Array 1 11269-9852 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000144.1 Pseudanabaena biceps PCC 7429 scaffold_00144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 11268 37 100.0 34 ..................................... CAAGACTTGATCGGTTTGGGGCGAATCTACCTGG 11197 37 100.0 34 ..................................... AGATCGTGGCATTGATGACACCGCAATACTCGCT 11126 37 100.0 38 ..................................... TTGCCATCGGCATAAAAGAATCTAACCTTACAAAAGAA 11051 37 100.0 37 ..................................... CTAGTGGAAGAATCCAAACCCGTTCTAGTGGAAGTAG 10977 37 100.0 36 ..................................... ATTTCCGAATGGCTAACACAGCAAGCATCAGTGGGC 10904 37 100.0 34 ..................................... CGTTTATTTGGCGAATACGCAGATTGGGATGAAC 10833 37 100.0 34 ..................................... GTAGTCGGCGTAGCGGCGGAATGTTATGTGGAAT 10762 37 100.0 35 ..................................... GGATTTGCGACTGATGAAACAATACTAATGGAAGA 10690 37 100.0 35 ..................................... ATTTTATGCGATCGCCATTGGACACCAGGCGACGC 10618 37 100.0 35 ..................................... AAAAATTCATCGGGGAAATTAGTAATTCCTCAATC 10546 37 100.0 34 ..................................... GGCTGCTCAGCATCCACAGATACATCAATGATGC 10475 37 100.0 35 ..................................... TATTCACACTATAGCGATGAACCTACAAAGAAGAT 10403 37 100.0 39 ..................................... GGGATTTATAATAATCCAACTTGGATTTAAAGTCTGATG 10327 37 100.0 36 ..................................... TCTCTCTCTAGAGTGCATGGAATAGCATCAGGATCG 10254 37 100.0 37 ..................................... CTCTCTAACACCTACCGAAAAAGAAATAATCGATGAA 10180 37 100.0 34 ..................................... GGCAAGGTGTATAAGGATATGACTGAGCAGCAAG 10109 37 100.0 33 ..................................... TTGAATAACAAGGTCATTACCCTTTACCACAGG 10039 37 100.0 37 ..................................... TCAAAGATCGCCACTAAACAAAATCAATAGGTGGGCG 9965 37 100.0 40 ..................................... TAGTTCCTTGTCGGTCATCAGTTTGACCGTTCGGGCAAAG 9888 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 100.0 36 GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Left flank : GGTTTGTTGCCTTCAACCAAATTCGGTTGATGCACAAAACTCCTGTCTTTTAGCGTTTTGGCATGGGGTCTTCCCCACCCTGTATGGTCTCCTGCTAGCAAGGGGCGAATGTCTTTGGGTATTTGTTCTACACATAGTCGTCTAAGCCTTCCTCGTCTCGGACGACTATCTTTTAGTGATTCATACAGGCTTGACCATTTCCGCCGATACACCGCAGATAACGATAATTCTGCAAATGATTTCACGCTTGGACTGGTTAACACTGCATCCATTAAGTCAAATATTGCATCTCTTCCATTTCCTAAAAAATTAATATGCCTGTTGACGAAAGTTCTGTAGTTTATCAATAATCATGACTGTAGATGTGCTTTTTCTTTTTCTATCTACTTTAGGCAGTTTGTATCTCTTTTACTCTGCCTTTTTTCCTTTTTTAGTCTAAACTCCAGCCTTTTAGGGATTGAAACATCCGAATCCGCAGAAAGCGATCGCTCAGATCAGGA # Right flank : TGTGGTAGTCCTAAAAAGGAAAGGACGCACACGGAGGTAAAGAAGTGTTGTAATGATGAATAAAATTCCAAATGGCACCAATGTGATTTTCCAACTTCTTAGAAAAGGATAAGGTCTTTCTAACTAGTCTAGATACTCGTTGACGTAACGTACAGTTGAATCGCTCAATATAGTTGGTCTTTCCCGTTCTTTACCGACTGCCCTATGACGTTTGCTGGGAAGGACAACTGGATAAGACGAGTAGAAATCAGTGTAAATAATCGCACATTGTCGATAGACACTAGGCAACGATTCCCATAACTTTTGAGCTGAGTCCCCAGAGCGATCGCCAATATAACAACCGACAATTTCACGAGTCTCGGCATCAATGGCAAGCCATACCCACTGTTTATTGCCTTTGTCGTCCACAAAAGACCATAATTCATCCATCTGTACGATCAAACGGCGTTTTGGTTTTGGTTCTACCTCCACCTGCTGAGGAACGTTTTCATATTTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 853-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000149.1 Pseudanabaena biceps PCC 7429 scaffold_00149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 852 35 100.0 33 ................................... AGTTGGGGTACGGACTGTCAGAGGAAGAGAAAA 784 35 100.0 35 ................................... TCTGATGATGTTCATACGGTCACCTTTGGGGGCGT 714 35 100.0 33 ................................... CCATGTTCAGTTGCAGCTTGGGGAACTTGTTTG 646 35 100.0 34 ................................... TTTGAGGCAATTTTGTTGACCAACGGATACACCA 577 35 100.0 37 ................................... AATCTTTACCAAGTTGTCTTCGGAAACGGGAATTATG 505 35 100.0 33 ................................... CAATTTGGATTACCCCTTAAACAAGGTAAGTTT 437 35 100.0 37 ................................... TAGAAGCCATTGGCACAACTAAACATAACAAGTTAAT 365 35 100.0 36 ................................... TCGGAACTTATTTCTGAGTTTAGAAAACTTGGACTG 294 35 100.0 34 ................................... GCATCTGTACTGAAAAGAACAGCGGCGACTGGAA 225 35 100.0 34 ................................... ACAGCAAGTTGCAGATGCAATCGCTTTAGCAACT 156 35 100.0 37 ................................... TCTTCAGACTGCTCCAACTGAAGCAATGAAGATCAAT 84 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 12 35 100.0 35 GTTTCCGTCCCCTTGCGGGGTAAAAAAATTGAAAC # Left flank : CTAAAGGCATTTTTATTTCTAAAACTCCGTGATAATAAGCTAAATGAATCGAGCGTTGGCTACCCATGTCCGTGAGCATGGCTTGATAGGTTTGCCAACTAATATTTGGTAGTACAGCGTTATTAGCTGGGCTAATTTCTAGGTTAGATATTGTTGCTGTAATAGGCATGATTGTTTACTACTGTTCATTAAAATTTAGAAAAATCTAAGAAGTGCTACATATATAACTTGTAACACAAAATAGATCTTCGGCATTGGTTAGCTAAGCGGGGATAGATGCTGAATTTTTTATTTCTTCGTCTTCTCTTCCCTCTTCGATCTTCCGCCTTTCCCTTACGTTTCCGTCCCCTTGCGGGGTAATGGGCGTAAAAGGTAAGAGGAAAGGCGGAAGAATGAAGATCGAAGCAAGACAAGGAAAATAATTTCATCCAAGCATAATAGCCTTCTCGATTTCGTCTTTTCTTCATTCTTCGATCTTCATTCTTTTCTCTTTCTCTCCC # Right flank : CTAGTGTACAAGTTGACACTACAAAAATTTCAATTGTTTCCGTCCCCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGTAAAAAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 12905-11036 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000149.1 Pseudanabaena biceps PCC 7429 scaffold_00149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 12904 35 100.0 33 ................................... CTTTCATATTACAGCCTACAAAAAGAACTGTAC 12836 35 97.1 37 ...................A............... TTTTAGATTCCTATAATGGTTAAATTTCAAAAGTAAA 12764 35 100.0 36 ................................... TATTGAGCTTTTTACAATTCAAAACTGCAAAATTAA 12693 35 100.0 33 ................................... TAAAAAACAAGCAAGCAACCAGCAACAGGTTAC 12625 35 100.0 38 ................................... ACTTCGACGATCGCTATCAAGAACACTCTGCCACCTGG 12552 35 100.0 37 ................................... CTTTTTCTTTGTTGTTTCAGTTTCTTACTTGTTTTTT 12480 35 100.0 33 ................................... ACTTGGGGTACTAACTTTAGTGCTGGGCTTACT 12412 35 100.0 35 ................................... CTGAACAACATTCAGCTTCGTACTAGTGGTGCCTA 12342 35 100.0 33 ................................... CGTTGTCCAAGCAGACGTTGCTGCAATATCTGT 12274 35 100.0 32 ................................... TTTTGGTCAATGGTGCCTCAATAACTGGAACT 12207 35 100.0 37 ................................... GATATGGGACAAGCAGGATTAATTGGAAACACTATAG 12135 35 100.0 37 ................................... CTTGCCTTCTTGCTATTTCTATCACTTTGATTTCGTT 12063 35 100.0 34 ................................... TTTTAGGTACTTTATCCTTGGTAAAGCCTGAAAT 11994 35 100.0 35 ................................... TCAAAAAAAGAAGTATAGGATCAAAATGTATTAAG 11924 35 100.0 39 ................................... CTTGGTGGTGACTGGAAGCTACCAAAGCTAATTGTTTTC 11850 35 100.0 37 ................................... ACGTTGTGTTACCTAAACTTAACACTCTCACGTTCCT 11778 35 100.0 42 ................................... GAAAGCCTTAGAAAGGTTGTAAAATCATCGCTCGACTATCGA 11701 35 100.0 37 ................................... CATTAGGAGCACTTGTTGGTATTGGTATCCAATTTGG 11629 35 100.0 35 ................................... CGCCACTGGCTTCGGAAACGAAAGTGGAACAGTTT 11559 35 100.0 35 ................................... TATATGCTTGACTATTTGGTTTGGTAATTCAGCTA 11489 35 100.0 38 ................................... ACTACGATTGCTGGAGAACAAATCCAGCCAGCGGGATT 11416 35 100.0 33 ................................... CTTACTTGTTTCGATCATTGCACTCTCGGGTTG 11348 35 100.0 31 ................................... TAGCTGGTCGACCAGACGCGAATGCCGTTAA 11282 35 100.0 33 ................................... TCTGCAATCAGCTCAAACATATCCAATTTGCAT 11214 35 100.0 34 ................................... TACAGACTGCACCGACTGAAGCTCAGAAGGTAAA 11145 35 100.0 40 ................................... AATTACAACCTGTTGGTGTATTCATTGCATTACTAGCAGC 11070 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 27 35 99.9 36 GTTTCCGTCCCCTTGCGGGGTAAAAAAATTGAAAC # Left flank : ATATTTACTCAGTGCCTAATTGAGATGCTCCCGATCGAATAGGAGTGACAATATATCAATTTTTTGATTATTTAGTCCCAACAATTGCTTAACTCGTTTTATGGGTTCTAATTCGCTGATAGTTTGATATTCATTGGGCAATTTGTCCCCAAGTAGAGTAGCGATCGCTCGTTGATGTATTTGTAATGCAATTTGGTAAATATCGTTCTCAGGCAATCCAAAGTCCATAATCGGCAATTTGTCTAAAATTTCCAGTAGTATAACAGGATATAAGGAAAGGGGGCTTTCCAAGGTTTGGGTTGTTACAACTTGTTGTAATCATGGGAGGGGTTGATTTAAAGACGGACGAGGGAAGACAGACGAGGAAATTAAAAAAGGAAGAATGAAGAACGAAACTTAATCCTTTAATTATGTTTGATCCCAAAAGCTTTACATTTTTCTTTTTTGTTTCTTCATCTTTTCTTCTCTCTTCGATCTTCATTCTTCCGTCTTTTCTAAGA # Right flank : CCTCGGCTTCTGGAGGGCTTGCCTAGAGAGCGTTTGACAACACGAAAATTCTTGGGGGTAAGAAAATTGTCAAATTATTGAGAATAGCTTTCAATAAGGCTCCTTCAAAACAGGCTCAAACCCTTACTGGGAGAGCGAGTTCTTGGGGTTGACGAAGTTATGCGGTTTTCAAGGTACTGGCTGACCCCTAGAACTGATCAGCGTTGACGCTAGTGTAAATTATCTAAAACCATACGTCAATGCCTTGGATTTTGGGGTTTATAGGGCAGCCCACGATCCTTAGTCAAGTCAGGCAAAGATATCTTCATCCCCTGAGTGCTTTCATTTGCTACAAACCATTCAAACGACTCACCCTTAGCCTCTTGCAGACGAGGATAATGTATAGGCTTATTGTCATCAAACCCTTTCGCAGCTTGGCAAAATGCTTTGATGAACTTAACATTTTGAAACTTTTCCCTGTAAACCTGACCCACCTCATCTTGAAAAACCTGAATAGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGTAAAAAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 1 48-1329 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000016.1 Pseudanabaena biceps PCC 7429 scaffold_00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 48 35 100.0 35 ................................... CATTACACCAGAATCGGCGCGTGAGATTGTTGAAG 118 35 100.0 34 ................................... TAGTGTACAAGTTGACACTACAAAAATTTCAATT 187 35 100.0 37 ................................... ACAAGAAGCCGCATAAAACCTTGTGCGTTTCATGACA 259 35 100.0 33 ................................... GAGTATTTTGGGATTGCGGAAAATTTGGTTCAG 327 35 100.0 36 ................................... CTTCGTTCTGAAAATGCAGTCCGTAACCACGAATTG 398 35 100.0 36 ................................... AAGATGCAAAAGGATCATTTTTGGTGATTAACGAAA 469 35 100.0 34 ................................... TTTTTTTGTTGGACCTGCACACAGCGTACAACCT 538 35 100.0 34 ................................... CAAGCGACAAACCGTCTTTTGCTTCAAAACTCAT 607 35 100.0 32 ................................... TTCTTAGAAAGGCGGTAATTTACCGCAGTAAG 674 35 100.0 36 ................................... CAATCTGTTAATGCCCAAACTGCTCCTATCACTGTT 745 35 100.0 33 ................................... AATTAGCTCTATCTAAATAGAGTCTTCCGTTGT 813 35 100.0 33 ................................... TAGTGAAACTGGACTGGACCAAGTAGAATGCAA 881 35 100.0 34 ................................... CTTGTAACGAAACTGATCCTGATCAGATTTGGTT 950 35 100.0 35 ................................... ACTTTCCAAGTCAATGCTTCCCTCTGCGATCGCTT 1020 35 100.0 35 ................................... AATTCAAAGATTTGGAGTACTTTTCAATAAAGATA 1090 35 100.0 34 ................................... TATTGCTGTTGATAATGCATGTGTTAGTGTTGGG 1159 35 100.0 33 ................................... ATGGATTCATAGAGTAATTCGACTTGGTTCATT 1227 35 100.0 33 ................................... CGATGAAGAAATGTGCGACTCTCAACGCATGTT 1295 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 19 35 100.0 34 GTTTCCGTCCCCTTGCGGGGTAAAAAAATTGAAAC # Left flank : AAAATTGAAACCTTCGTTCTGAAAATGCAGTCCGTAACCACGAATTGG # Right flank : CCCTCGGCTTCTGGAGGGCTTGCCTAGAGCGCATTTGACAACACGAAAATTCTTGGGGGTAAGAAAATTGTCAAATTATTGAGAATAGCTTTCAATAAGGCTCTTTCAAAACAGGCTCAAACCCTTACTGGGAGAGCGAGTTCTTGGGGTTGACGAAGTTATGCGGTTTTCAAGGTACTGGCTGACCCCTAGAACTGGTCAGCGATGACGCTAGTGTAAATTATCTGAAACCATCCGTCAATAGGTTGATATAGCTACAGCTAACTGCATTAGAACAAATCAAAACCCAAGAGAGAGTTGGGGCGCGAAGCGCCCCAACTCTCTCTTGGATTTTATATCTTAACGCAAAGCCTCGACCGAAACCGCCACAAACAACCAAGCCAATAAAAAAGCTGAAATCGGCAAAATTGACTGCTGGACGATCGCACCGATGAAGCCCGCAATATCCACACCACCCAAGCTCACCGAAAACATATAGGCAAACAGCAAACCCACCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGTAAAAAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 11631-10622 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000016.1 Pseudanabaena biceps PCC 7429 scaffold_00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 11630 35 100.0 41 ................................... AGAACTCATCTACTTTTTGGTCCTGTCCATTCTTCAGTGTA 11554 35 100.0 40 ................................... TTCACCTACTTTGTTTAAATGATCCATAGCCAAGTACAGT 11479 35 100.0 42 ................................... AAATTTGGAGTGATAAATAGCAATGCAATAATTAACCAGCTA 11402 35 100.0 40 ................................... AATAAGTAATTGCAAAACATTGACAGTACAATAAACAAGT 11327 35 100.0 39 ................................... GAAAAAACAAACGTTTCTGCGGCGGCTTCACCAATAATC 11253 35 100.0 39 ................................... GAACTGAATGCACTAGCATTGGCACTTGTGTTCGCGCCA 11179 35 100.0 37 ................................... TTTTCAACGATAAAGTATGTCAATTTAACTTGTCCTA 11107 35 100.0 41 ................................... TTCAGGAGATAGTGTAAATGCTGTATTGGGTTATCCATTTT 11031 35 100.0 40 ................................... TGTAATTGTAACAGCATCGTCTTTTTCGTCAGCAAAATAG 10956 35 100.0 44 ................................... AATAATTTGTACACCAACCTCAGTCATAAGGTTCAGTTTCCTTT 10877 35 100.0 35 ................................... TGCTAAAGCCTCGCTTTCCCTAGTTACCTCGTCAT 10807 35 100.0 41 ................................... CTCGATCTTTGAGAATCTCGATCAAGTCTTCAATCTCTCCG 10731 35 100.0 40 ................................... CTATTGCCAACGGGACGAACGATTAGCTGGTCAACAGAAA 10656 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 14 35 100.0 40 GTTTCACACCCATTACCCCGCAAGGGGACGGAAAC # Left flank : CGATATTGCTGATGATAAGCGTCGCCTCAAGTTATCAAATTTTCTTGAGGGGCATGGGCGGCGTGTGCAAGAAAGTGTGTTTGAGTGTTTTGTGAGTCTTGAGGAGATGAAAAAACTCCACAAAAAAATCGAAAAACGAGTTAAGCCCCAAGAGGATAATGTGCGGTTATACTGGATACCGTCGGATGCGTTGCCCAAAGCTCTGACTGTTGGCAGCAATCCGCCAGCACCGCCACCCAGTTTTTACATAATTTAATGTTATAAAACTAGACAAAACCTTGGTTTAGCCGTTATAGTTTTCGCAGTCACCTCCATAGGTGGCAAGAACCTTGAAAACCGCATTATTACGTTTACCTCTGGAGGTCGCGCTCTCCATAAGGGTTTCTGCTTTTATATTTGTCGTCTTGTTGCAAATTTGGCAAGCTTTTTGACTATATAAATGACCTATGGAGATCGACCCTATTAAAAGCTTTACTGTGTAAGCCTCAAAAATACGAGGA # Right flank : GGGAGAAAAAGGTCGAAGAAAGAAGATCGAAGAATGAAGAAATAAAGAAAAAATCGAAGATTTTCTGCAATAATATAGAACTAAATTCCTAATTTTTTCATTCTTCGATCTTCCCTCTTCCGCCTTTAAATTTCCCTCTTCCGTCTTTCTAATTATGTTTGACCTACGCGATCGCACTAAAAGCTTTGCACTAAGAATCGTGAAATTATATACATCTCTACCCAAAACTACCGAAGCCCAAGTATTAGGCAAACAAGTACTGAGAAGCGGAACATCAGTTGGGGCGCATTACCGAGAGGCAACCCGTGCGCGATCGAATGCCGAATACATTAGTAAAATTGAAGTTGGACTTCAGGAACTAGAAGAAAGTATTTACTGGCTAGAGCTATTAGCTGAAGCTGAGATTATCAAAGCATCTAACTTAACTAACCTCATTCAAGAAGCCGAAGAACTGATCGCGATATTTGTGACTTTGGTGAAAAAGGCAAAAGGTAAAGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACACCCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 17149-14934 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000016.1 Pseudanabaena biceps PCC 7429 scaffold_00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 17148 35 100.0 43 ................................... TTTTGATATGACTCCGTCTCTATGGCACTGATCTCAGCCTGAT 17070 35 100.0 42 ................................... CCAAATAATGCGAAAAACGTTGAAGTGTCAGTATTAGTATTA 16993 35 100.0 43 ................................... GTTCAATAAGAACTTCAGTCTGCTCAAAATTGTTTTCGTTTAG 16915 35 100.0 41 ................................... ACTGATAACATCTACTTGTTTGCCCTGTTGAATAACGATAT 16839 35 100.0 36 ................................... GTGGTTCCAAGATTCTCATCTTGATTTTTCCACTTT 16768 35 100.0 36 ................................... AATTTCATGAACTTTTACCTTTGAAATTGGGCACTA 16697 35 100.0 41 ................................... ACAAGAGATGCAGCAATAGCGGTTGCAGCAATAGCAATTTT 16621 35 100.0 36 ................................... TGCAGTAGTTTTAGTATCTGATCGAGTCAGTTGCTG 16550 35 100.0 40 ................................... AAGATGTTTCTTGTGAATAAATAGTAGCTTCTGAGCCACC 16475 35 100.0 41 ................................... AGACTTACTAAGATCAGGCCTGTTAAAAACTAGTGCAAAGG 16399 35 100.0 42 ................................... TTTATTGTGTTTGCTAGTTCCAATGGCCTGCATTTTTAGGCC 16322 35 100.0 39 ................................... GAAAGAATATTGTTAATATAACTCCCCAGCTAAATTTCA 16248 35 100.0 44 ................................... TTCGTGATATAGTTTAAAACCGTCATCAATAATCTGTCTAATGT 16169 35 100.0 40 ................................... AGCTCAGCTCCCTCAGACTTGTTTGGAAAAAATCGACCAC 16094 35 100.0 40 ................................... ACCAGCCTAAGATTATCCTTGCAGACATCTTGAGTCATAT 16019 35 97.1 36 ..........A........................ CAGTCTCGGTGTAGTTTAGATTTGCGTTCCGTAATT 15948 35 100.0 41 ................................... ATTTTTTGCGATCGAATTGTGAGAGCTAAGGAAACCTTGAA 15872 35 97.1 40 ..........A........................ AATGTTGTATCATTCTCCTTGATATTTTTCGGGTCTACGA 15797 35 100.0 39 ................................... CCTGCTGCTTTACAGACGGCTTGAAGCTCTTCTGGTGTT 15723 35 94.3 39 .........................AA........ GGGGAATTATCACAGACTTCCTTCCCTGACGGAAAGGTT 15649 35 100.0 41 ................................... AAGAAGTACAGCTACTATTGAACTCTTCATTGAAATTTCTC 15573 35 100.0 39 ................................... GGCTAATTGCTTCTTTTGCATATTTACACTATATAAATT 15499 35 100.0 42 ................................... CTCTTGGCGATGGTGAACAGGGACAAGTGGCATAGATCTACT 15422 35 100.0 40 ................................... TTCATAGGCATGTGTAATTAATGTTCTCGAAATACTGACA 15347 35 100.0 39 ................................... TTCAGAAAACTAAATCCGGGAATGTATTGAGCTACGACA 15273 35 100.0 40 ................................... ATAGGCTGTCCACCAGCCTTGTAATTAGTAGGAATAGCAA 15198 35 100.0 44 ................................... TCAAAGGTAAGCTGTTTTTAAATTACGCCTACCTTTCATAGGAT 15119 35 100.0 43 ................................... AAAATGAGAGAAAACAGCATTTGATCCTTTGTTGCGTACATAC 15041 35 100.0 38 ................................... TCCTTACCAAGAAACTCCTTAGTCATTGGCATTCTAAT 14968 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 30 35 99.6 40 GTTTCACGCCTAACACCCCGCAAGGGGACGGAAAC # Left flank : GGCTGAAATGGCGGCGGCTGATCGTTTGCATGGTGAGTCTGCTGTGACTATTTTTGGGGTTGTTTCTAATGGTATTACTTGGGAGTTTGGTAAGTTGGAGAGACGAAATTTTACGCATCATCCTGCAACTTATAGTATTTTTGAGTTGGATCGGTTGTTTGCTGTGGTTAATTACATTTTTCTGCAATGTGAGATCCAGTTGGCTGGTTATTTAGGCATGGTGGCTTGACTGTTGCTAAGTTTTTACATAATTTAATGTTATCGAGCTAGACAAAAACTTGGTTTGGCAGTTATAGTTTTGGCAGTCACCTCCATAGGTGGCATGTACCTTGAAAACCGCATTATTACGTTGACCTATGGAGGTCGCTCTCTCCATAAGGGTTTCTGCTTTTATATTTGTCTTCTTGTTGCGAATTTAGCACTCTTATTGACTATGTAAATGACCTATGGAGATCGACCCTATTAAAAGCTTTACTGTGTAAGCCTCAAAAATGTGAGGT # Right flank : GTAAGGGAAAGAGAGAAGAATGAAGATCGAAGAATGAAGAAGAAAGAAATATGAAATTTCTGCAATAATATAAAATTGAATTCTTGATTTTCAATCTTCATTTTTCCGTCTTTATTCTTCCCTCTTCAATCTTCCTTCTTCCGCCTTTCTTATTATGTTTGACCTACGTGATCGCACCAAAAGCTTTGCATTGAGAATTGTGAAATTATATACATCACTGCCCAAAAGCACCGAAGCCCAAGTATTAGGAAAACAAGTACTGAGAAGTGGAACATCAGTTGGGGCGCATTATCGAGAAGCAACCCGTGCGCGATCCAATGCGGAATACATCAGTAAAATTGAAGTTGGACTGCAAGAGCTAGAAGAAAGTATTTACTGGCTAGAGCTATTAGCTGAAGCTGAGATTATCAAAGCATCTAACTTAGCTAATCTCATTCAAGAAGCGGAAGAACTGATTGCGATTTTTGTGACTTTGGTGAAAAAAGCAAAAGATAAAGTCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACGCCTAACACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 11453-733 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000197.1 Pseudanabaena biceps PCC 7429 scaffold_00197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 11452 37 100.0 35 ..................................... CGGGCGATCGGCAATGAATATTAAAAATGTTTTAG 11380 37 100.0 35 ..................................... AGCTACCAACGTCCACTATCGTATCTAGCAGAGAA 11308 37 100.0 39 ..................................... GAAACCCGATCTGATTTCTATGTCAATGATATTGCCGAG 11232 37 100.0 37 ..................................... TCAGTACCCATCACTTTTTACAATTTTGGCAAAGCAA 11158 37 100.0 45 ..................................... TCAAGTGCGACGAAGGATCGGGTTCGCATTTGGCTGGCGGCGCAG 11076 37 100.0 40 ..................................... AAAGCTTCGTGGCAGTGGGGTGGGAATGTAGATCTATTGG 10999 37 100.0 34 ..................................... AATTCGTGCGAAGCTTGACTGCTTGCTTCAGATT 10928 37 100.0 35 ..................................... TTAGCGACGGGACTGATCGGGATCGAACCGATGAC 10856 37 100.0 35 ..................................... GTCGTAATTTTCTGGATCGTGATTTGGCGGCGCAA 10784 37 100.0 36 ..................................... CGATCTCGTCCGACGATCGCTTTGTTGGTTGGTAAG 10711 37 100.0 34 ..................................... CGACCCACCCTCACCGACGACACATCAGCATGAC 10640 37 100.0 34 ..................................... CTTTGTTTTAAGTCCAAAATTTCAGCGATCGCCT 10569 37 100.0 36 ..................................... GAAGAAGCGATCGCCTCATTGCGAGAACTTAAAGCG 10496 37 100.0 35 ..................................... TTTTAAATTGTGCTGGGGACAGTTTTGGTTGTTCT 10424 37 100.0 35 ..................................... TGTCTCCCCTAATATTCCAATCTTATCATTCAGAA 10352 37 100.0 37 ..................................... GCCGCTCGTTGTTTTGTTGTTGTTTTGTGTTGTTCGA 10278 37 100.0 40 ..................................... TTCAACCTCTTCGAGCATCTCGCCATAGGCGAATGGCTCG 10201 37 100.0 35 ..................................... CCCGCGGGGTGGGACGATTACCTTGTGCCTGAAGC 10129 37 100.0 36 ..................................... TTTAATAGCAATTGCTTCCGCCGCAAGGCGCAAGAG 10056 37 100.0 37 ..................................... AGAACATTCCAGATTGATAAGTAATCGTGTTCGTGAG 9982 37 100.0 33 ..................................... TTAAATTTGTTGGTAGGGCAAGGAATCAAATAA 9912 37 100.0 35 ..................................... AGCCAATTTGGTCTAGTAGATAGGTAAGGAAGTAA 9840 37 100.0 39 ..................................... TCTTTATCTCAAATGGAATCTCTAATGGTGCAATACAAA 9764 37 100.0 37 ..................................... ATTAAAAAAGTTGGTGATGTACTTGTCACACGCCAAG 9690 37 100.0 35 ..................................... CCTGCACAGGGCTCAAGGATATTCACCTCATCCTC 9618 37 100.0 35 ..................................... AAGATCTTTCCATTGATTAAATTCTTGTTTCACCC 9546 37 100.0 41 ..................................... AGAAACCCCGCAACGAAAACATTCCGTTACGGGGTTTTTTT 9468 37 100.0 34 ..................................... GTGGTAAGACCTACCACTGTAGGAGCCACATAAG 9397 37 100.0 36 ..................................... ACCCACGCATCTCTCGAACCGACGGGCGTACATTAC 9324 37 100.0 34 ..................................... AAGCAATGACCTGTGAAACAGTGGCCGCACATAA 9253 37 100.0 35 ..................................... TCCTACGGGCAAGCCTGATGATAAAAAATCAGGTG 9181 37 100.0 36 ..................................... ATACGCAGCAATATTAAATTCATTTATGAGCAATTT 9108 37 100.0 36 ..................................... AAACCTTTACAGTAATTAGCTTTCCCGACGATATTC 9035 37 100.0 33 ..................................... AAAAAGCTCTCCGACGTGGGGTTGCACAAACAA 8965 37 100.0 44 ..................................... TTGAAGCTCCGTTTCGGGAGCGGTAAGCCCCATCCAAAAGCTCT 8884 37 100.0 34 ..................................... GCAAACTGGGATAAATATGTTTGTGCGTCGGGAT 8813 37 100.0 38 ..................................... CGATCGCTACATTTGAGCCATCAGTTCCAAAATTTGAA 8738 37 100.0 35 ..................................... CGGGCGATCGCCACTTCACTGGGGAAAGTTGCGAT 8666 37 100.0 33 ..................................... GAGTAATGGTAATTTGGTTGTTCGCCCTAAGGG 8596 37 100.0 37 ..................................... TTGTCGTCGGCATAAAAGAATCTGGTTTTACGAAGGG 8522 37 100.0 35 ..................................... TCATGACATAGCGCATACTAGGACTAGTATCGCGA 8450 37 100.0 40 ..................................... TACAGAGGACGTATTCCAAGAAGGAGGAACGATCACAGTC 8373 37 100.0 34 ..................................... AGCGATCGGCTTAATCAAAGGCTTAGTTATTAGC 8302 37 100.0 35 ..................................... GTGTATCAGTGGACTAATCCAGACGGCTCTAATGC 8230 37 100.0 35 ..................................... AAGCAAAGTAGCTTCGTTCATAAATTCAGAAGCAA 8158 37 100.0 35 ..................................... CTTATGAGCAAAACTGAAGTTGCAAATCAATTAGC 8086 37 100.0 35 ..................................... TTCGTTGCGGGGCTTTGTAATAGTTAATCCTAAGT 8014 37 100.0 37 ..................................... AAGTGCAGTCGGGTAAAGGCGTTCAAGCTTTTGCTCA 7940 37 100.0 36 ..................................... GTTTTCCCAATCGATGGGCTTAATAGATTTGAGCAA 7867 37 100.0 39 ..................................... ATCTGATTTGGCGAAAGCTCAATAGCCTCACCGATAGGG 7791 37 100.0 34 ..................................... TCCGAAGTTAAGGGGGTTGGGATTGCCGAGGAAA 7720 37 100.0 31 ..................................... CAAAGAAATTCTGGAATTCAGTACCAGAACA 7652 37 100.0 34 ..................................... TCTCAAATATTCAAAAAGAATGTTGAACGGGATG 7581 37 100.0 37 ..................................... GGACATGATTTGGTACGCGATCGGCTCAGCCATCTTG 7507 37 100.0 36 ..................................... CTCTGTATCTGGGCATTTCCCTTGTGTAATCCTTGT 7434 37 100.0 35 ..................................... TCTTGATTAACCCCGAAGGCAGACCTTTCCTGCAT 7362 37 100.0 40 ..................................... TCCTCGGACTCTCTACGCGATCGCACCAGAAATCCTCTCG 7285 37 100.0 34 ..................................... ACTTCGAGGGAGCCTTTCGCTAAGGAGGGAAACC 7214 37 100.0 34 ..................................... AGAGCACCCGATCGCCCAATATCAATATCTCGCT 7143 37 100.0 35 ..................................... AAAGTTGAAGCAGCAACCCCACAGGTTGAAGCAGC 7071 37 100.0 35 ..................................... TTTGGTGGATAACTGTTTGTAGTAGCGGGATAACC 6999 37 100.0 35 ..................................... ATACCAGCTATCCCGCAGACAACCATCGACGTATT 6927 37 100.0 35 ..................................... TCAGTAGATTCGCCTCAAGTATTTTTAAATGACGC 6855 37 100.0 35 ..................................... GGAATAAATTCGCTTCCTGCATTACCTACAGGTAG 6783 37 100.0 49 ..................................... CTTTCTAATTTTTGCAGCATACTTGCTGAAATAAGCTCCACATCCTTGC 6697 37 100.0 36 ..................................... CTTTCTAATTGGTCTGGGTATGCTACAAATAGACTG 6624 37 100.0 40 ..................................... AGAAAGTTCGGGAGTGTGGGGGCGCTATCGACTATCTGTG 6547 37 100.0 34 ..................................... TTTCAAGGGATCTGGAATAGCGATCGCCCGAAAC 6476 37 100.0 35 ..................................... TTCAATCCATGCCTTGTAGCGTGCGTTTTTTCGGA 6404 37 100.0 35 ..................................... CTGAGCCTAATCCTAGCGCGCCCCAGCCGCTGACA 6332 37 100.0 35 ..................................... AGTGAAATCGAAAATGGAACCCGCAAGCAATTAAC 6260 37 100.0 34 ..................................... ATGTCGCGATCACCTCCAAGTACTCAACAAGGTC 6189 37 100.0 36 ..................................... AATTTTACTATTGAACAACTGGCAGAGCATATTGCT 6116 37 100.0 40 ..................................... CTAGTGGAAAACAACCAACCGCTAGTCCAAATAGTTCTAG 6039 37 100.0 35 ..................................... ACACTTAATCAATTAATGCTAGAATTGAATTCTAA 5967 37 100.0 40 ..................................... CTAGTGGAAGATTGGGCGATCGCCATTAGATAGGCGATCG 5890 37 100.0 38 ..................................... CCTGTACTTAAGGGGCTTTATACCCAAAAAGATGCTTG 5815 37 100.0 38 ..................................... ACCAATGCTCACTCCATTCTGATTGGTCGTAGTGGTGG 5740 37 100.0 37 ..................................... TGCTTGGATGAGGCTGGCGTGCTTTTGAATTCTCGAT 5666 37 100.0 34 ..................................... GCAGCGATCGCCGCACGAACCGCTTCAACGCTAA 5595 37 100.0 38 ..................................... TCAAGCAGTTCAGGAATGCGCGATCGCAGTATATCGCC 5520 37 100.0 34 ..................................... ACATCATTTCAAAGAATTCAAGAACCTCTGCCCA 5449 37 97.3 43 .................C................... ATGTCGTACTGGTTTGCGTGCAAAGGGGACTCGGAATCGGTCG 5369 37 97.3 40 .T................................... ATGTCGTACTCAGAGCAGACTATTCGCGAAAACGTCCAAG 5292 37 100.0 37 ..................................... TTCAGAATCTTTTTTGCTTATCCACACAGATCCAAGA 5218 37 100.0 35 ..................................... CTTGGTTGTGGCGCTACTATTGCCAAGCTTGTAGC 5146 37 100.0 34 ..................................... TCAAGATCTATCCATTCAGGCATTTCAGGATTCA 5075 37 100.0 35 ..................................... GCGCCACTTCAAGCGGCGATCGATGCTGACGCGAC 5003 37 100.0 35 ..................................... AAGAAAAGAAAGAGAGGGGCGATCGCCAATGTTTG 4931 37 100.0 35 ..................................... TTTGAGACATATTCCAGTTACGAGGGACGAGAAGA 4859 37 100.0 34 ..................................... TTGGCATTGGCAATTAGGGTTAAAACCTCATCTG 4788 37 100.0 37 ..................................... GCTATAGGTGACATCCACCAAACGCCCATTCGGTGCG 4714 37 100.0 36 ..................................... AGCTCTAGCAGACTCGAAAAAGGCTTCTTCGTCTGT 4641 37 100.0 35 ..................................... TGGATAGGGATTAAAACCTCATTCAAAGCCATTGG 4569 37 100.0 43 ..................................... CTTTCAGTCATTGATAATTTGCAAGTCCGTAGCTAATAGGCGA 4489 37 100.0 33 ..................................... CTTTCAGTCTCCATTTAGCGGTATCACCACCGT 4419 37 100.0 37 ..................................... AGACCTCACCCCCGAAATAGCGATCGCCCCAACTCAG 4345 37 100.0 36 ..................................... AACTCAAGTCCAAATACTTCGTTAGCGATCGCTTGC 4272 37 100.0 35 ..................................... ATATAGGTAGCTACCAATATTTTTCCTCATCTTTG 4200 37 100.0 40 ..................................... TTACGATTCTGGCACAAATCTGCCAATAATTCTCTTGGAG 4123 37 100.0 34 ..................................... CAATCAATACTACTGATTGGATTTCCTTGACAAA 4052 37 100.0 35 ..................................... CACCCAAGAGCGATCGCTGCTTTGTGCATATGATT 3980 37 100.0 35 ..................................... AGTCCAAAAACTGCTCACTCAGATCCACTCAAATT 3908 37 100.0 35 ..................................... TGCCCTGTTTTAATTTCATCACGAGCGATTAGATC 3836 37 100.0 34 ..................................... CTAGAGTTCAACTTGTCGAAAGCTTCGATTACTT 3765 37 100.0 34 ..................................... ATCCTTCAAAGCTTTAATCCATGAGCCGATGTAG 3694 37 100.0 37 ..................................... TGAGCAACTTATCAACACTGAGTTTGAGGCGACGGCG 3620 37 100.0 34 ..................................... AGGGAATTTGACTATAGATAACAATAGGTAGTGG 3549 37 100.0 33 ..................................... TGGAAATCCGATACGCCTCACCCTTGGCTATCT 3479 37 100.0 34 ..................................... CGATCGCATACTCTTCTTTAGATCGTTTGTACTC 3408 37 100.0 36 ..................................... GATTACATTCATGTGATTCAATCGCGTTAATTCTTG 3335 37 100.0 34 ..................................... TTAGAGTTAAATTCCTCTAAGCGATCGCCCATAT 3264 37 100.0 39 ..................................... GATAGCCAGTTTCGGATGCTCACTCAATACTGGACTCAA 3188 37 100.0 35 ..................................... GACGCACATAATCTTCAGAGCATCCCAAGATTTGA 3116 37 100.0 35 ..................................... CTAGATAATGTCTCTTCTGCTAATTTCCTTTGTGC 3044 37 100.0 34 ..................................... AAGTACCTAAACTCATTAAAAAAATGATTGCATC 2973 37 100.0 35 ..................................... TCAGCAAATATTCCGCTTTATCAGCAAAGACAAGA 2901 37 100.0 40 ..................................... TCAGTTCCCGCCGCATCTGCCCCTGTGGTAACTGGTGCAA 2824 37 100.0 34 ..................................... CTAATTGTTGCGAGGGCAAAATTTAGAATCTCAG 2753 37 100.0 34 ..................................... AAAAATTTCTTGGGGAAGGATTGGGAGGTCTTTG 2682 37 100.0 40 ..................................... CGATCGATTGATTGTCGTCCATAAGGCAAGTGAATTAGAG 2605 37 100.0 35 ..................................... CATCTTTATCGCTACTCTATCTCGCAATTCCGTAA 2533 37 100.0 34 ..................................... GTGACAATCACCATTACCAGAGAACCCGAAAACC 2462 37 100.0 38 ..................................... AAGGTGGGTATAGCGCCGCCTTGTCTGCCCTTCTAGAG 2387 37 100.0 40 ..................................... CCCGCTGCACCCAATTGCACCCTCCCAGAGTATGAGGGAG 2310 37 100.0 39 ..................................... ATAATGCCCGGCTTATCTGGGTTTTGTTGAAAAATGCGA 2234 37 100.0 35 ..................................... ACTTGTAGGGGCAAGCGGGCGCAACGAAACCGCAG 2162 37 100.0 36 ..................................... CAACCCCCAAAAGTCTATAAGCAAGATGCAGTGCTG 2089 37 100.0 35 ..................................... AACAAAAATTTTGAGACTAACGCGAGGTTTAACAA 2017 37 100.0 33 ..................................... AGGCTATGGTGGAGTATTTGATGTACTAGAGCC 1947 37 100.0 36 ..................................... TAAAAGAGCGTCAAACCATAGCTTTACAAGATAAGC 1874 37 100.0 34 ..................................... GCATAGGTTTAGTGGCTACGCTTGCGACTCGTAG 1803 37 100.0 35 ..................................... TTGATCGTCTTGCAATATCTCAACGCTGGCAAAGG 1731 37 100.0 36 ..................................... GAAAGCTCAGCAAGAAGCAGAAGATCGGCAACTAAA 1658 37 100.0 35 ..................................... TGGAACCCTTGCCCAACAGGGTATTTATCCTCAGT 1586 37 100.0 33 ..................................... TCAAATAGAACGCACTACAGTTCGCTTTATTCA 1516 37 100.0 40 ..................................... TCAAAACAAGACATGCTAAACCAATTTAAGATAGCTCTTA 1439 37 100.0 35 ..................................... ATCAAGCTTGCGACTCCAGATGCCAACAATTGCAA 1367 37 100.0 34 ..................................... CTGCCGCGATCGCCCGTCCCCCTAAACCTGTATT 1296 37 100.0 40 ..................................... TTGAAGCCCACAGGCACGTAGTCAGGGCGCAAATCAAAAA 1219 37 100.0 35 ..................................... CTATTAAAAGTGGGTATAAAAAAGCAACTACTTAA 1147 37 100.0 39 ..................................... CTTACTGGAATACACATAGATCTGATTAGGATTCTCAGG 1071 37 100.0 35 ..................................... ATGCTTCACAAAGCCTTACCTTTCGATGCCCCCAC 999 37 100.0 36 ..................................... GACATCGCGAGATTTGGAAATGAGGATTTCCAGATC 926 37 100.0 37 ..................................... AATCCTTTCTAGTACTGGCAAGCATAAAGGAGCAAGA 852 37 100.0 46 ..................................... AAGCCAAAGGCGCATCAATTGTGCATCAGAGAACCATTCGCGCTTA 769 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 147 37 100.0 36 GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Left flank : CATGCCGAGTACTACCGTTTTTAACCACTGATACGGACTGGCAGGATGGACATGATGGACTTGATGGACTTGACTCTGACATTGCTTTAATCTGTAACAACCATCTAGATATTTTCCCTCATCCTTTCCTTTTTAGGACTACCGAAACTGTTGGGCTAATGGCGATCGGCAAATCGGTGAAGTT # Right flank : AAGCCAAAGGCTGCCTAAGAGCGTGTTTGAGAAGTTTTCTGGAGTCAAAAAGGTGAAAAAAAGCTCCCCAAGGTATAGCCTGTCAATAGACAAAAACAAAGACAGCCTTATGGAAGCAACAAAGAAATCATACCCCACAGACTTAACTGATGATCAATGGGAACTGGTAAAAGAGTTGATTCCCGCCGCAGGAACAGGAGGACGCAAAAGAAGTGTGGATATTAGAGCCATACTCAATGCTATTTTCTACATCAATGCCGCAGGCTGTGCATGGCGGATGTTACCTCATGATTTTCCTGTATGGCAGACGGTCTATGGTTACTTTCGGCACTGGCGTATTACCAACACATGGCAAGATATCAACGCTAAATTGCAACAATGGTATCGAGTCAGTGAAGGAAGAGAAGCTACACCTAGTGCAGGTTGTATTGACAGTCAATCAACCAAAATCGCTAGCCGATTAGCATCACCAGAAGCAGTTGGTACTGATGGGAACAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 3455-2370 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000217.1 Pseudanabaena biceps PCC 7429 scaffold_00217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 3454 35 100.0 36 ................................... ACCCAGTATTTTGTTTCCTTCTTAGTTTCAGGATCT 3383 35 100.0 39 ................................... TACCACGGTGTGAGCTAAACCAGCCCCAGAAGTACAAGT 3309 35 100.0 32 ................................... ATTGCCATTGTCCTTATTGCGAAAGTACAAGT 3242 35 100.0 37 ................................... AAGTTACAGGAGTTTGTGCATTGCTCAAATCTGGTTT 3170 35 100.0 40 ................................... GATAAGCACCAGCTACTACCAACTGAGAAAGGTTGATAAA 3095 35 100.0 37 ................................... TTAGCTCCAGAAACAAGAAGTGCACTACCAAGTAAGG 3023 35 100.0 34 ................................... CAGACCTCTTTGCATATTGAGCTACCAGCTCCTC 2954 35 100.0 32 ................................... AGTGCCGAAAGCAGCTAAAATTGTAAATCCCG 2887 35 100.0 34 ................................... AAGGTTTACCCCTTCTTCGGTGGAAACACCTAGA 2818 35 100.0 32 ................................... TTTGTTCTATTTCCACCACTGATTCCCCAGTT 2751 35 100.0 38 ................................... TATGTTCGATGGTGAGCCTGTGCCGGTCGTGCGACCGG 2678 35 100.0 32 ................................... TTGCAAGGACAGCCTTGGCAATGATCACAGGG 2611 35 100.0 34 ................................... CTTTAAAAAAACTGCGAAACCATTTCTAAAAAAG 2542 35 100.0 33 ................................... CGTCTGTCGCTGGTTTTCCAGAGGTGGATGCAG 2474 35 100.0 35 ................................... AGCAAGACTTAATAGAATTGCCGTGATTGCCGATG 2404 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 16 35 100.0 35 GTTTCAAATTTTTTACCCCGCAAGGGGACGGAAAC # Left flank : AAGCTATTCTCAATAATTTGACAATTTTCTTACCCCCAAGAATTTTCGTGTTGTCAAACGTGCTCTAGGCAAGCCCTCCAGAAGCCGAG # Right flank : GGGAGGGAAAGATGGAAGAAAGAAGATCGAAGAGGGAAGAAATGCAAAGAAAAATGCAAAGAAATAAAAAATTACTGTAATCGAATATAATTAATTGCTTAAATTTCATTCTTCGTTCTTCATTTTTCCGTCTTTAATTCGCGGGGACGGAAACGGGAGGGAAAGATGGAAGAAAGAAGATCGAAGAGGGAAGAGGGAAGAAATAAAGATAAAAACCAAAAAATATGTAGCTATTGCAATAATGTAAAATCGAATTCTTAATTTTCATTCTTCAATCTTCCTTTTTCCGCCTTTCCAATTATGTTTGACCTACGCGATCGCACCAAAAGCTTTGCATTGAGAATTGTGAAACTATATACATCTCTGCCGAAAACTACCGAAGCGCAAGTATTAGGGAAACAAGTCCTGAGAAGCAGAACATCAGTTGGGGCGCATTACCGAGAAGCAACCCGTGCGCGATCCAATGCTGAATACATCAGTAAAATTGAAGTTGGACTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATTTTTTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 184-364 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000259.1 Pseudanabaena biceps PCC 7429 scaffold_00259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 184 34 100.0 37 .................................. TGAATCGCACCTATGACTTGATTTGTGTCTAAAAGCT 255 34 100.0 42 .................................. GCGATCGCGTGATTGGTTAGTCGGTTAGGTCTTTGGCTGGCT 331 34 94.1 0 ..............................TC.. | ========== ====== ====== ====== ================================== ========================================== ================== 3 34 98.0 40 TCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Left flank : CCTCCTGTTCCTGCGGCGGGAATCAACTCTTTTACCAGTTCCCATTGATCATCAGTTAAGTCTGTGGGGTATGATTTCTTTGTTGCTTCCATAAGGCTGTCTTTGTTTTTGTATATTGACAGGCTATACCTTGGGGAGCTTTTTTTCACCTTTTTGACTCCAGAAAACTTCTCAAACACGCTCT # Right flank : CAAGCGGGTATCGGAAAACTATCAATGCTGTAAACCATTCGGTGTTCAGTTGTTTCCATGCTTGTCCTAGGCACTCAATAACATCAATTGCATCGGTTTAACCCTATAGAGTCTGCGATTGAAGCGACTCCGACTCAGCATTTTGGAGATGTATTGTGGCTCTGAGAGCTCTTTTCTTGCTTTCTCAAAATTTCCTCCAAAATACAGAACCGCAACTATGGCTGTGGTCATTACTTCGGCATCACTCATCTGTTGCTGTATATTCCCTTGCTGATTCATCGCTCGCAGAATGTCATCACACAGGCAATCAATCGCTACAATTTCATCATTCATTTTTCTTGCTGCTATTCGGATTTTGTCCTTTGTAGCAGCTTTTTTTCTTGTTACCATAGGTAGCAACTTGGGTTAAATATAAAACCCTAAAACCTGCGGCGCACGCTGCGCCGCAGGTTTTAGATCTGGATTTTAAGTATGCTGAAGTACTTACTTTACCCAAAATG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 69-15451 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000147.1 Pseudanabaena biceps PCC 7429 scaffold_00147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 69 37 97.3 34 ..............A...................... TTTTGGGAACAACAGATAACTTACGGAGGGATGA 140 37 97.3 35 ..............A...................... GACGAATTGATTGAGCGAGATCTAGCTCCACTACT 212 37 97.3 38 ..............A...................... GAAAAGAGGATGGAGTATCTGGAAGAACATCAACCAAA 287 37 97.3 35 ..............A...................... AATTAAAATACTCTGCTATATTGATATTCATGAGG 359 37 97.3 37 ..............A...................... AGCAGCTAGAGCAGAGTTTGATACTCAGTGCGCTGAA 433 37 97.3 35 ..............A...................... TTACACGCCAAGGCAAGAAATCAATGATCAACGGG 505 37 97.3 37 ..............A...................... AATAAAAAGCCGCTAAGCTAGCGGCTTTTTTGTCTAC 579 37 97.3 41 ..............A...................... GAGGCACAGGGCTTCACGGATAACTGTGGCAATCTTCCCAA 657 37 97.3 35 ..............A...................... CCGTCACCTCCTACAGGTTCCCCTTCTATTACGTA 729 37 97.3 36 ..............A...................... TTGGGGGACGCTCCATCTACCTCTCCTGTAGGGAGC 802 37 97.3 37 ..............A...................... GTGGCAAGGGTACAGCTTGAAGAAGGTAATACCGCTA 876 37 100.0 43 ..................................... CAAACATTGATAGGGGATACATGGGCTACTCCAGCTTTTGTTA 956 37 100.0 37 ..................................... GGATCTATGGCAGATATCCCATAGCCGCCTTCAAGCC 1030 37 100.0 33 ..................................... ATAGTTGATGACGCTACATCCTCTGCTTTTTGG 1100 37 100.0 35 ..................................... TACTAAAACTAAACATGTATCACTGGTATTGCGAA 1172 37 100.0 37 ..................................... AAGTCGCCTCATGAATTCTATTCACAGGAACAAGCGA 1246 37 100.0 36 ..................................... CATTTATTATTTTTGCTTGCCATATTGTTTCATTCC 1319 37 100.0 34 ..................................... TACCGCACCCCAATCCACCCCTAATATGCGATGC 1390 37 100.0 35 ..................................... ATCAAAATACGATTGGGAGAAAATTAGTAAGGAAT 1462 37 100.0 36 ..................................... CCATCCGATAAGTGATAATACTTGTATTCCGTGTTT 1535 37 100.0 35 ..................................... CAATGCCATCTCGACCAACATAGAGAATATGATTT 1607 37 100.0 41 ..................................... AGGCTTTGTCTAAGCAATTCAATGTCTGAGGGCTTAAGATG 1685 37 100.0 39 ..................................... AATTCTTTTAACTGATAGAATCCCAGAAGATTCTCAGAA 1761 37 100.0 39 ..................................... CTGCTACAGGCACTCTAACCTTAATCCCTAACCACGAAA 1837 37 100.0 37 ..................................... TGAAATGCTAAGGCTCTGCTGAAACCCCAACCTTCAG 1911 37 100.0 38 ..................................... CAGCTATCAATTGCTTGGCTCTATCAAAAACTGCTTTA 1986 37 100.0 36 ..................................... ATAATAAACACCGCCATTAGCTTGTCTTGGCGTAGT 2059 37 100.0 37 ..................................... AGGTGGTGATGACGATGAATGAAGCAATCATTAAATG 2133 37 100.0 37 ..................................... TCACAAAAATCTTTATGGTTTGCCATGATTAAATAGC 2207 37 100.0 37 ..................................... TGAAGAGCGTGCGGGTGGTGTGGTTGAATGGCTGCAA 2281 37 100.0 35 ..................................... ATTGCAGGGCAAATCAAGCCACTAGATGAGGAGAT 2353 37 100.0 39 ..................................... TCCGTTCCCATGAATACAAGCAAGCGATTGCCCGTTTTT 2429 37 100.0 35 ..................................... AACCGCGCCGCTACTTTGACGCGATTGACTTACTA 2501 37 100.0 35 ..................................... TTTGATAACAGAAGATTGAGCATTATTTTGTAATC 2573 37 100.0 39 ..................................... CATGGCTTCTAACAACTTGCTAAACCTTAATATGTTGGC 2649 37 100.0 38 ..................................... TGCATGGCTATCTGCTCGCTTATCAGCACCAAGAGAAG 2724 37 100.0 37 ..................................... AATTCATAAAATTATCAATTACATTTTTAGCGTTGCT 2798 37 100.0 36 ..................................... TTTACGAGCGTCCCTCGTATCTAGGCATTGGCATTG 2871 37 100.0 35 ..................................... AGCTCGAAACAACTTTAACGGCAGGGCGAAAGAAG 2943 37 100.0 35 ..................................... GTATGCAGACCCGACTAATCCAGAGTGGGAAAGAT 3015 37 100.0 34 ..................................... AATGGAACATGCGATCGGGTTTAGGAGATATACC 3086 37 100.0 40 ..................................... ACCATTACCTGTATTGGTGATTTTACAGGGCAAGGCACTG 3163 37 100.0 35 ..................................... GTGGCTACAAAAACAGGCAGTCCAGGTAACTTAAC 3235 37 100.0 35 ..................................... TTGAGATTGAAGACTAGCTAAATATTTAACTCTGA 3307 37 100.0 35 ..................................... AAATCGCTGTATTTGTTCGTGCGTTCCTATGATAG 3379 37 100.0 34 ..................................... ATAGCAAAGCATTCAGAAACATATCCAAAACGAG 3450 37 100.0 34 ..................................... AAAACTCTAAGAGCTTACCGCACGACTCTATCCG 3521 37 100.0 35 ..................................... GACGAACCAGAACCGATCGCACCCAAGAAAAAGAC 3593 37 100.0 34 ..................................... ATACCGCCCTGCGAGTGTGTAGTTAGTAGCTAGA 3664 37 100.0 38 ..................................... ATGGGTAGTCGATTTTTTGGTGTTGCGTGGTGCAGTAG 3739 37 100.0 34 ..................................... TTATCTCCTTTTGCGGGTATCGGATCTGAAGGAT 3810 37 100.0 34 ..................................... GAAGCAACTGAATTTGAGAGTGAGTGGATGACGC 3881 37 100.0 39 ..................................... AAAGAACATTTACAGCTTTCGATAGCCTAACCAATTCAC 3957 37 100.0 33 ..................................... GTACTGCCAACAAGTAATTAATTTTGGTTTTTC 4027 37 100.0 35 ..................................... TTTCGTGTAACAAATTTTCGATTCTTTGTTGAGTA 4099 37 100.0 38 ..................................... TCAGCAATTGAAATGGCATGGCGACTTTTTTAACGGCG 4174 37 100.0 35 ..................................... CATTAACGAAAAACTTGTAGCCATTCTCTTGAGCG 4246 37 100.0 35 ..................................... GATTAATTTCGCAGGAACCGCGCAGGATATCGCAC 4318 37 100.0 35 ..................................... CTTTGGAGTGACTAATAAAATCCTTATAAACGGCA 4390 37 100.0 35 ..................................... AACCGATATGGCTCAAGCCACAGGGAAAAATTTAG 4462 37 100.0 32 ..................................... TAGCAAATTCTTTTGAGCGATCGCCGCCTGCG 4531 37 100.0 34 ..................................... CAAACCGATGGCAACGCTTGATTGCTTGGTAGGT 4602 37 100.0 35 ..................................... ATGCCTTTTCTCCTGTTTCCTTGCGTTGATTATTA 4674 37 100.0 39 ..................................... ACAAGAGTTGCAATAGCCGAGGCATCAGTATTCATTTGG 4750 37 100.0 34 ..................................... ATGGCATTTTGTGGAGTTCCTTGCTCTTTAAGCC 4821 37 100.0 41 ..................................... GAGAACTGCAAAACATGGAGCTTGACCAATTGGGTGGGGAA 4899 37 100.0 35 ..................................... TTGTTCCACCTGTGGGGTTGCCCTAAGATCGGATA 4971 37 100.0 35 ..................................... TAGAGCTACTAATCTGGTTTCTACTGTCCTCTACA 5043 37 100.0 34 ..................................... GAAACTTTAGGGATTAGGCGATCGCCTATTTAGG 5114 37 100.0 35 ..................................... CAGTACTTTGCAAACGCTCCTGTGCAAGTAGTAGC 5186 37 100.0 37 ..................................... GAAGCAAAGATTAGGCGATCGCCTAACGATCCTAATT 5260 37 100.0 35 ..................................... GCTCTGACCATCTCTTCTGCGTTTTTTGAGAGGCT 5332 37 100.0 40 ..................................... CCAGTTCAGTCCTTTATGCCAAGATGTACTACCTGTACGG 5409 37 100.0 34 ..................................... GGCTCCATGAGTGGTGATCATGCCATCTGTGGAT 5480 37 100.0 34 ..................................... GTCGATGATGCCGCCACACTGATCGCACTTCGGT 5551 37 100.0 36 ..................................... GGGCAAGGGCTTTAGATGGGCATTTGGCAAGCAGTC 5624 37 100.0 38 ..................................... AGCAGAACCACAATCAGGACAGTAGTAACGCATATTAA 5699 37 100.0 36 ..................................... TTATCACCCCCCTTGTCACCAATTGGGGGGGACAGA 5772 37 100.0 35 ..................................... GTAGCATTTTTTGAGGAAATCATCAACCTGACCGT 5844 37 100.0 36 ..................................... AGTAACAAGCATCTTCTCTTTATAGTTTGCAGCCTC 5917 37 100.0 35 ..................................... CTGGCAAAAGTCATTTGCAGCTTAAAATTGCTTTA 5989 37 100.0 35 ..................................... ATTCCGCATCAACTGATTTAATCGCAGCGCGTGTA 6061 37 100.0 34 ..................................... TCTGGCCTTGGAGATCCTAAGAAAAAGCAGTATG 6132 37 100.0 36 ..................................... TGGCATTGCAGCCACTTACTGCGAAAGTCTAGATAA 6205 37 100.0 40 ..................................... AAGTGTATGAGCCTTAAAACAAAGCGATGGAAACGTAAAA 6282 37 100.0 40 ..................................... TTTTGACCTTTTGTACCAACTTATCAGCAAATTTGCCCAC 6359 37 100.0 40 ..................................... GAATAGATCTCAAGAATACCGTCTGAAGCAACTTCAAAAG 6436 37 100.0 34 ..................................... TGCGGCGTGACATCGTATCATTGCGGCGTTTGTA 6507 37 100.0 33 ..................................... TAAACAGGCTGGTATAGAGGACAAAATACTCGC 6577 37 100.0 34 ..................................... TTAATAATGGTAACACTATTCAAGCTAATAGCGT 6648 37 100.0 36 ..................................... ATACCAACCAAGCCCCAGCCATCGGCAATATATTTA 6721 37 100.0 41 ..................................... ATAGCCGATCGCATACTTGCCGAAGCAAGCGCACCAACCAC 6799 37 100.0 35 ..................................... GCTAACCTACTCAAGCCATTAAAACAAGCTGCCAA 6871 37 100.0 38 ..................................... ACGAGGTGCGATCGTCCTAGCCGAAGTCGCCAACACAG 6946 37 100.0 34 ..................................... TCAGTTCTCTTTGGCTCAGTAATACAAACTTCTA 7017 37 100.0 35 ..................................... CGGATTTAAACAATCAACTTAATGCGTTGGAGAGA 7089 37 100.0 37 ..................................... TCAACAATGATATAAAAACTCTTAGATTTACGATAAG 7163 37 100.0 35 ..................................... TTGACCAACTCGAGTGGCAGATTAAGTTAGAGAGA 7235 37 100.0 36 ..................................... CGAATGCACGAAGAGCGACAGCGTAAAGCGCTCCGC 7308 37 100.0 37 ..................................... AGTCGCCCCATTCTCTACACAAACTTTATTTTTCCAC 7382 37 100.0 47 ..................................... TTGAAGCTCGAGATCGATATTGTCACCCCTAAAATGGCGCTTCATTA 7466 37 100.0 33 ..................................... AAAGTAATCATTGGCGAAGCTTTGGTGGCTCTG 7536 37 100.0 35 ..................................... TAGAACCACTTTGCCAGATCCCTTTCCTTGCTCGC 7608 37 100.0 36 ..................................... CACTTAAAACAAGAATTAGGATTGAAGATTAATACC 7681 37 100.0 34 ..................................... GGGCAAAGGCTTTACAGAATGAATTGAATCAATC 7752 37 100.0 38 ..................................... ATACCGCGCACGAGCAGCAACAAAGTAGCTCTTGGGAA 7827 37 100.0 36 ..................................... AAGCAGATACACCTCCCGAAGAGGCAACCAAGCAGG 7900 37 100.0 34 ..................................... AAACTTCTGCCCGATCTCAGAAGCAGCTAACAGA 7971 37 100.0 43 ..................................... AAATAGAATCAAGTCTTTTGAGTCCCATTCGGCGAGAGTGCCG 8051 37 100.0 35 ..................................... ATTATTTCCATAAATCTACCACAAAACCGTGTTAT 8123 37 100.0 36 ..................................... AAATTGCAATTTGAGAAGCAATTGGAAGAATCTCGC 8196 37 100.0 41 ..................................... TCAGCCGAAATGTGGCGCAAGTGGTAAGCGCAGTGGTTCAT 8274 37 100.0 37 ..................................... TTATCGTTGATATTCTCATTGATTGGATCTTTAATTC 8348 37 100.0 34 ..................................... AGGGCGACGGCATTGCCTATCGAGTCTACTGGAA 8419 37 100.0 33 ..................................... TAATGCCTATCCTCTTATCTTGGTTGTATTTAA 8489 37 100.0 34 ..................................... CATGACTTGATACCCAGCTTGGACTTAATTTGGG 8560 37 100.0 37 ..................................... CCGATCGCCTTAGTATCGGTGCTTAAATCATTAACTT 8634 37 100.0 35 ..................................... TTGATCACCCGTCTGCCAGATACAGGAGAAGTACC 8706 37 100.0 34 ..................................... GAGTAACACCTTTCTCCCATACGTTGCCTTCTTG 8777 37 100.0 42 ..................................... TAAATAACTCCTCAATAGCCGTACACCAATGCTGGTCGCTGG 8856 37 100.0 35 ..................................... GGGGAGTACTGGGGTGAACTTTACGCCTTCGTGGG 8928 37 100.0 36 ..................................... TTCTTGGGTGTCAAAGATACCATTGCAGTCATCCAT 9001 37 100.0 35 ..................................... CGTAGATCATTGTTTAGTCCTTTGGGAAAAAGTCT 9073 37 100.0 34 ..................................... AGTATTGCGGTACTGCCTTCATTAGCTGCTGGAA 9144 37 100.0 34 ..................................... GTCGCCAACAAAATTAGCATGAGAGTATTTCTTT 9215 37 100.0 33 ..................................... CTAGACATTCCATCACTTGCTTTAACCTTTAAT 9285 37 100.0 35 ..................................... CGAAAACTGCATAACACCCAACAACCCTACAGTTC 9357 37 100.0 36 ..................................... CACCCCAGTACTCCCCGACGATAATGGGGACGAACT 9430 37 100.0 33 ..................................... TCTATTTTAGGCGATCGCTTATCCACATCTTAG 9500 37 100.0 35 ..................................... ACTAACAGCTAATACTTAGTTAGATGTCTATTAGA 9572 37 100.0 35 ..................................... AACTTCGAGCGATGGCTTGGCAGTAGTGGGGAAGC 9644 37 100.0 41 ..................................... CAATAACGGAGCTGAGCATGGTGACTGGCTTTGCGCTTCTG 9722 37 100.0 34 ..................................... ACGACATAATCAAGGACTTTATCCCCAACCTTGA 9793 37 100.0 34 ..................................... TTACAAATTCCTAGAAAAACCCGAATCAGGTCAC 9864 37 100.0 39 ..................................... TACCGCGATCGTTGCGGCATCAGCAAGTATTACAGGCGA 9940 37 100.0 39 ..................................... TTGCGGGTGCTAGAGACAGAACGCCACTAGAACTTGCGG 10016 37 100.0 39 ..................................... AATCTCGAAAGCGACCGCACCTCCTACCTAGTAATGGAG 10092 37 100.0 33 ..................................... ACGTAAAAGGGATTGAGTTTTAAGGCAAATCAT 10162 37 100.0 35 ..................................... ACCACGGGGCAAGCTCAGCAGCTAGAGAAGCAGAT 10234 37 100.0 34 ..................................... CATCGTTGGCTACGGTGTTTGTATGATTATTGCC 10305 37 100.0 33 ..................................... CTCTCGCAACCCCCTCTTCTTTCGGCTCCCTAC 10375 37 100.0 35 ..................................... TTAAAGTGTAGCGATATGCTAATAAATGTAACTTC 10447 37 100.0 35 ..................................... CTAACTTTGATTTGGCTTAGTTCACAGAAACAGGT 10519 37 100.0 36 ..................................... TAAACAAGGCTAAAGCTTTAACTATGGCATTGTGGC 10592 37 100.0 40 ..................................... TCTCTCAGTTCCCGCTGGTCGGTGGGTGCTTGGGGCTTCA 10669 37 100.0 36 ..................................... ACCATTTTGGGGGCGATGCTTGGAAAGGATAGCCCG 10742 37 100.0 39 ..................................... GGCGCACTGCTTTGCATTGATTAAAAAAAATAGCGATCG 10818 37 100.0 35 ..................................... CCTGAATTCTTTTTGAAATCTTGTAACACTTAATC 10890 37 100.0 35 ..................................... CAAAGAAAAGATCTGTGCCATCGAACTCTGTCGCG 10962 37 100.0 34 ..................................... GATTCGTGGATTATGCGATCGGATTGAAATCAAG 11033 37 100.0 37 ..................................... TTGCTCACTGTGGGCACTGGTAACACTGCGGTAGATT 11107 37 100.0 34 ..................................... CTCAGACACCGCCTTTGGCTTCGCCGCCACGATC 11178 37 100.0 36 ..................................... TTCCCAAGGGCGTTTGACAGCATCAACGCATTGTGG 11251 37 100.0 37 ..................................... TTCCATCCTAGAAAGTGGTTGATGGTGCGATGGTCTG 11325 37 100.0 35 ..................................... CCGTAGAGTGAAACAACGTAATACCGCCATCCTAG 11397 37 100.0 37 ..................................... GGAGCGATCGCGGGAGGTGGAGAAGCCTTTGCCCAAG 11471 37 100.0 35 ..................................... AGGTCAATGGGTTGCTTGGTGGAAGGGACTGCTCA 11543 37 100.0 32 ..................................... TTGATAATCATGTGTCAATCTCAAAGCAAGAC 11612 37 100.0 35 ..................................... AGGATCGGGGCTAAGTACCTAGCTTTGTCGTTTCA 11684 37 100.0 36 ..................................... TCTGCAAGGATTCCTGCTACTCTAACAGCGCTAGCA 11757 37 100.0 35 ..................................... GAACTGCAATTGAATTTCGGCAGTGTGCATGGTTT 11829 37 100.0 35 ..................................... CATACAAATTCTGAACGGAAAAACGCAATAATGAA 11901 37 100.0 35 ..................................... AAAAGCCTGTAGTGCGATATCTGAATCGATAGCCT 11973 37 100.0 34 ..................................... AGAGGCTTTGGTGGGTGGCGATCGCGGCAATGTC 12044 37 100.0 36 ..................................... AAGGGATACAAATCTACTCTTAGGCGAATTGTCGCT 12117 37 100.0 35 ..................................... GTTGGTCTATCGGGCGAAAGCGTTGATGGGCACGA 12189 37 100.0 41 ..................................... TCGGTGGATAAACTTTGCGGGTACACCGCAGGATGTTGAGC 12267 37 100.0 35 ..................................... CTTCCTTGAGTGTAGCGATCGCAATGTTAAAAGTA 12339 37 100.0 35 ..................................... CTAGCTTTTCAAGCTCAAGCTTTGCGATCTCGATC 12411 37 100.0 37 ..................................... TTCGTGCGCTGCGCCCAGCGCATGGCTAGAATCTCAA 12485 37 100.0 34 ..................................... TTGGATACGTGAAGGCGCAAAACCTCCTTATCAA 12556 37 100.0 37 ..................................... AGCGCAATACGCTAAAGCAGTAGGGATAGATCCCGAA 12630 37 100.0 35 ..................................... AACGCAGCCTTTGTCCTTGGTGTGGCGACAGATTC 12702 37 100.0 41 ..................................... GAAGGTGCGTCACCTAAGATAGCACGACGTAAGTAATCCAA 12780 37 100.0 40 ..................................... CCCCAAAATAGCCCTGCGCAAATAATCCAATCCCTGCAGC 12857 37 100.0 38 ..................................... TTGGATTTGGACACATAGTACAGGAGTGAGACTCATGG 12932 37 100.0 38 ..................................... AAGAATACCCGATATTTATTACCGTCATCAGACTCGTA 13007 37 100.0 38 ..................................... ACTATGGCAAGTGTAAATATTTACACCCAGCATAGAAA 13082 37 100.0 35 ..................................... TAGTACCCAGTCGGGTGTGGTTTGGTTTAGGTCTA 13154 37 100.0 33 ..................................... AAAGCAGTAAACCGAACTGTTTGGGGATTGTAG 13224 37 100.0 34 ..................................... TTGCCATCACCGCCGATGACCTCAATCTGTGGGT 13295 37 100.0 40 ..................................... TTGGGGTGTGGCTATTATCAACAGCAAGTAGCAGATTTTG 13372 37 100.0 35 ..................................... TAAGGCGATCGGCGCGATGCAATTGACAAGCTTAA 13444 37 100.0 36 ..................................... ATTTGTACCTGTGCAATTTGCAATTGAGAAATGTGA 13517 37 100.0 36 ..................................... GGGCGGATAACGGATAGGGTTGGAGCATTTTGAAAA 13590 37 100.0 36 ..................................... TTGTCGGTAATCCTAAAGCTTATCAGAGCATCAGCC 13663 37 100.0 35 ..................................... GGATAAACGTCTAACATTCATAGAAATCAAGTTGA 13735 37 100.0 35 ..................................... TTGGATTTGGACACACAGTACAGGAGTGAGACTCA 13807 37 97.3 35 .................C................... ATTCAGGATTCTACTGGAAGTACTCCTTCCCCTAT 13879 37 100.0 35 ..................................... ACTATGCGATCGCCGCCAACATCAACAAACGCTTT 13951 37 100.0 34 ..................................... GTCCTTGCTGTCGCGCTAGGATTTGCGCTTCGAG 14022 37 100.0 35 ..................................... CCCCTCCCATATAGCGGTCGTCAGGATAGGCAGCT 14094 37 100.0 40 ..................................... TTGAAGCCAAGCCCACAGCGCAAGGAAAAAGAGGCAGGGC 14171 37 100.0 34 ..................................... GACCTTCTCTCGCTGCTTTGGATGTAGGTGATAA 14242 37 100.0 41 ..................................... ACTATCGACCAAAATGCAAGGGCATACAGGGATGATATCAA 14320 37 100.0 37 ..................................... CTGCTCCTTTTTCCTTGCTGCGGGGGCTTGACGTGGC 14394 37 100.0 35 ..................................... TGCTTGAAGGGACTGACGTAAGGAACGAGCGCAAC 14466 37 100.0 33 ..................................... TGAGCCGTAGGTATCGTGGGCGCAGACCGAACT TTTTACC [14487] 14543 37 100.0 36 ..................................... CAAAATCTTCTGTAGTCGCCTGTCTTTCCTGCTTAA 14616 37 100.0 39 ..................................... CGGCTATGAGCCTTATGGGATGACTGGTGGCTCTCTCTG 14692 37 100.0 34 ..................................... CAAGCGATGACCAGCTACGTGACCACAAAATATG 14763 37 100.0 39 ..................................... AAAATCTTTTGGCTTTCTGTAAACGTTTTGCATCCCAAT 14839 37 100.0 33 ..................................... GCATCATTAGCCTTGAGAGATTGGCTATGCATG 14909 37 100.0 35 ..................................... TTAACTATTGAATGGCAAGGACGCAAGCCGAAGCC 14981 37 100.0 36 ..................................... ATAATGGGCGATGACTACTTACTGATTACAGCTAAA 15054 37 100.0 34 ..................................... CTAATTCGATTGTGTTGTATCCCGAATCCGAAAC 15125 37 100.0 36 ..................................... CCATTCCCTTTGTATTCTATCTCTTTCTTGAAATGG 15198 37 100.0 36 ..................................... CCGCAGGGGTTTACGGATAGTTGTGGGAACTTGCCA 15271 37 100.0 34 ..................................... CGGACTTCTATCCCAGAAACTTTTCCTGACTGAA 15342 37 100.0 34 ..................................... CAAGCCCAATCGCATCATATCGCGCGCGGGTAAG 15413 37 91.9 0 ..........................T.....T.G.. | C,G [15439,15444] ========== ====== ====== ====== ===================================== =============================================== ================== 211 37 99.8 36 GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Left flank : TCATCTCCTGCTTAATACTTAATTTACCTTCTAACCCCCTTTTTATGCAACAACGCCTTTTCTGACTAG # Right flank : TAAGTTGATTAAGCTAATCAGAAAAAGAGCAGGAAAAAGTAACCCAGAGAATGGAGAACTGGGCAAATCCAAGAGAATGAAAAGGAGAATATTTAGGATTAGGAATTAAGGATGTCTTTGTTGACCTTTTTGGGACGAGAAGCGCGTTTTTTTGATGATAGGAAAGCGAGGATAAGGATCGCGCTTGCGCCCAGATTTCCAACCAAGAGACTTACCACGAGGTTTCGGAGAACAAGCAGGAGAGCCGATCCTGACTAAAAGTGCGGCAAAGCCCTGACTGGAGTTTAGACTAAGTTGATTAAGCTAATCAGAAAAGAGCAGGAAAAAGTAACCCAGAGAATGGAGAACTGGGCAAATCCAAGAGAATGAAAAGGAGAATATTTAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 342-1614 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000360.1 Pseudanabaena biceps PCC 7429 scaffold_00360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 342 37 97.3 36 ..G.................................. GCGGTAGAATAGTATCTGCCGATCGCTTCGTCTAAC 415 37 100.0 34 ..................................... ATTTACCAGCCCGTGGCGGCGCGGCAATAATTTG 486 37 100.0 36 ..................................... ATGTCTGCCGAGATGATTTTGACCGAACTCATACAA 559 37 100.0 39 ..................................... CCAATATAAGATTACTGCGTTCATTATGGCTTCTATTTC 635 37 100.0 36 ..................................... CCTCTATGCCAAGCTGCTTATACTCAGCTTTCCAGA 708 37 100.0 39 ..................................... CGATCGGATTGAAATCAAGCTCATGGAGGTAGCAAGCTA 784 37 100.0 35 ..................................... ATCTCAACCTCTTTCTCTACTTTCTGCACCCTAGA 856 37 100.0 34 ..................................... TGAACTAAACAATATTCCACTAATGATTAATGCT 927 37 100.0 35 ..................................... CAAAACCTTTAGCTCGGCTGGCTTCAGTTCTTTAC 999 37 100.0 36 ..................................... CTAGTGGATATTGAATCGGCATACTCAGGACGCGAT 1072 37 100.0 37 ..................................... TCCTCGAGGTGGGCAGGGGAAATAGATTTTGTTGCCA 1146 37 100.0 35 ..................................... TGGCGATCGCCTAATGTATTCTCTGGATTTCCATT 1218 37 100.0 35 ..................................... GATTCGCTGCGATCGTGCTTCAGTACTTGGCAATC 1290 37 97.3 36 C.................................... TTTTCAAAACATTTATTCGTGCGACATCCGATTGCA 1363 37 100.0 35 ..................................... AGCCGAAAGGATTGCTACGACTTGATTTGCATTCT 1435 37 100.0 35 ..................................... CTACTGTTCACTTTTCGAGGAACATGCTACAGGAA 1507 37 97.3 34 .T................................... TATCCTCAGCCCCATAGAATGCCAATCCCTCAAG 1578 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 99.5 36 GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Left flank : ATGATCAGTGCTCCCAGTGCCATCCGAAAGCTCTTGGCTGGTGCTCCTTCACCTGAGCTGAATTGTTCTGCATATTCACTCTCAAAACTTTCCCATGGGATTAGTTCCGCTAACTTTACCCATCGATTCTCTCCTGATAGTTTTCCACTAAATGGAAGATAGAAGTTCTCGAATGATAGTTGTCCTTTTGCGGAACGTCGGTACATAAAATTTTATTGATGCAAGGATTTTTCTTGTTTTTGGGCTTTTTCCTTGCATTCTATCAGCTTTTACAACCTTTGGAAACTACTGATTGCAACTGTTTCTGCCTTTTTCAGCAAGCCCTAGGTAATCAGAATCATG # Right flank : CAAGGCGATCGGGGGTGAGGGAGTCCTTGGGTGCATCTCAGTTTTGCAAGCCCTAAATACGCTTAGGATGAGAAGGAGAGAAAAACCCATTAAGATAGGCAGAGCGATGTTTGAGGACTTGAGGAACATTTTTTGAAGCCCATTGTGCTCCAGAAATTTGTCCCCGCCGATCAATCTGCTTAACTAAAGATTCAACAGCACCAGAACCAATTGGAATCGATTGATCATGAAAGTGTCTGTAGCAAGGAATGCGATGCCGATGCTTTTGGATATAAGCCAAGAAATTCTCAATACCTGAACTTGCAGATGATTGTAGGATATCCACTACCTGAGCTAATTCACCGTTCCATAATAATTGTTTAATCTCATGTTTTAGCTGGTCATTTAAGTCGGTTTTCCAGAGATTTTCGACCAAGTGATACCAATCTAAAGTTTCACAACGTTGTTGAGCATTGCCAATCTTGCCAAATAGATTCCAAATCCCATCATGCCCATCACCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 90-775 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000449.1 Pseudanabaena biceps PCC 7429 scaffold_00449, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 90 37 100.0 36 ..................................... CGATCGCACACGCTGACCCATCCCGAATTTATCAAA 163 37 100.0 34 ..................................... AAGATTTCAACGTAGGCAAAATGGCGAGTGTAGT 234 37 100.0 37 ..................................... TTTGTAGGCGATCACAATGAAGATAAATCGGCTGCTG 308 37 100.0 35 ..................................... TTTGAAATAGCTGAACACAAGCACTTTTTCACCGT 380 37 100.0 33 ..................................... CTGCATTTGTGAATTCTCTGTTCGGAGCTTTGG 450 37 100.0 35 ..................................... ACGACGATTATCCTTAATAGCACCCTCAAAATGTG 522 37 100.0 35 ..................................... ATATATTTTCACCGTGAATAGAAATAAGAACTTGA 594 37 100.0 34 ..................................... CTCCTTTGGTGTATGCAAAAAAAAGAGAAGAGAT 665 37 100.0 37 ..................................... TTTAGCCTCCCTATCGCCAAGTGAGAATACTCGCTTG 739 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 35 GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Left flank : AGGCTTTTTTCTATGTCGGCATGATTCAGATCCTCCTCAAACGTCTCGCTTAACTTCTCAAACACGCTCTAAAAACCTTTGCAGCTTTAG # Right flank : TAAATCATGAGCTAACTCTAGGTAGGGCTTGCTGAAAAAGAGACTAAGCGGAAAGTGGTAGGTAAAGAGGAAGAGAGTAACACTTTGACTGTCTCCTAGGAAATAACCAAGAAAGAGAACTAAATGTAAAGAGTTGTTTCCCAGAAGGAAGAACCAAGAGTTGCCAGCAAAACATAAGCAAAGAAAAACAGAAAAAAACAAGCCGCTTGAGCAGCAATTCCAAATTCATCACCAAGAAAGTGATAGCGATCGCGGTTTCCGAAGTATGAGCCAATTTCGTCATGACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 5266-190 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000058.1 Pseudanabaena biceps PCC 7429 scaffold_00058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 5265 37 100.0 35 ..................................... ATCAAAATACCGAAAGATGCTGAAAAACTCTATTG 5193 37 100.0 36 ..................................... GGTTTTTAAACCCAAACCTATGAGGTTGATATGAAA 5120 37 100.0 35 ..................................... TTTCTGATAAGCTAATTTCTCAGTAAGTTCTCGTA 5048 37 100.0 36 ..................................... TTGCTTTAATCTGGGCGATCGCCTCGGTCTGCCAAC 4975 37 100.0 35 ..................................... CAGTGAACGGACGTAGAGCCGTAAATAATAACTGG 4903 37 100.0 35 ..................................... TGGTATCCAAACTGCCATAGACAATACCCAAAAAA 4831 37 100.0 34 ..................................... TACTAGAATTGAGGTATATAAAAACAGACCTAAT 4760 37 100.0 36 ..................................... GTCTCAGAAACGCCTACAGCTATAGCAAGCTTTTTC 4687 37 100.0 35 ..................................... TCATTTTGAATAATTAATGCAGAGCAGAAATAAAC 4615 37 100.0 37 ..................................... AAATTTTTCATTGGATTTTTCGATGTCTGTCCGCAAT 4541 37 100.0 35 ..................................... ACACTTGGCAACAGTGGTTATGCTCGGCACTCAAC 4469 37 100.0 34 ..................................... AAAGCGATCGACTAACCCCATAACCAATCACCAA 4398 37 100.0 35 ..................................... ACAAACCTCAAACCTAATCATGCAGACCGCATTCC 4326 37 100.0 36 ..................................... AATGAGCGCTTCATTCGACAGCAAGACTTTCGCCAT 4253 37 100.0 39 ..................................... TTACCTAAGCTTCGTGCAAACCTAGAAAATGGAAAGTCC 4177 37 100.0 35 ..................................... AAAGCGATCGACTAACCCCATAACCAATCACCAAT 4105 37 100.0 35 ..................................... AAAGCGATCGACTAACCCCATAACCAATCACCAAT 4033 37 100.0 40 ..................................... TCAAGGAAGCCTTGCAACTCTAGAAACTGCAAATATGTCT 3956 37 100.0 37 ..................................... TACCTCTACCACAAAGAAAACAGTGTCATTAAAGCTG 3882 37 100.0 34 ..................................... ATCTTCCGAAGGGGTGTTCCCAAACAAGAACGCA 3811 37 100.0 34 ..................................... ACGTATCCGTAGAATTGAGTCGCCGGAATAGACT 3740 37 100.0 34 ..................................... CTTCCATTTCATTCTCCTCTTAGGGCGGATCGTA 3669 37 100.0 35 ..................................... CCAAATAGTAAGTATTTGGGAAAATGATGGGAGGC 3597 37 100.0 35 ..................................... CTAAGGTACTTTGGCCCCGATGGATTCTCAGGGAC 3525 37 100.0 34 ..................................... GCGGCGAACAAACATATCCACCCCAGTTTGGGAT 3454 37 100.0 34 ..................................... TGGGAACATCCCTTTGGAAGATTACTCCCCTTGA 3383 37 100.0 35 ..................................... CCATTTCTGATAAATCCTTTGGCGAGGGAAATGAA 3311 37 100.0 38 ..................................... TCGCCTACTTGATTTCGGAGATTAACGGATTACAAAAA 3236 37 100.0 34 ..................................... CGCATACCTTGCAGATGCAATCTGATATTTTGTG 3165 37 100.0 35 ..................................... GCATTAGCTGAATTTATCCTGTCAAGTCCGAAATG 3093 37 100.0 40 ..................................... AAGCCCCTTGGCGACGTACGGAATCAGCCCCCCTTTGGAA 3016 37 100.0 35 ..................................... GTAGCGCGCGCGTGTCAATACGACCACTTCTTTCG 2944 37 100.0 35 ..................................... AAGAAAGGGGGGAACTCATTGCCAGCTGAGACTAT 2872 37 100.0 35 ..................................... AAGTTGGCTCGGGTAAAGGCGTTCAAGCTTTTGTT 2800 37 100.0 35 ..................................... CCAATCTTATCATTCATAAATTCGCCCAATTGAGA 2728 37 100.0 34 ..................................... CGTTCGCCGCGATAAAAAAACCTACACAAAAAGG 2657 37 100.0 36 ..................................... AGCAATCCGAAAAAGAATTCATTCCATCCAAGGGCA 2584 37 100.0 33 ..................................... AATTTACACATTATGTCAAGGTGTTTAGGGCTT 2514 37 100.0 34 ..................................... ATTAGGGCTGGTCTCCATCATTCTTCCCAGTATC 2443 37 100.0 38 ..................................... GCATACCCATAGAATTGAGTAGCTGGGATAGATTTTGC 2368 37 100.0 38 ..................................... TTTTTATCGCGCCGAACGAGCATATCTACCCCAGTTTG 2293 37 100.0 35 ..................................... TCCTCTTCATTTACGTCGCCAAACTTCTCTTTATA 2221 37 100.0 40 ..................................... GCCAGTGCCATAAATAAGCCTTCCATTTTATTCTCCTCTT 2144 37 100.0 40 ..................................... GCCGCGATTGTTGGAATATTGCAATTTAAAATCCCACTCA 2067 37 100.0 35 ..................................... GTTTTGAGGAACGGAATAATAGAACTTCTGTATCC 1995 37 100.0 34 ..................................... GCTAAGACGTATTGCTACTGGTCAAGAACCTAGC 1924 37 100.0 37 ..................................... ACCTTTACTTAACAAGGATAGAGCTATGAGTTATGCG 1850 37 100.0 48 ..................................... TGATTAAAGCAAAGATAAGGTATTAACTTATGATGCAAGGAATGAGAG 1765 37 100.0 35 ..................................... GGACAGGCGTCTAACATTTATCGAGATAAAATTGA 1693 37 100.0 40 ..................................... GGAACATCAAAAAAGAGGGGCACTCCACATGCACTTAGCT 1616 37 100.0 36 ..................................... AAGAATAAAGAGGTAGTTGACAGGTCGCCTGACGGC 1543 37 100.0 36 ..................................... TGTAGGCTTACCAACAAAGTATGATCCCTTAACCTT 1470 37 100.0 36 ..................................... TCAATGCAAGACACTTTTAATCAATTTAAGATAGCC 1397 37 100.0 36 ..................................... ATCAACAATTTAGGCAGTATTTTACGGACGCTTGGA 1324 37 100.0 35 ..................................... ACGGGTGCTGTAGGCGAGTCCCGTCGATTCTTCTA 1252 37 100.0 35 ..................................... CCACATCCATCGCATAGGATTTGGTAATTGTTTGG 1180 37 100.0 35 ..................................... TTCGGTATACATTCTGCATCCCAATCGTAATCTGA 1108 37 100.0 40 ..................................... TTCGCCGCATCAAATTCCTTAAAAGCTGACACAGCATCAT 1031 37 100.0 35 ..................................... ATCTGCCTTCAAGGATTTCGATCGCATCATCAACA 959 37 100.0 37 ..................................... AAGGCAAAAAAAGCCCAGCAACGGAATGTTTTCGTTG 885 37 100.0 35 ..................................... ATATTCTACCGTCTTTCCATGGTCACCCGTCTCAA 813 37 100.0 36 ..................................... TGGCTGTCGCGCACAAAAGCCCGCTGTATCTACCTC 740 37 100.0 37 ..................................... CGGCTGTGGTACGCTACGGGAACGGGATATAGACGGA 666 37 100.0 35 ..................................... TCGTTTCGCGCCGCCTTTTGCTTGAGATAAGTCGG 594 37 100.0 34 ..................................... ACCTGATGGCGCAGAATTGAACCCCGCATCAGGC 523 37 100.0 34 ..................................... CCCGTATCTTCAGCTTCCAATGCGTTCATTTCGG 452 37 100.0 42 ..................................... GCAGATCGACTTCCTTCCATCCCTGCGCGATCGCCTCACGCT 373 37 100.0 38 ..................................... GTTGCGGGTACGACTGCGATAATTCGGGCTTTCAATGG 298 37 100.0 35 ..................................... GCGTCAAGATGTTCACCAAGTCGCGCCGGATCGGG 226 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 70 37 100.0 36 GCTTCAAAACCTCTAAAACCCTTTTAGGGATTGAAAC # Left flank : CGTACTAAGATTCATAAGATCCTCAAGTCCTATGGGCAATGGATGCAGTTTAGTGTCTTTGAGTGCGAGCTTACTGATGCTCAATATGCCAAGTTGCGATCGCGCTTGAGTAAGTTGATTAAACCTAGCGAAGATAGCATTCGCTTTTACTTCCTATGTGGTTGCTGTCAGCCTAAAATAGAGCGTATTGGTGGCGAGCAGGTGCGAGACGACACAATATTTTTCGCTTGATTTTTAGTTCATGATTTGCGCGAGTCGTTGGGTGTTTTTGAGGAATGTATGCAATTGTTGGTAATAAATGTGTTAACTGGTATGAATTTGGAGGCGATCGGGCGCGTTGTTCGGTTCGCGCAAGTCCTGATTGCTTTGCTGCATCTAGGTTTCCAATGTTTACTACAAGATCGCAATTCGCTTCAATCAGCCCAAATCTGCTACAATTGCGATCGTTCGCGCAACTGTACCTTGAAAACTAAATATGATATAGTTTCTAGGCGCGAACG # Right flank : CATTGAGTTTGCCTTTATCAATTTTGTTTTTCTGACGGCGTTGTTGCATGAATAAAAAGAAGACAAAAGAATAGAGAATATTAGGATAGATAATTAACTAACAACAGAACAGGAGACAGGTTTAGCAAGTTGAATCATGCGATTAAGCGCAGCACATTTGATGAACAACTCAACCGCCTGATTGTCAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAAACCTCTAAAACCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 12293-10442 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWB01000081.1 Pseudanabaena biceps PCC 7429 scaffold_00081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12292 37 86.5 34 .AGAAA............................... GTTCTATTAATCTCAGTCAGCCAAGCACGCAGAT 12221 37 97.3 37 G.................................... ACACTCTGAACTTCGCAGTTCTTGTGGACACTAACTA 12147 37 91.9 38 G...............A.........A.......... AAAGTATACAAGCTAATTCCTTTCAAAGTCACATAGTT 12072 37 94.6 39 ................A...................T GAAATTAGTATTTCCCAAAATTTACACCAATCTCTTAGT 11996 37 94.6 34 G........T........................... AAATATAAGTTTAACAAAGCTGACTGGCTAGCAA 11925 37 100.0 35 ..................................... GATCCAAAATTTGAGCTTCCAGTCGGGTACGCCTT 11853 37 97.3 35 ....................................T TCAGGTACTACAGACTTGCTGCTTCCCCAAGCAAT 11781 37 100.0 35 ..................................... CTCGTAGTATCGCATTAGGGATTGGTGGATTAGCA 11709 37 100.0 36 ..................................... TGAAGATGATGGTGCTTCGCAAGAACGACCCGCAGC 11636 37 100.0 35 ..................................... CGAAACCATTGGGGCTTTTATGGGCTTCGACGATG 11564 37 97.3 35 T.................................... CAGAAGGGATAGAACGGGGCTTGCGAGATGTGAGT 11492 37 100.0 36 ..................................... CAAAGAGGTCTAATAGACATGCCTAATAGACCAGAA 11419 37 100.0 34 ..................................... CCACTACATCAGACGATACACATGGCACAATAGC 11348 37 100.0 35 ..................................... GCAATAATCCTCAAAAGTGCCATAGCTCTTATACA 11276 37 100.0 34 ..................................... CAGCGGTTTGTATTTTGAAGGCGATCCAGCTTAC 11205 37 100.0 36 ..................................... ATATGGAATCGATTTTGCCAGTTGAAATTGCCAAAG 11132 37 100.0 35 ..................................... ACCGCAGTAAAAATCGAATACGGCGTAGCTGTTGC 11060 37 100.0 35 ..................................... ACATTCATCGACATCGTGGTGATGGACACTTCCCC 10988 37 100.0 33 ..................................... CCAAATAGCTAAGGCCGTGGGAGTTGTAAGCAG 10918 37 100.0 36 ..................................... GCTGTTCCCAAGCTATATAGCCACCAACGACCGCGG 10845 37 100.0 35 ..................................... CCGATCGGTGCAACTGTACGCGAGGCAACGGGTGC 10773 37 100.0 37 ..................................... CGCAGTGCTTGCTGATTGGAGGATTGTCGATTATTCG 10699 37 100.0 37 ..................................... GCGAATTTATGAATGATAAGATTGGAACTTTGGGGGC 10625 37 100.0 36 ..................................... CTAATAAACGAAACTTCCACGACTGATAAAATCCCA 10552 37 100.0 37 ..................................... TTTATATCTGGCATCCATCAACTCGGTGAGCAGGGCT 10478 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 26 37 98.4 36 ATTTCCAATCGATCGCGTCCCCTAGCGAGTAGGAGAC # Left flank : TCTTTGTCTGAGCCGAATAGAGATGGACGCTTTTTAGTTTTTGGTGTTTTTCGAGGTGGACGACTCGATGTTTTATGCCGATCGCTTTGATTACCAATTGCTATTGTGTCGGAAGCTAGGCTTGCTAAGAGCGCTTTGGCATGGACGATCTGAGCGTGGGCTTGATCAACTCTAGCTTCATTCTCATCAAGGAATTTTTGCAGCCGATCTTGCAGGACTGGTAAAAAGTTAGTCGGGAGGTTGGATTGTGGGTTTATAGGTGAATTTGCACTCATGTTTTTGGAGCCTAGACCAGATATTAATTTACCTTTGCGATCGCTATGGGAGCGATAAAAATTGCGGGTCTTTGTTCTCATTGTAATAGAAATTACAAGTTATTTTTAAGCGATCGCCTTTTCGAGTTAGTAAGTAAACAAAAAAGCAGCCTGTTTGACGGACTGCTTTTTTATTAGGCGATCGCATCCTCTAAAAATTGGGATACGTGACCTTTCCCTTACCAA # Right flank : CACCCACGCTTGAAAGTCTTATCCAGTCTAACTTTTAAAGACTAGTTGCGCGGAACAGATTTATTGTAGCAAATTAAGCTTTGGTAACACAATATTTTCTTCTGCGGAAAACATCGTAAACCCATATTTATCAGTGCATTTAAGACTTGCGCGAATCTACATATTTGACTATGGGCATTCAAATCAATACTAGGCAACAATTATAAAGCTTTAAATTGCAGGTTATCCAAAAACAGCACATAGTTCGCGCTGTCTAGCAGTTAATAAGCGATCTCCTTAATCACCTCCTTCAAGTCCTTATGCACCTGTGACATCAAACTAGCTTCTTCTATAGATTTGAATTCTTCTTGAGATATAAAGTTGAGGCAATTAAGGACTCTTGTTTTCCATTCTTTTTCATTATCATTAAATATCTCCCAAGCTTTAAATACTGAATTTCTATCCTGCAATCCCTCCAATTTATGAAAAAGTTCGTTTCTTTTGTCAAAGACTTTATTCCC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCAATCGATCGCGTCCCCTAGCGAGTAGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //