Array 1 1103130-1102321 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001165.1 Streptomyces sp. Tu6071 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1103129 28 85.7 32 CGCG........................ TCGCCGACCACCGTGTTCGCGTTCAGCGACGG 1103069 28 96.4 32 .......................G.... CCGTCGATCGCGGACTGGTTCCCCATCGCGGT 1103009 28 100.0 32 ............................ TGCCGCTGGGCGGCGCCCTGGTGCCCGGCGTC 1102949 28 100.0 32 ............................ GACCACAGTCAGGGCCGCTGGAAGACGCGGGA 1102889 28 96.4 32 .....T...................... AGCACCCTGCTCACGGGCGCCATGCTCGCCGG 1102829 28 100.0 32 ............................ CCCCCTCATGATTGGTCGTCTTGTGGGGGCCA 1102769 28 100.0 32 ............................ CCCCTCGACGCGCAGGCCAACAGCCACGAGGC 1102709 28 100.0 32 ............................ ATCTGGGAGCTGAGCTACAGCACCGTCCTGAA 1102649 28 100.0 32 ............................ ACGCTGGAGAACCTCAACCTGGTCATGCCGAA 1102589 28 100.0 32 ............................ CATCGCTGTACGTCGGCACACAAGACCCCGAA 1102529 28 100.0 32 ............................ GCCCGCCCGGCCTCGGTCCCGGCGAGGTCGTC 1102469 28 100.0 32 ............................ GCGGCCTCCCGACTCGGGACCACGGCGCGGAT 1102409 28 92.9 32 ...........T........A....... ATGCTCGCCGCCCGCACGGACGGGGTCGCCAC 1102349 28 100.0 0 ............................ | T [1102323] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.0 32 GTTTTCCCCGCGCTGCGGGGGTGAGCCG # Left flank : GCGAGCATGCGGCGTGCGAGCGCTCGGGCAGCGGCTTCTTGGCCGACATCGCTGGCGATGGGATAAAAGGTGAGGCCGAGTTCGTTGAGTGCCTCAGGAAGCAACTCGTGGACGTCGTAGTCCGACTCGGCGCGTGTGCAGGCGGCGAGGACTCGAAGGCCGGGGGTGTCGAGTCCGGCGACGAGCGCCTCACAGGCGGCATTGACGACATCGCTCGCACGGATTTCCCCCATGCTCCAGAGGGCGGCATGGTCCTGTAGAGCGATTGCTGCTGCTTCGGTCGACGTCACTCGCCCATGATTCCCTCCACGGTGCGTCCTGGTCGAGCAGGTTTCATCGAAGTTGCTGTTCAGCGCCCTGTTCAGCAAGGCTCGTGCGGAGTCCGCGTAGCGCATCGCTGTCTTCTCGTCGAGACCGAACACCTCGGCGAGATGGAGTGGATCGGGCCCGTGGGTCAGGACCTCTTCGAGTTGCCGGTCGACGCGGAGCCGCTCCAGTGT # Right flank : CGCGCTTGCGGTTGAGGCGGGCGGCGTCCGCTCGGCCTCGGCGGCGAGCCGCTCCCGCTCCGTGGCGCGCTTGGTCAAGGCTCGGTCGCCGAGATCGCCATACGGGCGGGCGGTCCACAGGGCGACGGGGCGCTCGCGGGCGCGCCGTACGAAGGGGGCGAGCAGCGGCTCGCCCCCGCCGTGCGCCCTCCGCTTGGCGGGGCTCGATGCGCGCCTGGGCGGCGGTACGAGCCCGCGCGAGGCGCCGCCCTCAAAGCGCTGCTCGCCGAGCGCGCCTGGGAGCTCCCCGCCGCGGCAGCCACGCTCCGCGACCGCTGGCAGCGATCGCACCCGCACCTCGCCGGATCCGTCGCAGCCGTCGGCTACGACGCCGACACCGGGTGCCTGACCCTGCAGCCAAGCTCGGCGGTCCGGGCCACCGAGACCCGACTACGGCAAGCCCGGATCATTCAAGGCCGCGAACACGGCGTCGGGCCACACCGCGGCCCCCGCACCGCCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCTGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCTGCGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.00,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4217450-4217662 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001165.1 Streptomyces sp. Tu6071 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4217450 29 100.0 32 ............................. GCCGTGCCGTCCACGAAGAACGAGTCCGAATC 4217511 29 100.0 32 ............................. CCAGGATCGACGCGGAGCCGGTGCCGGAGGCG 4217572 29 96.6 32 ............................A ACCGCCCGGGACGCCTGCGAGATGGCGACCGA 4217633 29 96.6 0 ...........G................. | T [4217660] ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : GGGAGCGGCGGGCGTGACACTCCTGGCAGAGGCGGCCCGCCTGGTCCGCGAGGCGGGCTTCGAGATCGGCAACGTCTCGATCCAGGTCATCGGCGTCCGCCCCAAGATCGGCAAGCGGCGCGCGGAGGCCCAACAGGCCCTGTCGGACGCGGTCGGAGCCCCGGTCTCGGTCTCCGGAACGACAACGGACGGCCTCGGCCTCACAGGCCGCGCAGAGGGCCTGGCGGGCCTGGCGACGGCGGTGGTGTGGCAGGCGGGGTGAGGGGCGCGCGGGTCCGGGGAGGCCCGACGACGAATCGACACCTCGTACGGACCGCTCCCGACGCCTCGCGTCCCGCGCCCTCGCGGACGCCGTGCGGCGGACCGGCTTGGGGGTTGGTTGCGGGGGCGCGGGGGAAGGGTGACGGCGGGAGAGCCATGCGCGATCTGCCGGATATGGCCGAGTGTCCACTCCTTGCCGATATACCGGGCGCCACGTGACAAAACAGCAGGTCACGGAG # Right flank : CCTGCCGTCAACGACCACGTGCGGGGAATCCCGCCCGCCCTCACCGCCCCGCCGCAGGACCTGCTGCCCGGCCCGGGTGGGGTTCGGTGGGCCGCACGCGGGGGCTCTCCGTGGGGTTCGGCGCGGGCCGGTTTCTTTTCGGCTGCCGTCCCCGCTCCCGGCCCCCCTCTTCCCCCCGCCGCCCGGCCCCAGCACCGTCCCGCGCCGTCTACCCTGGACCCCGTGACTATTCGGCTGTACGACACCCGCGCCCGGCAGATCCGTGACTTCTTCCCGCTCGTGCCGGGCTGTGTCTCGATCTACCTCTGTGGTGCGACCGTGCAGGGCGCTCCGCACATCGGGCACATCCGGTCCGGGCTCGATTTCGACATCATGCGGCGGTGGTTCACCTACCGCGGCTACGAGGTCGTTTTCGTGCGGAACGTGACCGACATCGACGACAAGATCATCAACAAGTCCGCCGAGCAGGGTCGCCCCTGGTGGGCGATCGGCTACGAGAA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4260333-4260545 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001165.1 Streptomyces sp. Tu6071 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4260333 30 100.0 31 .............................. CGCGGGCCAGGTGGTACTGCGCGCGGGGGTG 4260394 30 93.3 31 ............................AC GGTTTCGAGCGCTGAGCCGTGGCGCAGCTCA 4260455 30 100.0 31 .............................. GGTCACCCGCGTCACCCAGTGGGGATACGGC 4260516 30 93.3 0 ............T................G | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 CTGCTCCCCGCGCGTGCGGGGATGGCCCCT # Left flank : GCGGTTCCCGCCTCGGCCGTACGGCCTTCGCCCGGGAAATACCCTCCGGGCCGTACGGTACGGGGGGCGCGGACGGGGCTCTGCGAGGCGCGCGGCGGGGCCCACCGACCCCCCGTACCCCGGCCTCTGCCCCACCGTGCTCCCGGGGATGCGCACCGAGCGCCCCCTGTGCCGGGATTCCGGGGCGGGGGAGGGGGGTTGGGGGCGGGGGAGGTGGCGGTGGGGATCACCGTACGGGGAATGCGGGGGGCGCGTCGTGGGGCCAAGAGGTTCCGGCGCCTCGGGGTGCGATCCGCTGCGTGGCGGCCCCGGGGGGCGAGCCGGCTGCGGGCGGGGTGGCCGTGGGGGGGCGGGCGTGGATGGGTGTGGATGGGCGTGGCCACGCGGGAACGGGCGTTAGGCTGCGGACGGTCCGAAGAGCTCGGGCGCCGAACCGTCTTGTCCGAAAAGCCGGACTCTCCACTTCTTGCCGAATCGACGCCATCTCGAAGCCAAAAGGG # Right flank : GTGGTGGACGCCGGGCACGCCGAGAATCACCCTTGCTCCCCGCGGTCACCACGAGACCGACTGGGGGTTGCGGTGTGCGGAATGCGCATCGTGGTCAGGTGCGGCGGGCGCCGCGCTACGGAAGCTACGACAAGCCGCAGCCCCAGCACACGCGGACCTGCGGCGTTTGCGAGGTCCGGTGCGGCTCTGGCGGCGACTGGTGGTGAACGTCAGATGTGCGCGCCGTCGAGGAAGTGCTGCCACGCTGTCGGGCTGAATCCAAGGTGCGGGGAAGCGAGATCCTTGGAGTCGCGAACGGCTAGCCGGCCCCGGGAGGTGGCGACCTCGACGCAGTTGCCCTCGGTGCCGGAGTAAGGGGACCTGATCCACGTGGGATGCTGTGGATCGTCGTGCTGGTGGTTCACTCGCCTGCCATTTCGTTCAGGACTCTGCGGATGAGAGCCCGCGATTTCGGGGGGTCGAGCGCGGCCATGTTGAGGCGCCGGAAGAGGGCGGCGAAT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGCCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4262907-4263119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001165.1 Streptomyces sp. Tu6071 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4262907 30 100.0 31 .............................. ACTCCGCGATCGGCCCCAAGTGGGGCGACAG 4262968 30 96.7 31 .............................C ACCCGGAGGCTTCACACTTCGGGTCGTACTC 4263029 30 96.7 31 .............................A GGCTTTCTGGCTCGGCGACTTCGGCGTGGGT 4263090 30 93.3 0 .....T......................G. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : CCGCCAACGGGCGGGAGGTGGCGGCCCGTGCGACCCCTGGCGCGTGACGCGGAACGGCTGCTGTACGAGGACACGGCGGTCCCCGGCTTTCGCGTACGGAGCTGGTGTCTGATGTGTGGGAGGTACTCGCCGGAGGTCGTGAACGCGGACTCGGCGCGGATGTGGTGCCTGGAGCACAACCGGACGACCGGCCATGCCAGTTATCGCGTGGCAGAGACGCAGTACTTGGTGGTGGCCCGGGAGGTGGGGGAGCCGGGGCGGTGTCGTTGTGGGAGGGGCGAGTCGGAAGGCTGAGGGGGGGCGCGAGGTGAGGTGGTGATGCGGCGGGGAGTGCCGCTGGCCGGCTAGGGGGAGCGTGGCAAGTCGGAGCGAGGTGCCGCAGGGCTAGGCTTCGAGCGGATCGCGCCTTGCGACGGCGGTCCGCTACGCCCGAAAGGTCGGATTCCTCGATCCTTGCGCAACTGCCGCCATTGGCCCGCTAAACCTGCTGGTCACGCAGT # Right flank : GGAACGGCGCGGAGTCGCTGAAGTGGATGGGCTGCTCCCCGCGTGCGAGGAATTTTCCGCTGCGGGACGGCGCCGCAGGATCGGCCTACGCCGATCCGGGCCGTTTCAGCAGCAGTTCGTCCCCCGCGCGGAAGCGCTCGGCGCCGCCTTCCTCCCATGTCACCACCACGAACAGGTCACCCACGTACGACCACGAAGCCTGCGGGGTCACGCAGGCCGGGGGATCGGGGCGCAGCTCGCCCGGCGGCTCAGTGGTGCGGGTGAGCCGCTCGTCGATCTTGCGTGACTCGGCCTGGGTCGCTTCGGCGAGTGGGATGCCGGTCGGATACGTACGCCGCGCCCCGGCGCTGTCCGGGGGGTGCGCGCCCGTCCGTCCTCGCGATCCGTCCCGCTATGCTCCACCGCATGTCCACCAGCACCCCCGAGCCCGCGCGGCGCGGTCTCCTCACCGAGCGCATCGCACGCGAACTAGAGCACGGGATTCGGACGGGGGAGTACGC # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4264399-4265584 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001165.1 Streptomyces sp. Tu6071 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4264399 30 96.7 29 .............................A GGGTCGCGAGGTCCGGCCCTGTCGCCCTT 4264458 30 100.0 31 .............................. ACCAGCTCCTCCGCATCGTCGAGCGCACGGG 4264519 30 100.0 31 .............................. GGCCGGTCGGTGGCGCCCCAGCCCAGCGCCT 4264580 30 96.7 31 .............................A GTCACCCAGCGTGCCGCCCAACACATGGACT 4264641 30 96.7 31 .............................T CCGCCTTCATCGCTCGGGTGGTCATCGACCG 4264702 30 100.0 31 .............................. AGGAGGTCTCCCATGCGGGTGCCGTCGCTGC 4264763 30 96.7 31 .............................T CGGCGCGGTCGAGCGCGATGGCGTCGCGGAC 4264824 30 96.7 31 .............................T GGGCGGTCTCGTGATCGAGGTCGACGAGGGC 4264885 30 96.7 31 .............................T GCGGTGAGCCCTTCAAGCTCGTGCCCCATGT 4264946 30 96.7 31 .............................A GTCCACGAGTGGATCGTTACGCCGGACGACT 4265007 30 96.7 31 .............................T CGGCGGCAGCGTCGGGCGGATCGGCGACGGC 4265068 30 100.0 31 .............................. TCTCTCGGCGCCTGGGCTGGAAGGACGACCC 4265129 30 90.0 31 ..........................GA.T TCGGGTCGTCCGTCTGGCGGCCGTGGCGGGT 4265190 30 100.0 31 .............................. AGGCGTACATCACCGGCGCCCCGGGACACGT 4265251 30 90.0 31 .....T......................TC ACTCGATCGCGCCAGGTGTTTCGGGACGAGA 4265312 30 96.7 31 .............................A AGGACGCGGTCGCCTCGACTTCGAGGCCGGT 4265373 30 100.0 31 .............................. ACGTGGGCTGCGGAGTCGGGTACGAGTGGCT 4265434 30 100.0 31 .............................. GCCGGCGACATCGGCTGGGACTGAGCGAACA 4265495 30 90.0 30 .................A.A.........C GACGGCAGCGCCGGTCTCGATCCTGGGGGA G [4265521] 4265556 29 73.3 0 .....T....A..C.C...TC..-.T.... | ========== ====== ====== ====== ============================== =============================== ================== 20 30 95.7 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : ATCGCGGTCATGCGGGCCGCCGTCGTCGCCCTGGAGTGCGCGGACGAGCCGGTGAGCAAGGCGCGGGCGGACCTGGAGTTCCACGAGGCCATCGCCGTCGCGGCCGGAAATCCCGTACTGCGGATCATGCTCTCGTCCATCAGCGGGATGATGTTCGAGATGATGCTGCGCTCGAATTCGGACCCGAGCATCGCCGAGCCGGGCGTCCCGCACCACCCGGAGATCTTCGAGGCCATCGAGCGCCGCGATGCGGAGCTGGCGGTCGAACGGATGCGGGCGCACCTGCGGTTGGGACTGCGGACGTACGGGCGGGACCTGGACGTGCAGGTGGATGTGATGGCGAAGCAGCACATTGAGATGTTGTTGGGGGAGGGGCGGGGGTGAGGGGGGACGGAGGTCGGGCCGCCATGGGTTGTATGTCGGATGTTGTAGATATGCCGGAATTTGCAATTGTTGCGCGCACGGCTCCGGGGCGGGGGTAAACCCCCAGGTCGGAAAGC # Right flank : GCTCCAGCGGGATGGGTGAGCATCAACGGCGAGCGCCCCCGGTATCTGACGGCTCCCCTCCCGCCCCATCAATCCCTCCCGCCCCCTAGCCTCCCCCCTCGCCTCCTGCTAGCCTCCCTCTCGCCCGGCCCAACTGGTCCTACCAGTCGGACCGCCGAACCACCCGCCCCCGAGGAAGCCCCCGCATCCGCCCCCACGCCCCCGTCCTACCCCGTCCCCCGCCCCAGAGAGGTGGCACAACGATGTCCACCCCCCGGCCCCCGGTCGGCCGCCCCGCAAGCCACCGGCCCCCGACCGGCAACCCTGCCAACCCTCCAGGCCCCGAGGCCCCGGCCTCCCGCCCGGCAAGCAGCACGCCCGCGCGCCCCGAACCCCCAGCCCCCCACGCCGCACGCAACGCACCCCCCACCCCGCCCCCTTCCACGCACCGCCCCCCGCTCGACGAGCCCGCATCCCGCCGCCCCCCAGCCGAGCGCCACCCCCACCACGAGCCCGCCACA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 56109-55596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001166.1 Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 56108 28 100.0 34 ............................ GGATTCGCCGGTGGCGACGTTGGTCACGGTGATG 56046 28 100.0 33 ............................ GTCTAGCCGCCGTAGTGCTTAACACACGTTATG 55985 28 100.0 33 ............................ GTGAGCGACGACGCGGGCGGCGATCTGGCCCGT 55924 28 100.0 33 ............................ ACCACCACGACGAACACGGCGTGGACGCTCCGG 55863 28 100.0 33 ............................ CGAGAGGGACTCGTCCGCCCGGTGAAGCGGCGG 55802 28 100.0 33 ............................ GGCGTTCGGGGTGAGATCGAAACTCCACGCACC 55741 28 100.0 33 ............................ GCAGATGGGCTGACGCGTAGAGTCACCCAAGAA 55680 26 89.3 33 .........A......--.......... GGGCCGGTCGTCCAGCTTCACCTTGATCTTCGC 55621 26 92.9 0 ................--.......... | ========== ====== ====== ====== ============================ ================================== ================== 9 28 98.0 33 GTCGAGCCCGCGCGCGCGGGGATGCTCC # Left flank : GCCCGAAGGAGCCGAGTTCGAGGACTCCGAAGCCAACCTCCTGTGGGACGAACAGGTCGGCGCAGTTTCCGGGGGAACCAACTACGCCGACTCAGCAGATTTGTCCGTCTACGGAATAGGAGACAACCACATCGCGGTCATCGGTCCCGATCTCGACGAAACCGGCCCCACCTCATGACCATCATCATCCTCGTCGCCGCCTCAGACGGACTACGAGGCCACCTAACCCGCTGGATGATCGAAGCCAGCGCAGGCGTCTTCGTCGGCAATCCCAGCCGCCGCATCCGAGACCGCCTCTGGGAACTCCTCGCCGCCCGCATCGGCGACGGCCAAGCAATCCTGGTCGAACCAGCCCGCAACGAACAGGGTTGGGCAGTCCGCACCGCAGGCCGCAACCGCTGGCAACCGGTCGACTTCGACGGCCTTGTTCTCTCCGCCCGTCCCAAAAACAACTGAATAAAAAAGGCCACTTCTGCCAGTAGAACTGCAGGTCAACAAGT # Right flank : GAGGTAGGCCCCGACTTCGGGGTCGGCGGCGATCCGGCCGAGCAGTGCCTCCTCGGAGAGGGCGGCCGGGTTCCAGAGGAAGACATCCGCCCCTGGCCGGCGCCTTTGCGGTCAGAGCGCTAGCTTGGGGCAGGCAGGTTCCGGCGAGCGTGTTCGATGAAGGCGGTGACGCGCTTGTCGCGCTGTCGGGTCGCCAGCATGGTCGTGAGGCTGTGGACGTACCCGTGGGCGCGAGCGGAACGGACTTTTGACAGGAGCTGCACTGAGTGGTCGGCCACGGCCAGGCCCTGTTCCAGGTCGTTGTTGTGCAGGTGCGCGGATGCTTCCACCGCGAGCCGGATGCCGACCGCGCGGGTGTAGCGCTGGGCTGGCATGGTGTCGGCCTGCTGGCTCCAGGTGAGCGCGTCGTGTGTGCGGCCCAGGTCGCGGTAGATCTCGGTGGCGTCGGTGGCCAGGCGCTCGCGGGTGTAGTAGGCCATCCACGCCGGAGCCGTCTCCGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGCCCGCGCGCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 66088-68311 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001166.1 Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================== ================== 66088 28 75.9 32 ..T.C........CT..-......C...A AGCTGGACCTCATATGGCAGGACCCGTCTGGC 66148 29 89.7 81 ....A..............A....C.... TTGAGGCCGCAGCCGGGCATCCACTCGCTCAGGTCGCGGGTACCCTCCTACCCGTCGATCCACCGGTCGTGAAAGCCCTCG 66258 29 72.4 36 ..........T..T..TA.....GGGG.. CCCGGACCGTCCTGGTGGCGACATCAGCGTGACGGC 66323 29 86.2 32 ....A..T.....T..........C.... ATCCTCGCGCGCCTGGAAGCGGACGGTCCGCT G [66344] 66385 29 86.2 31 ....A.T..A...T............... GCCGCTCGGTGCGCGCGCGGCGAGCGATCCT 66445 29 75.9 164 ........T....TG.T.......AGT.. CGCCGCCGAGCGGCTTTCGGGGGTTTTCGGGGGTTACGGTGTTGACGTGGAGGGTGAGAGCTGGTGGGGGCGAGCTGTTGTTTCTGTTCTGGGCTCAGTAGCCGGCCGGAAAGCAACTGAAGGAAAACCGGCAGACCGGCTGGTATGACTGCAGGTCAGCAAGC 66638 29 96.6 32 ............................A GCTGACCCGGGGGCGTCGCCGGGAGAACGAGG 66699 29 100.0 32 ............................. GGCGCGGGCGGGGGGCCGGACGTCCTCAACGG 66760 29 100.0 32 ............................. CGTCTGCGGGCCGCCTGGCGGCGCGTCGGCGC 66821 29 100.0 32 ............................. GTCTCGTTCAGCGAGGCCGCGCTCGAGCGGGC 66882 29 100.0 32 ............................. TCCCACAGCCGGTAGAGCATCTGGAACGGCAC 66943 29 100.0 33 ............................. AACCAGCGTCGGCGTGACAACAAGGGGCAAGGT 67005 29 96.6 32 ............................T GGTCGTGAGCTGTTCGCCGATCAGGTGCACGG 67066 29 100.0 32 ............................. ACGCAGGACGGCCGCTCGCCCGCGCTCGAACT 67127 29 96.6 32 ............................C ACGGTGTCGGTCGGGATGAGGACCAGTGGCAT 67188 29 100.0 32 ............................. CGGATCAGGGGCAGTCGTCGCAGGCTCCACCG 67249 29 96.6 32 ........................C.... CGGCTGCACGCCTCGCGGCGGCGCGTCGGCGC 67310 29 89.7 33 ............AG..........C.... GACAAGCCGTACCTGTCCGCCGAGTCGGCTCCG 67372 29 93.1 32 .............C..........C.... ATCGCCTCCGCGAGGCCGAAGCGAGGGAGGTG 67433 29 93.1 32 .............C..............C AGGCCGGGTGCCTCCGGCTCGGCACGGCGGGC 67494 28 89.7 31 ....A................-..C.... CTGGAGAGCGGCGGCGCGCGCACCTGGCAAG 67553 28 82.8 32 ...-.A.T.....T..........C.... GCGCCCTGTGCTCCCCCCTCGGCCCGCTGGGT G [67570] 67614 29 75.9 28 CC..A........T...A......C...T CCGCTGGCTCGCCGACGTGTTCAGGGCC 67671 29 86.2 33 A.......A....T..........C.... GGACTCTTGCGCGAGGCCGCAGGCACACCGAGC 67733 29 75.9 155 ....A....A...T..TA.A....G.... CGCTCTCGGTGTGGCTGGCCGGCGATACGGTGTACGTGTGGGGGTGAGAGCTGGTGGGTTCGGGCGGTTGTTTCTGTTCTGGGCTCAGCGGCCGGACCGGAAAGCCACCGAAGGGAAACTGGCAGACCTGCCGGTATGACCGCAGGTCAGCAAGT 67917 29 79.3 32 ..T.C........CT........T....C GAGCCTGAGCGCGAACAGGCGCTCGGGAGGAT 67978 29 79.3 32 ..T.C........CT........T....T ACTGGGCGTGTGCGTCGGTGTTCCCACCGATC 68039 29 82.8 32 ..T.C........CT........T..... GACCTCTTCGAGTCGTTCGCCGCCCTCGCCCG 68100 29 79.3 32 ..T.C........CT........T....C TCACCAGCTACGACCGTCCCACCGCCCGGAAC 68161 29 82.8 32 ..T.C........CT........T..... AGCAGCCGCAGACCACCGACGTGTGGAACGTG 68222 29 82.8 32 ....C.......TCG........T..... TCCACCCCCGCCGCCTCGGCCCCGGACATGTG 68283 29 72.4 0 ..T.C......A.CT....A...GC.... | ========== ====== ====== ====== ============================= ==================================================================================================================================================================== ================== 32 29 88.1 42 GTCGGCCCCGCGCACGCGGGGATCTTCCG # Left flank : ACACAAACAACCCACGCCCACACCCCACCCCACCCGCCACCTCATCCAGCGCCGAACGCGTCGCCGGCGCCAAGAACTCCTCCCACATCAGCTCCGCAACCGCCGCCGTATCCAGCAGATGCCCCAGCAGAAGACTCGTCCTCCCCGCAGCCCTCTCCCGCGACTTCCCCCACAACGTCTCCAGCCCCCGCACCACCGCCGCGCCGTACCTCAACGCCAGCTCATTCACATCCACCGAAAACCCCCACCTCACACACGAATTCGAGAACCGGATCGTAAACGGCACCACCGACAACACCCTCTGAACTGCACAAACGATAAGGAGAATCACCAAAACGACACCCGCCACCCCCGACCCCGTGATACAAGGGCACCGCCCGAACCCAGATGGGCTGACCCGCACCCGCAGGCCCCCACCCCCCCACCGCCGCGGCGACACGCGTGCCACCCGCCGCCAGGGATGTTCCGGGCCGCTTCGAGGAGACAGGCAGCATCGCCCG # Right flank : GGTTCGGTGGGCGGAGTGCCACGGCTCGATCGGGGCCGGGTTGTCGCCGTGTTCGTTGGTGTCATCGCCTATGGGCTTCTCCTCTTCTTGGTGGATGAGGTGTTCTGCGTCCCGAGTGGGGCGGAAGTCGTAGGTCACTCTGGGCTGCACGGCCCCTTCTCAGCGTAGGACGTGAGGCGGTACGACTCACGTCCAGGGCTGGCAGGCGAAGAGACGGCCGGCCGTGCCGGGGCCCGACATGGGTTCCACGACATCGATGAGGGTGACGTCTTCGGCGAGGCCGCGGTGCCACGCGCACCAGGCGATGGTGCGGGCGAGGCCGCCGCTTATCGTTCGTCCCTGCCGTAGCAGCAGCGGCGGCAGCCGCGGGGGAACCAGGCTGGCCCGGTGCGGGTGGCGGGGCGGGCGCCGAGGTCGATGTCGTCGATGCCGGGCTGGAGCGTGGTCTCGCACCACACGCAGGCGGCGCCGCGCCGCTGCTCGGCCGTGAGCGTCTCGAC # Questionable array : NO Score: 4.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-0.84, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATCTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [37-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 71267-72208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001166.1 Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================================================== ================== 71267 29 100.0 32 ............................. ACGCTCGGTCGTGGCCTGGGATGCCCGTGCTG 71328 29 100.0 32 ............................. ATGGACACCCCCGACGAGGACTTCCAGACGGT 71389 29 96.6 32 ............................A AACAGCAGGTCAGCGACATGCCGGAAGTCGAA 71450 29 100.0 32 ............................. GAAGGTCGCCTTCTCGGGTTTCACGGATGCGG 71511 29 100.0 32 ............................. CAGGTGCCGCAGAGCGAGCACTGCCACATCGA 71572 29 100.0 32 ............................. CACTCGTCCTCGTAGCCGTGCGTCACCCACCT 71633 29 100.0 32 ............................. CGGGCTGGGTCCGTCGGTAAGACGACCGTGGG 71694 29 82.8 32 .............A.........CCT..A CGGCGGCCTCCACCGCCACCGCGCTCATCGGC 71755 29 69.0 32 G.C.G......GA..........CCT..G CGGGCGAAGCGCTGCGCGACCTTCTCGCAGAA 71816 29 69.0 32 G.C.G......G.C.........CCT..G CCGTTGTAGACGTTCACGACAGACCGGTCCTG 71877 29 69.0 32 G.C........GT....A.....CCT..G TGCGGACTTGAGGTCATCGCCAGACATTTCCG 71938 29 69.0 213 G.C.G......G.A.........CTT..G ACCGCTCGGGGCGGCGCGCCGGCCGAACCTGTCGGCACCGCGCTCGTGGGGATCAGTCGCGCCGCCGAGTGGGTTTCGGGGGTTACGGTGTTGATGTGGAGGGTGAGAGCTGGTGGAGACGGGCTGTTGTTTCTGTTCTGGGCTCAGCGGCCGGTCGGAAAGCAACTGAAGGAAAACCGGCAGACCCGCTGGTATGACTGCAGGTCAGCAAGT 72180 29 69.0 0 G.C.G......GA..........CCT..G | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================================================== ================== 13 29 86.5 47 ATGGTCCCCGCACGCGCGGGGATGGCCCC # Left flank : GGAGGCGGGCGCCGCCCGGGTGGCCCGGTCTCGGGTCATCTACGAGCCCGGCCACCGCTTCGTCCTCCTGATCGAGGAGGCCGCCCTCTACTACCGGATCGGCGACGACGAGGCAATGGCCGCCCAACTCGGCTTTCTCCTCACGGCTGGTGCCCTGCCCGCCGTGTCGCTGGGCATCGTCCCCTCGTCGCACCCACAGCGTCGGCAGTGGCCGCACGAGACGTTCCACATGTACGACGACGCCTTCGTGTCGGTCGAACTGCTCTCCGCGCAGGTGAAGCTGACCCAGCCCTCCGAGATCGCCCTGTATTTGCGGGCGTTCGAAGAGCTGCGGAGCATGGCCGTCTACGGCGCGGACGCGCGCGCTCTGGTCGTGCGGGCGATCGACGCGTTGCGGTAGCCGAAACGGTAGAGGCGGCCCTCCACGCGCGTGGCGGGGGAAGGTCGCTGAAGTTGCTGAAAACCGGCTGCCGGGTCAGTAACGTTGCAGGTCACGAAGT # Right flank : GTACAAGCTCCACATCTCGGGGACGGAGCTGTAGTCGGCCCCGCGAGCGCGGGGATCCTCCGGGCAGCCATGCCCGGCATCCTGCCGCCGCCCCGTCGGCCCCGCGAGCGCGGGGATCCTCCGCAGAAGACGCGGGCGTTGGCGGGAGGCCGCGTGTCGGCCTCGCGAGCGCGGGGATCCTCCGATCTACTGCTCCGAGGCGTGCAAGAAGCGCGGGTCGGCCCCGCGAGCGCGGGGATCCTCCGCCCCAGCCGACGCCGGTCACCAGGGGCGAGTGGTCGGCCCCGCGAGCGCGGGGATCCTCCGCTCTGCAAGGTCTCCCCGAGGCGGTAGCGCCCGTCGGCCCCGCGAGCGCGGGGATCCTCCGTCCTTGACGTGCACCACCTCATCTCCCCAGGAGTCGGCCCCGCGAGCGCGGGGATCCTCCGCCGTGGTCGCCCCCGAACAGGGGACCCGATGCGTCGGCCCCGCGAGCGCGGGGATCCTCCGGGTCGCCTGCA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 75671-76492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001166.1 Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75671 28 79.3 32 ..-.A.T......A............G.T CCATCCCGGTCAGACAGGTGGAGCGACTGTTC 75731 28 82.8 33 ...A.......TTG...-........... GGTGGCGAGGTGTCACTCCTCAACGCCGTCGTC 75792 29 86.2 32 .C..C........A..........T.... GAGTTGGCGTTCTGGTCTGCGGACCGGAGGGG A [75796] 75854 29 89.7 32 .C..........TC............... CGGCAGACCGCCGACGCCGAGGCCGTAGCGCA 75915 29 93.1 32 ............TC............... CGGTACGTCAGGTCGTTGGTCGTCGCGTTCGG 75976 29 100.0 32 ............................. GCCACGACCTCGGCGGCGGCCAGGATGAGGAC 76037 29 100.0 32 ............................. TTCACCTGTCCGCTCTTCTGCCCGGCAACCTG 76098 29 93.1 32 ....A.......................T TGCGAGACGCCTCCTGCACGTCCCCGAGCGCC 76159 29 96.6 32 ....A........................ CGGCTGATGGTGGAGGGCGGTGGGACGATCCA 76220 29 96.6 32 ............................T CGTCGGCGGGAAGTCGTGAGGACGTGACGGGA 76281 29 100.0 32 ............................. GCGGCGACGGCGCGCTCCAGGCGCTCTCGCTC 76342 29 100.0 32 ............................. TCCATCTACGAGGACACCGCCGCGCACGTCCT 76403 29 93.1 33 .............C..............C GAGATGAACCGGTCCGCCGCGCCGAGCCCGGCC 76465 28 89.7 0 ..............-........T....C | ========== ====== ====== ====== ============================= ================================= ================== 14 29 92.9 32 GTCGGCCCCGCGCTCGCGGGGATCCTCCG # Left flank : GACCCAGATCATCAGCTGGAGCTGCAACTCCATCAGGCTGACGATGAAGGTCCATAGCTCGTAGTCAGGCCGGTCATTGCAGATCAACGCCGCTCCCTTGACCCCGCTTTCCGCAGTGCGGCCGTGGCGGGGGTCGATTCCATCCGGCCGCGCGGACCGGGTGGGACAGCAACTCGTCTGTAGACGACTACGCCGAGGTCGACTCTAGAGGTACGTGTGCAGCGAAAGATGCCGTTCATCAAAAGCGCTCATATTTGAGGCGCAATACAACACGCGTTCTTTCATAAGTGATCCCTTGGGGCTCGCAACACGATCATGGGCGGGTCTTGTTAGGGCGTCGGTAGCAGATGAGGCTGCAGACGAGGGAGACGAAGGCGTCGTGGAGTTCGGTGCGGCGTTCCCAGCGGACGGCGAGGCGTTTGAACTGGTGGAACAGGGCGATGGTCTACTCAACGACGTAAGCGGAGTTTGCCCAGGCCCTTGATGTTCGGACGCACTCC # Right flank : CTCCATGCCCGGTCAACGCCCGACCCCCGACCGGACTGGCTGGAGCACCGGCGAAGTCGGTGGCCGAACACCGCGAATCTCCACCTGCTGATCAACAACGAGACCGCCACCAAGACCAGCCGAGCCAGTAACCACTGGATCAGCGCCTCAATGCGAGGGCAGGACGCGACACTGGAGCGGCTCCGCGTCGAACCGGCAACTCGAAGAGGTCCTGACCCACGGGCCCGATCCACTCCATCTCGCCGAGGTGTTCGGTCTCGACGAGAAGACAGCGATGCGCTACGCGGACTCCGCACGATCCCTGCTGAAACAGGGCGCTGAACAGCAACTTCGATGAAACCTGCTCGACCAGGACGCACCGTGGAGGGAATCATGGGCGAGTGACGTCGACCGAAGCAGCAGCAATCGCTCTACAGGACCATGCCGCCCTCTGGAGCATGGGGGAAATCCGTGCGAGCGATGTCGTCAATGCCGCCTGTGAGGCGCTCGTCGCCGGACTC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATCCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 77641-79951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001166.1 Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 77641 29 79.3 32 ..T.C........CT........TT.... ATCCCGCCGTGGTTCCAGGCATGCCTCGACCT 77702 29 79.3 32 ..T.C........CT........TT.... ATCCCGCCGTGGTTCCAGGCATGCCTCGACCT 77763 29 79.3 24 ..T.C........CT........C....C TCCATGCCCGGTCAACGCCCGACC Deletion [77816] 77816 29 93.1 32 ....A..................C..... GTGGCTCCGATGCCCGTCTCCTACCGCGACAT 77877 29 79.3 32 ....T.......TG........CCT.... ACGGGCGTGCAGGCCGGTCTGGAGCACATGCA 77938 28 75.9 32 ..T..-..G...GG.........CT.... GCCGCTCGGTGCGGCGCGCGGCGAGCGATCCT 77998 28 82.8 153 ........T....TG.T.......-.... GCCTCCGTGCGGCTGTCGGGGGTTACGGTGTTGACGTGGAAAGTGAGGGCTGGCGGGGGCGGGCTGCTGTTTTTGTTCTGGGCTCAGCGACCGGCCGGAAAGCAACTGAAGGAAAACCGGCAGACTCGCTGGTATGACTGCAGGTCAGCAAGT CA [78021] 78181 29 93.1 32 ............AG............... CCCACGACGAAGCTGCTCGTGAGCCCAAGCGC 78242 29 93.1 32 ............AG............... GCGTCGCGCACGTCAACTACAAGGCGTCCGCA 78303 29 93.1 32 ............AG............... GGCCGGGGGATTGCGCCCTCCGGCCCTTCCCG 78364 29 93.1 32 ............AG............... CGCCTGGTCATCTCCATCCTGCGCAACGACCA 78425 29 93.1 32 ............AG............... ACCGCGAAGAGGACTTCGGCCAGGGAGAGGAG 78486 29 93.1 32 ............AG............... TCGTCCGGGTCGTTCGGCGAGGTCCCGGCGCC 78547 29 93.1 32 ............AG............... CCTTCGGGTCGTGATGCATAGGTGTGGCGGTC 78608 29 93.1 32 ............AG............... AGAGGAGCTGGAGCCGTGGCCCCGAGAGAGCC 78669 29 93.1 32 ............AG............... TACCAGGCATCGAGGGGTCCCCAGCCGTCGCG 78730 29 89.7 32 ............AG..............T GATGCCGGAGCGGATGACCAGTCTGATCCGAG 78791 29 100.0 32 ............................. GTCTCCCCGCCGTCGTCGAGGACGAGAGCGAG 78852 29 100.0 32 ............................. GCGGTGGCGGCATGAGTATCCACATCCCGCAC 78913 29 100.0 19 ............................. TGAGCAGCCCTTACGTCCC Deletion [78961] 78961 29 100.0 32 ............................. GGTGGTGGAGCGCCGCTCTCGACCGGCGTGGG 79022 29 100.0 32 ............................. GTCTCCCCGCCGTCGTCGAGGACGAGAGCGAG 79083 29 96.6 32 ............................T GGGCCATCCGTCCGCCCGCAGCTCCCGCATAC 79144 29 96.6 32 ...............C............. GCGGTGGCGGCATGAGTATCCACATCCCGCAC 79205 29 100.0 19 ............................. TGAGCAGCCCTTACGTCCC Deletion [79253] 79253 29 100.0 92 ............................. GGTGGTGGAGCCAAGCCCTCGCCAGCCAGGCCCTCAATTTCTCGCACGCGGAGCGTCAGGCCGACCACGCGCACTGGGGCACCCTCCGTGAT 79374 29 100.0 32 ............................. CGGCCTACGCGCACGATGACCGGACGCTGCAG 79435 29 100.0 32 ............................. GCCGTTCCACTGGGGTTGGCCCGCGATGGGCC 79496 29 100.0 32 ............................. CTCGGCCAGCGCATCACCAGCCGCCTCTCGCA 79557 29 100.0 32 ............................. CCGGACTGCGGCCACATCGTCCCGCCCCGACG 79618 29 100.0 32 ............................. CTGCGGGGTCTTGTCGACGCGCTGCTCTGGCC 79679 29 96.6 32 ............................T CCCCGCGCTGCTCCTCGGGCAGCCGGACCACG 79740 29 96.6 33 .......................C..... TCCACGACGCCGAGCTCTACCGGCTTCATCCAA 79802 29 82.8 32 ..T.T..T....GG............... CACTTCCTTCAGGCTCGTGAGATGTTCCTGGC 79863 29 75.9 32 ..T.....T.G.GG........CC..... GTCGTCCTCGGCGACCACGACGACGACCTCGG 79924 28 72.4 0 ........TA..GGT.T......-....T | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 36 29 92.1 36 GTCGGCCCCGCGCACGCGGGGATGCTCCG # Left flank : GCTCGCACGCCGCATGCTCGCGGGTGAGCTGACACCTCGGGAGTTCACAGTCCGCATTCACCAGCGCTACGGACATGAGCTGCCACTGACTGAGCGGCTCGCCGAACTCGATGACGAGTACGACGTCCTCGAATACGGCGACGGAACCGTGGACCACGTTGATGTCGAGGTCACCGCCGAAGCGCGCCGCCTCGCAGCCCACCCCCACGTTCCAGCCGAATCCACGGACACGCCCAGCTGATGCTCACGGACCGACCGCGAGTTCCCGCCGAACAGGCTTCAGTTTCCCTGAACCCATGGGGCTCCCCGGGTGTGAGTAGTTGCGGTACAGGAAGTGCCGTTGAGATTGATCATGGTCCGGCTGGGTGTCGGGGTGAGCGGGTCGTCCGGCTGCCGGATGCGAACTCGGCGGGGCGGGGGATGTCGTCAGCGTCCTGGAGATCGGCGAAGTCGGCGTGCGCCTGGGCGACGGCTTCGCTGCGCTGGCTGGCTCAGAGCGG # Right flank : TGAGGGGTGCGGGCGACGGGGAGGAGGGACGACCCCGCGCTCCCGGGATCGGTGGCGTTACGGGGGTGGCTGGGCGGGGCTACGGTGTTCGTATGAGCGGTGGTGAGAGCTACTGGGGCTGGGGTCGGGCGGTCGTTTCTATCCTGGGCTCCGCGGCCGTTTGAAAAGCGACCGAAGGAAAACTGGCGGACCAGCCGGTATGACCGCAGGTCAGAAAGTGTCGTCCCCGCATGCGCGGGGATCCTCCGCCCATGAGCCTGCCGCCGCTCGGGACGGTGGGGTCGTCCCCGCATGCGCGGGGATCCTCCGCGGTCTTGTGCGGGGTGGAAGCCGGGCCGTGGGTCGTCCCCGCATGCGCGGGGATCCTCCGCACCGGTTGTACCAGCGGTATCTGGACGCGTGGTCGTCCCCGCATGCGCGGGGATCCTCCGGCGCTGACGGCCAACGGGCTGTCGACGTCCGGGTCGTCCCCGCATGCGCGGGGATCCTCCGGAGCACAT # Questionable array : NO Score: 4.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.49, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGCTCCG # Alternate repeat : GTCGGCCCCGCGAGCGCGGGGATGCTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 80170-81174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001166.1 Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80170 29 100.0 32 ............................. CCCATGAGCCTGCCGCCGCTCGGGACGGTGGG 80231 29 100.0 32 ............................. CGGTCTTGTGCGGGGTGGAAGCCGGGCCGTGG 80292 29 100.0 32 ............................. CACCGGTTGTACCAGCGGTATCTGGACGCGTG 80353 29 100.0 32 ............................. GCGCTGACGGCCAACGGGCTGTCGACGTCCGG 80414 29 100.0 32 ............................. GAGCACATGCGGCAGGCGAGCACCAACACGCG 80475 29 100.0 32 ............................. AGGAGGGGTGGTACCCGCGCGAGCCGGAGTGG 80536 29 100.0 32 ............................. GCCGTGACCCGGGCCGCCCTGGAGGAGGTCAC 80597 29 100.0 32 ............................. GCCAACGGCATCAAGAACGTCAACCTGATCCG 80658 29 100.0 32 ............................. TTCTGCGTACGGGGCCTTCGGCGTGCACGAAC 80719 29 100.0 32 ............................. CTGGTCAACGCCATCACCGCCCGTGTCGAGCT 80780 29 96.6 32 ............................C TGTGCGCGCGAAGCTGCGCCTCGCAGCTGGCC 80841 29 100.0 32 ............................. CGGGCGCTGGAATGGCTGCGCGCCCGCGCGAC 80902 29 100.0 32 ............................. AGAGCACGTCATGACGGACACCCTCACCCCGG 80963 29 100.0 32 ............................. ACCGGCACGAGGGCGCTGGTCGTCACCGGCCG 81024 29 96.6 32 ........................T.... CCGAACATGGTGGTGATTTGCTCGATGAGGCC 81085 29 72.4 32 ....A..TT..GCC........C.....C CGGGCTTGGGCTGCCACGCGCCCATGGACCGC 81146 28 79.3 0 ....A......G....-....CC.G.... | T [81170] ========== ====== ====== ====== ============================= ================================ ================== 17 29 96.8 32 GTCGTCCCCGCATGCGCGGGGATCCTCCG # Left flank : GCTCTGGCCGTCGGCCCCGCGCACGCGGGGATGCTCCTCCCCGCGCTGCTCCTCGGGCAGCCGGACCACGGTCGGCCCCGCGCACGCGGGGATCCTCCGTCCACGACGCCGAGCTCTACCGGCTTCATCCAAGTTGTCCTCGCGGGCGCGGGGATGCTCCGCACTTCCTTCAGGCTCGTGAGATGTTCCTGGCGTTGGCCCTGGGGGCGCGGGGACCCTCCGGTCGTCCTCGGCGACCACGACGACGACCTCGGGTCGGCCCTACGGGTGTGGGGATCTCCTGAGGGGTGCGGGCGACGGGGAGGAGGGACGACCCCGCGCTCCCGGGATCGGTGGCGTTACGGGGGTGGCTGGGCGGGGCTACGGTGTTCGTATGAGCGGTGGTGAGAGCTACTGGGGCTGGGGTCGGGCGGTCGTTTCTATCCTGGGCTCCGCGGCCGTTTGAAAAGCGACCGAAGGAAAACTGGCGGACCAGCCGGTATGACCGCAGGTCAGAAAGT # Right flank : GAGGCTTTTCAGGTCGAAGAGGAGGGCCTACCGTCCTGGTATGTCCACAGGAGACCGGCAACGCCGCGACGGGTCCGCGAGACGAGTACGGCTGACGAGCGGCGACCACGGAGACCGCAAAAGCAGAAAGGGTAAAAGGCCGCGCCTCACCAAACCGGACCGTCCCGCGATCGACCGGGCGTGGCGGGAACTATTCGACAGGCTCAGCAAAATCAAGCAGCGTGAACAGGCGCGAGCCCGCAACGAACCTGAAGCACCGTAAAGCAGCGTTCCTCTCCCCGTGCCACGGCAAGCGCGTCGAACCCGCGCGCGCGGAATCCTCCCCGGTGCTCGCGGCGCGGCTCGTCAATGTCCCCGTCGACGCAGCGCCCGCGGGGATGGCCTGCCTGCGCCGGGGCCGAGGCAGGTCGCGGGGAGTGGCCCCGCGTCCGCGGGGATTCTCCGCCCCGGTCTCTCTTGGGCCGGGGCGGCCGACACGGCGGCAGGAAACCGGTAAGGCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCATGCGCGGGGATCCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 86245-82356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001166.1 Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================== ================== 86244 29 75.9 32 ...........GA..........G.TTCG GGGGTCTTGAGGATCTGGTCGGCGAGCCGCGG 86183 29 86.2 32 ...........GCA.............G. CTCACCCGGCCCGGCGGCGCCGCTCTCGTCGG 86122 29 89.7 32 ...........G...............GT TCGTAGAGATTTGCGGTGATGTGCCGTCTGGG 86061 29 89.7 32 ........................G.AC. CTCTCAGGTTTCGGTGTGCCGATCAATACCGG 86000 29 96.6 32 ..........................A.. GCGGGCTCGCGCTCGGGGGTGGGGGTGGACGG 85939 29 100.0 32 ............................. CTGACGGCGCCCCGTGCGGACCATGAGGAGGG 85878 29 93.1 32 ..........................G.T CGGGTCGATCTCGGACGCGTCCACGAAAGCGG 85817 29 93.1 32 ...........................CA GCTCTCGGCGTGGGCGCGGGACGCGGGGGAGG 85756 29 89.7 32 ..........................TCA GCCTCTGCCCGCCAGCCGCTGCCGAGGACCGG 85695 29 93.1 32 ..........................TC. ACGAAGCTGGACGAGTTCAGGCGCTGCCCCGG 85634 29 93.1 32 ..........................TG. TCCACCGACCACGCGAGCAGCCCCCCGGCCGG 85573 29 93.1 32 ..........................TG. TCCACCGACCACGCGAGCAGCCCCCCGGCCGG 85512 29 89.7 155 ..........................ACT TGCTGACCTGCAGTCATACCAGCGGGTCTGCCAGTATCCCTTCGGTGGCTTTCCGGTCCGGCCGCTGAGCCCAGAACAGAAACAACCGCCCGAACCCACCAGCTCTCACCCCCACACGTACACCGTATCGCCGGCCAGCCACACCGAGAGCGCGG 85328 29 69.0 33 .C......T..GA........T.G..GCT CGGTGTGCCTGCGGCCTCGCGCAAGAGTCCCGG 85266 28 75.9 32 ........-...A....T.....G.TGG. CCTGAACACGTCGGCGAGGCAGCCGAGGGAGG 85206 29 65.5 31 ...GC...T..GA..........GGGAC. AGCGGGCCGAGGGCGGAGCACACGGGGCCGG 85145 28 75.9 32 ...........GA....-.A.T.G...T. GCCAGGATGCGCGTGCTGCCGCTCTCCAGCGG C [85141] 85084 29 75.9 34 ...........GCA.........G..GGG GCGAAGCGGATTCCCGAAGTGCGCCGCACACCGG 85021 29 79.3 32 ....C......GA..........G..GC. TGGATCGCCTCGACCACCCAGTTCTCCGTCGG 84960 29 75.9 34 ...........GCCT........G..AC. TCTGGCCAGGACCACCGCGCGGACAGGACCGCGG 84897 29 79.3 32 ...........GCT.........G...GG CCTCCCGGGGTCGCCCTCACCGGCTCGGACGG 84836 29 79.3 32 ...........GCT.........G..TC. GGGCGGAGCAAGTTAGTGGCAAAGGTGACCGG 84775 29 82.8 32 ...........G.A.......A.G...G. CGTAACTGCACAGCACCACGCTCTCCACGCGA CGC [84760] 84711 29 72.4 32 ...........GCC.......A.G..GCG GCCTTGCGGCAGCGGTCCGAGCAGTACGTCGA 84650 29 75.9 32 ...........GCC.......A.G..GC. TGGAAGCGAGCCCGCTTGGACGCCAGCACCGA 84589 29 75.9 32 ...........GCC.......A.G..G.T CCCTCCACCTCGGCGGCCAGACCGTAGCCCGA 84528 29 72.4 32 ...........GCC.......A.G..GGG CGGTCAGCGTCTCGTACCCCCGCCCGGCCAGA 84467 29 79.3 32 ...........GCC.......A.G..G.. GTCCAGATCATCACGTTCAAGCGCATCTCCGA 84406 29 72.4 32 ...........GCC.......A.G..TCG TCGCAGAAGCGGATGAGGAAGTCGAGGACCGA 84345 29 79.3 33 ...........GCC.......A.G...G. GCACGTGCCAGCGTCCCCGGCCGCGCAGGAGGA 84283 29 82.8 32 ...........GCC.......A.G..... CGTTCGGCGGAACGGCGAGGCGAGCGTGTCGA 84222 29 75.9 32 ...........GCC.......A.G..TT. TGGGCGTCAGATGCCGAGGTCGAGGCCGAGGA 84161 29 79.3 32 ...........GCC.......A.G..G.. CCCGGACTGCCAGAACACGACGCCCCTCCCGA 84100 29 75.9 33 ...........GCC.......A.G...CG GGCGAGACGAGGGCTTCACCTTGATCAAGGTGA 84038 29 79.3 31 ...........GCC.......A.G...G. GGGACTCGGCGGCATGAGTGCCGCTCAGAGA T [84012] 83977 29 72.4 154 ...........GCC.......A.G..GCT TGCCGACCTGCGGTCATACCGGCTGGTCTGCCAGTTTTCCTTCAGTTGCTTTCCGGCCGGTCGCTGAGCCCAGGACAGAAATGACCGCCCGACCCCAGCAGCTCTCACTCTCCACGTCAACACCGTAACTCCCGTAATCCGCTCGGCGGCGCGA 83794 29 65.5 33 CT.......A.GA......T...G..AGG CTCAGCCAGCGCGCGCCGCCCCGAGCGGTCGGA 83732 28 75.9 28 ..-........CA.........A.C..GG CGCCCGCCAGTTCGCCTGCAGCAGCCGG A [83715] 83675 29 75.9 33 ...........GC........T.G..GGG GTACGAAACGTGATCGTCGGCCTGATCGTCGGA 83613 28 72.4 33 ..-........GT.....T..T.G...TG TTGGTCCGCCAGTAGCTCCGCTGACCGTGCGGA 83552 28 75.9 32 ..-........GCC...A........A.G TTGACCGCCGTGGTGGTCGAGCTGGTGACCGG 83492 29 79.3 31 ...........GCC...A.....G....T GACCCCACCGACGAAGAGGGCCGCGATCTGG G [83466] 83431 29 72.4 32 ........T..GCT.........G..TTG CAAAGGTTCCCCGCGCTCGAGCGGGCCCACGG 83370 29 93.1 32 ...........G...............C. AAGAGCCCTGACCGAGAGGGGAGCCCGCGAGG 83309 29 100.0 32 ............................. TCGGTGCGGACGCCGTCCGCCTGGTGCTCCGG 83248 29 89.7 32 ..........................TGG GTCGCCCGCGTCACCCTGACCGGCGAGACCGG 83187 29 96.6 32 ...........................G. CTGACCGGCCTGGACCCCGCCGTACGAAACGG 83126 29 93.1 32 ..........................GC. AGCTCGCGCGAGGCGCCAGTGCTCACTGGCGG 83065 29 89.7 32 ..T........................CG CCCGTGCCTAACCCCATCACCGGCGAGGGAGG 83004 29 89.7 32 ..........................GTG GCCGGCGCTCACGGCGTCGTGCCGATCCTCGG 82943 29 93.1 32 ...........................CG CAGGGCAACGCGTCCTCGATGCTGGGCTGGGG 82882 29 93.1 32 ..........................TG. GTGACCTGCTGCCGTGAGCCCCGGCCGGTCGG 82821 29 89.7 32 ..........................GCG CAGGGCGCGCTCGCGCAACAGCCGCTCCACGG 82760 29 89.7 32 ..........................GCG CCTGCCCGCGCGGAGTGCGCGGTGATTTTCGG 82699 29 100.0 164 ............................. TTGCTGACCTGCAGTCATACCAGCGGGTCTGCCAGTTTTCCTTCGGTGGCTTTCCGGCCGGCCGCTGAGCCCAGAACAGGAACAACAGCCTGCTCCCACCAGCTCTCATCCTCCACGTCACACCGTAACCCGCGAAAACCCCCGACAGCCGCTCAGCGGCGCGA 82506 29 65.5 32 CT.......A.GA......T...G..AGG