Array 1 32-1803 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARW01000022.1 Chromobacterium haemolyticum strain NRRL B-11053 Scaffold_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32 28 100.0 33 ............................ ACGACGAGGCCATGAAGCACATCCCGGAAGCAC 93 28 100.0 32 ............................ TGAGCGAAGAGTGCCAGCACTGCTTGAGTGCG 153 28 100.0 32 ............................ TGAGCCAACGCCGGGGACGAGCTGCACCCGTA 213 28 100.0 32 ............................ TTCCAGGTACAGAGGATTTGGCTTGATGCTGT G [226] 274 28 100.0 32 ............................ ATGTCGGCGCGAGTCACCGCGGCGAGGTCTAC 334 28 100.0 32 ............................ ATCGGGCCGCAGCTGCACTTCGAAGCGAAACC 394 28 100.0 32 ............................ TCTCCCGCTTCGGTTTCTTCTCCCTTGCCATC 454 28 100.0 32 ............................ ATCGGTGCAGCAGCGGTTGACCTCCAATGTCC 514 28 100.0 32 ............................ TGGGGATCAATGGCCGAGGCTTCGCGCCCGGC 574 28 100.0 32 ............................ GATCGCTGCAACATTGACTACAGCATCGACAA 634 28 100.0 32 ............................ TGGTGAGCTCGTGCCTGGCCAGCCAAGCCTGC 694 28 100.0 32 ............................ ACTGGTCGAACGGCCGTTGATGACCCCGGATG 754 28 100.0 32 ............................ GCGAGCTGGCCGATCGACTGATTCTCGAAATC 814 28 100.0 32 ............................ ACCTATCCGGCGCAAGGCACCCAGGAGATCAG 874 28 100.0 32 ............................ TCGGCGTCGACGGGCTGTTCGTCGACGAGGCG 934 28 100.0 32 ............................ ATTCACATGCCGCGCTGGGCCTGCCGCATCTT 994 28 100.0 32 ............................ ACAGGCAAGCGCGTTTCGGCATGCTGCTGAAC 1054 28 100.0 32 ............................ TTGCCGCCGCTGACGCTGACAACGTGAATGAC 1114 28 100.0 32 ............................ AGCCAGTCGCCGAACCGCTCGCACGGCAGGAT 1174 28 100.0 32 ............................ AACTTGAGCGTGGCCGTCGAGTCCTTGCCGCC 1234 28 100.0 32 ............................ AGCGCCGCATCGGCAATTTGCAAGCGGTGCAA 1294 28 100.0 32 ............................ AGTCCAAGCAAAATGGTCGCAGCCAATACACT 1354 28 100.0 33 ............................ AGCAGGTTGCGCTGGACCCATTCGGAGAACTCA 1415 28 100.0 32 ............................ TTACCCAGCGCATATGATGATGCTTTTGATGG 1475 28 100.0 32 ............................ GAGAAGCGAAGACAAAGCCGGTGCGACAGACA 1535 28 100.0 32 ............................ ACAAATATAGCCCCTTCGCTACGGAGGAGCAG 1595 28 100.0 33 ............................ GATGCCAGTCGCTACGCTTTCAAGCGCAATCTT 1656 28 100.0 32 ............................ AGGTGATAGGGCCCAGCACCGGAAGGTAACCT 1716 28 100.0 32 ............................ GTTCTGCGTGTTGATGCCGGCGCTTGCCGGCA 1776 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTGACCAGGTGCGTGACGAAGTCGTCGACCAG # Right flank : GCTGACCAGGTGCGTGACGAAGTCGTCGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1299114-1298485 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARW01000002.1 Chromobacterium haemolyticum strain NRRL B-11053 Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1299113 28 100.0 32 ............................ TTGCCCCATTGAGATCAACGCAAGTGTGATCC 1299053 28 100.0 32 ............................ ATAGTGGTACAAGAGACGGGTATTACCTAGTC 1298993 28 100.0 32 ............................ CAAGTCGAGTGTCGCTCCGGTGGCGTAACCAG 1298933 28 100.0 32 ............................ TGACGATTGATGACATCGTGTCTAGCGCGACG 1298873 28 100.0 33 ............................ TTGAGGAATAGGAGCCGAAACGGATGATGGAGA 1298812 28 100.0 32 ............................ TGTAAGGGATTGCGCGTTAGAGGCGCGGGCGA 1298752 28 100.0 32 ............................ GCGCTCAACGATGAAGCCGTGCGGCCGATTTG 1298692 28 100.0 32 ............................ AGGGGTATAGCCATCGATCCAGCCGTCGTACA 1298632 28 100.0 32 ............................ TGATCGACGCGGCGCGCGCCGTCATCGCAGCC 1298572 28 100.0 32 ............................ TTCAAGCCGAGGAAGCTGATACCGTTGCCGGA 1298512 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAGCTCATTGGCACTGAACAAGGGCGTGCCGCCCCCGCCGCAAAACCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAAGTGCCGGTGCCCAGCAGGATGCAGCTGGTGTTGGCGATGGGGATATTCCAATACAACGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACCCGGCAGTGCTGCAGGTAATAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGACGATACCTTCGGGATGGAACTCGATGGCATATTTTGCCATGGGCATGAACGGCATGGCAGCCTGCGCGACAAACCCTTTTTTTCCGCCCCCTGTGGCTGACATTTAAAAACAATGACTTAGCGATGGCATGGAAATTTGGGTCAAAGCCGGAAGAATCGCTGCAAATGCCCACGCCATAAGGACTGTGGGCGGTGTAGACTCTA # Right flank : GCTGACCAGGTGCGTGACGAAGTCGTCGACCTTCTTCGATGGCTTTCTGCCATCTGCCCTGCATTTACACCACTTCCGTGGACTCTATCCGTAAGCTTAGGGCTGTTGAAAAAGCGCAGAAAAGTGCAGTAAGAGTTAGGGAGCTACCCGATGGCAGAATTCGATACTATGAAAAAGAAGCCTTAGCATCAACTCCAGGCCCAACCCGTGGACGTTCTCATGTAACAGAGCTGAACACTCGGACGGGACAAGTACGATCATGGGAAGAAACTTACAATCACTCTGGACAAGTAAACCGCGTTCACCCCAAGATGGTGGATGGTGAAATTCTCAGCTTGCCACATTACCCACCCACAAAAAAAGATATAGATCAGGGCCTAGCTACATCTGATGGGCGAGCAATTAAATGCAATAACAAGTAAGGACCAACGTGCAAGATTTACGTAAATTATTTTTATCAGGAATAAAATTAATAACTGATAACAATGGATACTCAGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4336296-4336863 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARW01000002.1 Chromobacterium haemolyticum strain NRRL B-11053 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4336296 28 100.0 32 ............................ AAGTTCTGACCAATCGCCGTGAGCGTGTACAC 4336356 28 100.0 32 ............................ GCTACGCCAAGCAGATAGAGCGCATCGGCCCG 4336416 28 100.0 32 ............................ TTCAGCGAGAAAGTCACCGACCTGCCCACCCT 4336476 28 100.0 32 ............................ ATGCGCGTGGACCCCAACAAGCTCGCGCATCA 4336536 28 100.0 32 ............................ AATTCTCGTGATGTAACAACAAATGGGCACGC 4336596 28 100.0 32 ............................ AGGCTGATGCGGGTGCGCACGGCTTTGCCAGA 4336656 28 100.0 32 ............................ TTGTGATATCGGAAGCCAGGACGGAAGACGTG 4336716 28 100.0 32 ............................ AGCCGCAGCTGGAACTGAACGGTGTCGCTGTC 4336776 28 100.0 32 ............................ TATTTCAAGAACGGCGGCGCAGTTTTCGAGAA 4336836 28 92.9 0 ......................G....C | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GATTGGCTGCAGCAGCATCGCGTGTCGGTGTTGAACCAGACCCCGGCCGCTTTCCGCCAGTTGATCCCCGCCGCCGCCGCTCACGCCTTGCCGGACTTGCGTCTGGTGATCTTCGGCGGCGAGGCGCTGGAGCTGGCCAGTCTGGAGCCCTGGTTCCAACAACGCGGCGATCAACGTCCCGAGCTGGTCAATATGTACGGCATCACCGAAACCACCGTGCACGTCACCCAGCGCGCCATCCGACAGGCCGATCTCGACGCTCGCCGGGGTCAGGTCATCGGCCCGCCGATTCCCGATCTGGCCTTCCATCTGCTGGACCGCTTCCTGCAGCCGGTGCCCGTCGGCGTGCCCGGCGAGATCTACGTCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACCAGGTGCGTGACGAAGTCGTCGACCA # Right flank : CACCAAAGCGAGGCAATTCAACTCGCTATGCACACCCAATGTTCTGAAAGCGAGCGCAGCAAGAATCGGGTCGCCCACAGGGTCGCGCCGCCATAGACTTCGGACATTTCAATAATGCGAAGGAGAACGGCATGGCTTGGCAACTGGAAACCCTGGACCCGGCTTTCGTCGAACGGGCACGACACAAAGGGATTGATGCGCTTGGCCAAGCCGTGCGGCGGATGACGGCCGCCGGCGGCGAACCTTTCCGCGACGCGCTGCGTCGCGCCATCCCGGGCGAAGAGCTGATCCTGGCGAGCTACAGCCCATTCCACCAAGTCGGGCCATACCGCGAATATGGGCCGGTTTTCCTGGCGGCAGGGCCACAGCCAGAGCCCCCGCCCGAACTATCATCACTACTGCGCCGCGTCGGCAGCAATCCCTACCTCGGCGACCGCATGGCGCTGCGCGCTTACGACAAGGAACAGACCATGCTGGAAGCCGTGCTGCTGCCAACGCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4347073-4348351 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARW01000002.1 Chromobacterium haemolyticum strain NRRL B-11053 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4347073 28 100.0 32 ............................ TAATGGGACGGCGGGAGCGGTTTACGGGCAAA 4347133 28 100.0 33 ............................ ACAGGAGTACGAAGTGCCACACACACGCCCAGG 4347194 28 100.0 32 ............................ GTCTCCGGCCTTCACATCACGCGCAACTATCA 4347254 28 100.0 32 ............................ GTGCTGCGGGAGTGCGACGAAGCCATGGCGTA 4347314 28 100.0 32 ............................ TTGCCGGTCATCGTAATGATGCGAATAGCCTC 4347374 28 100.0 32 ............................ TAGGCAAGTATCCTCAGCGAGTAGGATTAAGC 4347434 28 100.0 32 ............................ GAAAAGCCCCAGCGCATCGACCACGGTCATTA 4347494 28 100.0 32 ............................ GGCACTGGCGGCACGCCGATTACTTGTCAGCA 4347554 28 100.0 32 ............................ AGGACTGCGCGAACCATGGCGCCGGTGTACAA 4347614 28 100.0 32 ............................ ACCAGTTCGGGCCGTTCCGTGACTTCCAGCTC 4347674 28 96.4 32 .................T.......... TGGTCAGTACGCTGGGGCTTTTCGCTGGGAGT 4347734 28 96.4 32 .................T.......... ATTCCGGAAACCCCGCATGGAGAACTGCATGG 4347794 28 92.9 32 .................T.A........ GAAATGGACTGGGCCGAGAACTGCGAAGAGCT 4347854 28 96.4 32 .................T.......... ACAGCCTGCTCCACATTGCTGCATTTGACTAT 4347914 28 96.4 32 .................T.......... TTAACAGACAAGTATCACCGCCATCCGGCAGA 4347974 28 96.4 32 .................T.......... GCTAACGAGATGATGGAGCACGACAGCTACGA 4348034 28 100.0 32 ............................ ATTGATATCGAAGCGCGGCGCCGCGACGGCCC 4348094 28 96.4 32 ..............A............. GTACAGATAGCAGCCGTCAAAGTTCTTGTACC 4348154 28 96.4 20 ..............A............. TGCCGCTGCGGCTGCTTCAG Deletion [4348202] 4348202 28 96.4 32 ..............A............. AGGCGGGCGGCTGATTGATCGGAGCGCCGGGA 4348262 28 100.0 32 ............................ TCTCAAGAGGTGAGTGGGGCCTGCCGGCTCTA 4348322 28 78.6 0 ....A........CA..T.....CC... | C,C [4348344,4348349] ========== ====== ====== ====== ============================ ================================= ================== 22 28 97.4 32 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAGGCCTGGCAGGTACGGCGCAAGCAGGCCAAGACCAACCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAGGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTGACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGCTGCACATCGAACAGCGCCCGGCCCCGGCCACCCGCAGCGGTCGCTTCAACACCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTGACCCTTTTTTCCAAGCCCCGCCGCCAAGCCTATTAAATCAAGGGCTTGGCGCGGGGTGCGAGAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGGCGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : ACAAAATCAATGCTATATTAGGCATCTAAATTGACTTTGACTAGGGAGAAATTATGGACTTGGTACTTGCCGATGTGGCCGTCAGCGTCACCGAGCTCAAGCGCAATTTTGCCGGCATCATGCGCGAGGCCGCAGGGCATCCGGTGGTGATCCTGAATCACAACCGCCCAGAGGCCTATCTTGTCCCTGCCGCCCAGTACGAACGCATGATGAGCCTGCTTGAAGACATTGAGGACACAAAGCTGGTGCTGGAACGTCGGCAGCAGCCCACTGTCAAGGTGGACCTGGATGAGCTATGAAATTGTCTTCCGGGTGGATGCGGAGAAGGAATGGCGAAAGTTGGACCCATCAATCCGACAGCAGTTTGCCAAGAAACTGAGAGAACGAGCCGAGCATCCGCACAACCCTGCCGCCAAGCTGCATGGCCTGGAAGGCTGCTACAAGATCAAGCTGCGTCAGACCGGATACCGGCTGGTTTATGAGGTGGACGACGGCAAAAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : GTTCTCTGCCGGATGGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //