Array 1 138431-140019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCB010000019.1 Pseudomonas aeruginosa strain 174581 17-4581_ctg_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 138431 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 138491 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 138551 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 138611 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 138671 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 138731 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 138791 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 138851 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 138911 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 138971 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 139031 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 139091 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 139151 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 139211 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 139271 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 139331 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 139391 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 139452 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 139512 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 139572 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 139632 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 139692 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 139752 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 139812 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 139872 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 139932 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 139992 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 60637-59649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCB010000012.1 Pseudomonas aeruginosa strain 174581 17-4581_ctg_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60636 28 100.0 32 ............................ ATCACCGCCGCCAGTCCCACCGTTTCCGTCTC 60576 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 60516 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 60456 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 60396 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 60336 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 60276 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 60216 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 60156 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 60096 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 60036 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 59976 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 59916 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 59856 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 59796 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 59736 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 59676 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 325501-326845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCB010000006.1 Pseudomonas aeruginosa strain 174581 17-4581_ctg_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 325501 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 325561 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 325621 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 325681 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 325741 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 325801 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 325861 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 325921 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 325981 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 326042 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 326102 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 326162 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 326222 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 326282 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 326342 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 326398 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 326458 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 326518 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 326578 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 326638 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 326698 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 326758 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 326818 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //