	======	======	======	====================================	===========================	==================
    588429	    36	 100.0	    27	....................................	CAAGGGTGGTACAACAGATTAAATAAT	
    588492	    36	 100.0	    27	....................................	CCTTTAATTCTTTTACAAAAGTTAATT	
    588555	    36	 100.0	    26	....................................	AGTTGTTTTCACATGTTGGTATATAT 	
    588617	    36	 100.0	    27	....................................	CGATATAATCTACATAGTTTGGATAAT	
    588680	    36	 100.0	    26	....................................	AAGAAATGTTGCTTGCTCACATTCAA 	
    588742	    36	 100.0	    26	....................................	AGTTGTTTTCACATGTTGGTATATAT 	
    588804	    36	 100.0	    26	....................................	TATATCCGTTGTGTTATTGTCTGGTA 	
    588866	    36	  94.4	    27	G...........A.......................	GAAGAAGAATTAATCGTGCGTTAATCG	
    588929	    36	  97.2	    27	............A.......................	TAGAACATATTAATCGTAGTTGCACAG	
    588992	    36	  97.2	    27	............A.......................	TGGAATAAATAATGCAACAATTGTAAT	
    589055	    36	  91.7	    27	.....G.....CA.......................	TAGTATCATATCTTTATACTTACCATC	
    589118	    36	  94.4	    26	.....G......A.......................	GGGAAACTAATGCTAGCAATGGTGAA 	
    589180	    36	  91.7	    27	.....G.....CA.......................	ATATGTATTTTGAATATTAGGTATCTT	
    589243	    36	  91.7	     0	G....G......A.......................	|                          	
==========	======	======	======	====================================	===========================	==================
        14	    36	  97.0	    27	ATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT	                           	       

# Left flank :   AGTTTTTATAGAGCATTTATGAGAGAAAAAAGTATAGAAGAATATACCAAATATATAATTAGGAAATAAAAGTATGGTTATAATAAGTTATGATATATCAAATGATAAAAAAAGAAGGGTATTTTCAAAATTTTTAGGTAAATTTGGACACAGAATTCAGTATTCTGTGTTTGAAATTGATAATGCACAGTCAGTTTTAAATAATATAATTTTAGAAATAAATAATAAATATAAGAAAATGTTTGACCAGTCAGATTCGGTTTACATATTTAATTTATCTAAAAATTGTAAAATTTTTAGATATGGATATGCAGAAAATGATGAAAAATCAATACTTTTTGTCTGATATGTGCTATAATATATTAGTGCTTTCAAAATTGTAAATCAAGGTGTTAATATTTTTAAAATGCGAAAAAATCAAATCTCTCAAATGTAAAAAAAATAGGTTTGCAAATATGTGTCTTGTAAGCCAAGTAATTATTGATGGATCACATTAGAGG
# Right flank :  TAGAGTAGTGTAATTTATGAATAGGGGACATTATTATAAATAGTTATAATAAATATGATATAAATGAATATTACATTGAAAATAATAAATATTTAAAGGGTAAAATCATTAAAATTACTAATGATAGATTTTAAAGTGTAGAGTTGTTAGAAAAAGCAAAAGATAATATTTTTAATAGTTGGAGTAAATTTGCATTAGAATATCACACAGATTTTAGGATATATATAAAGTAACTTTTTCTAAAATTATTGAAGTGTATAATAGAGTGTGTAAATTATAGAAAATAATTTACGTACTTTATTTTTATTTAAAATAATATATATTTTTTAGTTTGACAGTTTTTAAGGATATAAATAACATATATTCTAATATTTATTATAGTTATAGCTTTTTTTGTTTTAAAAAAATGTGGTCATTTTCCTCTAATTTTTAATTAAATGTATAATGAATAAGATTGTAAAAAATTATACTGAAATTGATAGGAATATCAAAATATAATG

# Questionable array : NO	 Score: 2.80
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.85,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTGAAAGCATCTTTTAATTTCTACTATTGTAGAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:77.78%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,-0.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.41,0.27   Confidence: LOW] 

# Array family : NA
//