TTCGGCCAGCGCGCGCCGCCCCGAGCGGTCGG 82445 29 69.0 32 .A.T......TGTAT........T....T CTGCCTTGCCGAGGACGAGGGCTCCGCGGCGG 82384 29 65.5 0 .A...TT....GT........T.GG..TG | ========== ====== ====== ====== ============================= ==================================================================================================================================================================== ================== 58 29 82.2 39 AGGATCCCCGCAGGCGCGGGGCCAACCAC # Left flank : CCCTGAAACCGGGAGGATCCCCGCGCATGCGGGGACGACGCCGTAGATCAGCCCGTCGGACTGGTCGGGCTCGGAGGATCCCCGCGCATGCGGGGACGACTTCCTCAGCGCATCCATGCGGTAGAAGTCGTACGGAGGATCCCCGCGCATGCGGGGACGACCTCAGGCTCGGGCGCGAGGGCCAGGGTCTCCCCGGAGGATCCCCGCGCATGCGGGGACGACACTTTCTGACCTGTGGTCATACCGGCTGGTCTGCCAGTTTTCCTTCGGTCGCTTTTCAAACGGCCGCGGAGCCCAGGACAGAAACGACCGCCCAACACCAGCCCCAGTAGCTCTCACCACCGCTCATACGAACACCGTAGCCCCGCCCAGCCACCCCCGTAACGCCACCGATCCCCCGAGCGCGGGGCTGTCCCTCCTCCCCGTCGCCGCATCCGTCTAAAGATCCCCGCGCGCGGGGCCGACGCGGAGGCGGGGCGCGCGGCGGACACGGGCCTCGG # Right flank : GGGTCTGGGCGGGGTGGCGGTGGGTCCGGCAGTGGTTCAGGGCCCGGCGATGAGCCACAGGATTAAGACCGCGTCGAGGTTCTCGGCGTAGCGGTAGACGACGCTGATACCGCGGCCGCCGGTCTGCTCGGGGAGGAGCTCGTAGGCGTAGGTCGCGCTGCGCGTTCCTCGATCGGGCAGCGGACGGGCGCTGGGCTGGTCGGGCTGCTCCTCGAGACGGCGGCGTACCATTTCGACGGCTGCTTGCTCGGAGCGGGTGAGCTCTCGGAGGGTCTTTTCGGCGGCGTCGGAGTAGAACGCCAGGCTCACCGGTCGGCCTCGCTCATCTTGCGCCGCAGTTCCGCCTCGATGTCCTGGCTGGAGCGGGAGATGGCGGTGGCCGCGTCCGCGTCGCGGTGGAGGAGGACACGGTGCCGGTATGCCTGGGTGATCTCGCGGACGTGAGTGAGGTCGTCGAGGTCGGTGGCAGCGAGTTCCCTGTCGAACTGGTCGAGGTCGCT # Questionable array : NO Score: 3.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.11, 5:0, 6:0.25, 7:-0.58, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCCCCGCAGGCGCGGGGCCAACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCAGGCGCGGGGCTCAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 86523-87829 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001166.1 Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================== ================== 86523 28 89.3 33 ....T......AT............... GGGGAGACCCTGGCCCTCGCGCCCGAGCCTGAG 86584 28 89.3 33 ....T......AT............... GTACGACTTCTACCGCATGGATGCGCTGAGGAA 86645 28 89.3 33 ....T......AT............... GAGCCCGACCAGTCCGACGGGCTGATCTACGGC 86706 28 89.3 33 ....T......AT............... CGGTTTCAGGGAGCGGGCCGGGAGTCCCGTGCC 86767 28 89.3 33 ....T......AT............... CCAGCACTAGGAGCTGACCGACTGTGCGTGATG 86828 28 85.7 33 ....T......AT...........T... AGCCGAACTTGAGGCTCTTCGAGCTCGCGGCGT 86889 28 82.1 33 ....T.......T.T.....T...T... TTCCCTGGCCTCAGCATCCGTCATGAAAAGCAC 86950 28 82.1 33 C...T.......T.T.........T... TGCCCAGAGGCCGACGCGGACCAGGAGCGGGTC 87011 28 75.0 33 ..T.C.......CCT........TT... GCGGATTAACTTCCCGCTGGCCTCGCGCGGCCC 87072 27 85.7 33 ..-T........T...........T... GACGGGCGTGCAGGCCGGTCTGGAGCACATGCA 87132 27 85.7 216 ..T..-......G...........T... GGCCGCTCGGGGCGGCGCGCGCCGGCCGAACTTGTCGGTCCTGCGCTGGTGGGGATCAGTCGCGCCGCCGGGCGGCTGTCGAGGGTTACGGTGTTGACGTGGAAAGTGAGGGCTGGCGGGGGCGGTCTGTTGTTTCTGATCTGGGCTTAGCGACCGGCCGGAAAGCAACTGCTGGAAAACTGGCAGACCCGCTGGTATGACTGCAGGTCAGCAAGT 87375 28 100.0 33 ............................ AGCTCGTCGGCGAGCTTCGCGTGCGCGGCCTCG 87436 28 100.0 33 ............................ GATGTGCGCTGGATGCAGCGTGCGATCGGCCTT 87497 28 100.0 33 ............................ GGCGGGCTGGTACTTCCGGCCCGTAGACCGGAT 87558 28 100.0 33 ............................ GGGAACCTGCTACGCCGACCGCGAGTTCGACGG 87619 28 96.4 33 .......................G.... CTCCGGGGCGACGGGCCGGGCGTGACGAACGAG 87680 28 89.3 33 ............CA.........T.... GGTTGTCGAACATCGAGCCGTACGGGCTCGTCT 87741 28 92.9 33 ....T.......T............... GGGCTACGCGCTCCTCTTCGACCAGGACTTGGG 87802 28 89.3 0 .......T....T..............T | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================== ================== 19 28 90.0 43 GTCGGCCCCGCGAGCGCGGGGATCCTCC # Left flank : AACCTGAGAGGGTGCTGGCCCCGCGCCTGCGGGGATCCTCCCAGACGGCACATCACCGCAAATCTCTACGAACGGTTGGCCCCGCGCCCGCGGGGATCCTCCGACGAGAGCGGCGCCGCCGGGCCGGGTGAGGCGGTTGGCCCCGCGTGCGCGGGGATCCTCCGCGGCTCGCCGACCAGATCCTCAAGACCCCCGAATCGGCCCCGCGCTCGCGGGGATCCTCCGAGGCCCGTGTCCGCCGCGCGCCCCGCCTCCGCGTCGGCCCCGCGCGCGGGGATCTTTAGACGGATGCGGCGACGGGGAGGAGGGACAGCCCCGCGCTCGGGGGATCGGTGGCGTTACGGGGGTGGCTGGGCGGGGCTACGGTGTTCGTATGAGCGGTGGTGAGAGCTACTGGGGCTGGTGTTGGGCGGTCGTTTCTGTCCTGGGCTCCGCGGCCGTTTGAAAAGCGACCGAAGGAAAACTGGCAGACCAGCCGGTATGACCACAGGTCAGAAAGT # Right flank : TGCTGCTGGTGGGTGACGGCACGTGTATACACGTGGACCCCGCGCTCGGGGAGCGGTCACTCGGCCTGTTCCACGCATCACCGTGTCGCCTTACGGGATCGCACGACGCGGGGCCCGGTCCGCGCGGGCCCGGCGACGTGCGGCCGCCTCGATCTCGGCACCGGTGCGCCGCTCCGCGTCGACGTCCTCGCGCGCCGAGAGACGGGGCACTTCGTCGGGGAAGGCGTGGTGGGACAGGGCGCGCATCGCGGCCGCCTGGCGCTCGCCGGCGCGGCGGTCGGCCTTGAGGACGTCGTGGTCGACGCGCTGGGCGGGGGCTGCCTGCTGGTGGGCGCGGAGCGCAGGGCGGTATCCGGGCGAGGCGTTCTCCCGGGTCCGTACGGGCGTGGGTGCGGCGGTGCCTTCGCCGTCGGCAGTGGCCGGGGCCGGGGTGGGCGCGGGGCCGGTGCTGGGGGCGAGGACCCGTACGGCCCGGACCACGGTGCGCCCCGCCGCCGTGT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGAGCGCGGGGATCCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGAGCGCGGGGATCCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //