Array 1 4709123-4707654 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011104.1 Photorhabdus thracensis strain DSM 15199 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4709122 28 100.0 32 ............................ TTTTGTATTTCCATTCACTGTCTTTCCGTTGC 4709062 28 100.0 32 ............................ CACAGAATTGAACCATTCCAAAGGGGGCTTAC 4709002 28 100.0 32 ............................ GTTCGCGGGGAGCACTTTGGTTATTAAAAAAA 4708942 28 100.0 32 ............................ TTGAAATGCGTCTCCTTGCCACGTTCCACACA 4708882 28 100.0 32 ............................ GGCGGGAACGTTGTCATAACGTGCATCAAAGT 4708822 28 100.0 32 ............................ ATTTCCAGTCTCTTTCTGCTGCTCTCAATAGA 4708762 28 100.0 32 ............................ GATTAGGCGGACTGTTAAAGCTCAAGCACACG 4708702 28 100.0 32 ............................ TAGCACTTGCGAATCATCCGGTTATTCTTACG 4708642 28 100.0 32 ............................ AAATCGCATTAGGTACAAAGCGTTCTGAAACT 4708582 28 100.0 32 ............................ ATATGAAATAGAAATAGTGACAGAGATAATCA 4708522 28 100.0 32 ............................ TTTCTGCTTGCTGATGAAGCTCTTCGGTAGTG 4708462 28 100.0 32 ............................ TTTCGAATTTTCGTTAGCCTTTTTCTGTTCGT 4708402 28 100.0 33 ............................ TGATGGGTATGCGTATGCTAATCGTGGATATAG 4708341 28 100.0 32 ............................ GCGTAGACGCTGCATTTCCCAACCAGCATTTC 4708281 28 100.0 32 ............................ TTTGCGCCGATGCTATCTTTCGCGGCTTTAAT 4708221 28 100.0 32 ............................ GAGGTGCACACGGAGGCAGGGGCAGCGCTAAA 4708161 28 100.0 32 ............................ CGTTCGGTTGGGCTAATGATCCCCATGCGTTC 4708101 28 100.0 32 ............................ TGTGCACGGCATAAGGTTCTTTGGTGAAATAC 4708041 28 100.0 32 ............................ TGCTTAATAATATTCACGACGTTAATTTTAAT 4707981 28 100.0 32 ............................ AATTTATAGCGGGAACTGAGACCGGAATATTC 4707921 28 100.0 32 ............................ ATTTTCATATGTTAATTTTGCTACTTCTGTTA 4707861 28 100.0 32 ............................ TTCGGTGATTTGATGTTGTATCTTATACGGGA 4707801 28 100.0 32 ............................ GATGGGTATGTTCGATAAACATGAAATAGAAA 4707741 28 100.0 32 ............................ AAAAGAAGGTGTTTGCGGCTGCGTATGGTATC 4707681 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCGTCAGCAGGGTATGCATCGGATTATGGCTAATTATATGCCTGATAATCATCGTAGTGGTAAATTGTTGGAACGATTGGGCTTTGAACGTGAAGGATATGCAAAGAAATATCTGATGATAAATGGGATTTGGCAGGATCATGTATTAACTGCACTGACAGATGAAAAATGGAATGGAAAAAGTTAATTCTCAGATTGTACTGCCAGATAAACCAGGAACTGTCTAGTTACAAAGTTATAGCAGAACTTAAATTACCGTCTCGTCGTAAGCCCCATGATGGGGCTTTTGCTCATTAATGGACAAACAGATGTAGAGAGAAGGAGGGAAATGTAATTTGAAAGATGGTGTTTCTTCATACCTTATTTTTGACCCTTTTTTCTTAGTTAATTTTAATACATTGTTTTTTAAAGAAATGTTATTTACCTCGTAAAAAAGGGTTTTTTTACTTTTTATCACTCTACTCTTTAAAAGTCAGCAGGTTAAGGTTAGTATCTAACA # Right flank : TGATTAAATTCAGATTTAATGAGTTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTTTGAGCATGATTTTGAGATAAATACGATGAATTTATTGAAATCGCTGGCTGCGGTCAGTTCTATGACCATGTTTTCCCGGGTTTTGGGCTTTATCCGTGATGCCATTATTGCCCGTATATTTGGCGCAGGTGCAACAACGGATGCCTTTTTTGTTGCATTTAAATTACCTAATCTGTTGCGCCGTATTTTTGCAGAAGGCGCATTTTCTCAGGCATTTGTGCCGATTTTGGCTGAATATAAAAATCAGCAGGGAGACGAAGCGACCCGGACGTTTATTGCCTATGTTTCCGGTATGTTGACGTTAATTCTGGCGGTTGTTACGGTGCTGGGTATTTTAGCTGCACCGTGGGTGATTTATATTACCGCGCCGGGTTTTACCGATACTGCGGATAAATTTGCTCTGACGACAAATCTGTTAAGAATTACGTTTCCTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5032709-5031840 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011104.1 Photorhabdus thracensis strain DSM 15199 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5032708 28 100.0 32 ............................ AACCTGCCTGAGTCGCTAATCCGTCTTTACCC 5032648 28 100.0 33 ............................ CGGAAATCACGAGCAGTCCGGCAATTGGAACCA 5032587 28 100.0 32 ............................ GCATAGGCAGCTTAGAAATATCTTGGTGTCCA 5032527 28 100.0 32 ............................ TTAACCTGATTCCTGATTCCCCTAACCCTATA 5032467 28 100.0 32 ............................ TAGCAATCAATTCAACTCTATCACTGAGTTGT 5032407 28 100.0 32 ............................ TGTGAGATGCCGTTACTGCAACGGAGACGTAA 5032347 28 100.0 32 ............................ AACAAAGCCCCCGAAGGAACATGAATCCATCT 5032287 28 100.0 32 ............................ CAAAATGGCAAGGTTTGCGTGACAGATATTAT 5032227 28 100.0 32 ............................ CGGATAACCAGCACGACCGCCAGTAATTTGAC 5032167 28 100.0 32 ............................ AAATTTGACCCCTTTGTTCCTGGCTTCTAAAC 5032107 28 100.0 31 ............................ CGACGTAACAACGGCGGGTCACAGCGGCGGC 5032048 28 100.0 32 ............................ AAATGGGTTTGCTACTACATTATTCATCTCTG 5031988 28 100.0 33 ............................ CTGTTCGCTTCGCTTTGACGAGTGCAGCCAGTT 5031927 28 100.0 32 ............................ GCTTGCAGTTCTAAAGCATATGCAAGATAACA 5031867 28 75.0 0 ...........T.........AGC.CGC | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGTTGCAGGATTTACAAGCGTTACCTTGGTTAAAAGGGCTCAGGGATTATACGGAGGTGACCGATAGTCAGCCAGTACCTCAAGACACTCAATATCGTTGTGTTAGCCGGGTACAGGTTAAAAGCAACGCAGAGCGGCTTCGTCGTCGTTCGATCAAAAAGAGGTGGTTAACTGAGGAGCAAGCTCGGCAATGCATCCCAATAAGCAAAGAACAACGTACTGATTTACCGTTTCTGAGTCTTAAGAGTTTGTCATCAGGGCAAAGCTTTCCGTTGTTTGTCGAACAGGGACCAATAGAAGACAGACCAACTCCAGGAGTTTTTAGTTCTTATGGATTAAGTGCATCAGCTACCATCCCCTGGTTTTGACCCTTTTTTAGCGGTTAATTATAACCTTTTGATTTATTTAAGAGATTAGCCGCTGCTTCTAAAAAGGGTTTTTTCCGCTTTTTTTAACTATGCTCTTTAATAATCAGTAGGTTAAAGCTAGTATTTAACA # Right flank : CCAGTTGAGCGCGCTAGAAAAAGTTAATTTTGCTTGATATAGGTTATTTCTTATGCTTGTAAGCATATTCTTCACTGTTAACCCATTGATGGTCTTTCTCCCAGGTGAATAGCCACTTGCGGGTTGGTCCCGCCATTACATTGAGATAGTAGTTGTTATAACCAGCAATGGTTGCCACGGGGTGATAGCCTTTGGGAACCATTACCACATCCTTGTTATAAACCGCCATTGATTCATCCAGTGAATAGTCATCGGTATAGACTCGTTGCATACAGAATCCCTGTGATGGATTCAGGCGATGGTAATAGGTTTCCTCCAGATAGGTTTCCTGTGGTTCATTGTCCGTATCGTGTTTATGGCTGGGATAGGAGCTGGTGCAGCCTTCGTCGGTAAAGACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTATCCGGCAGGATATTGTGAACATAGCGTTGGTTGAAGCCGCTCCCACGTTTTTCTGCATCAATATCCTGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 5049979-5048451 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011104.1 Photorhabdus thracensis strain DSM 15199 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5049978 28 100.0 32 ............................ AAAAATGGGCAACAAGAAACCGCTGCTTTATT 5049918 28 100.0 32 ............................ TTTTAATTGCTCGTGTTGTAAGCAACGACTTA 5049858 28 100.0 32 ............................ ATGACCTAAACTCATAGGTGGCATAATGGAAT 5049798 28 100.0 32 ............................ AATGAAGAAACTCTCATTGAAAGATGTCATTG 5049738 28 100.0 32 ............................ CATTACAACGGTCGCAAAGGGCCTCGGCTTTA 5049678 28 100.0 32 ............................ GATATGCCGAATTGAAGTTTATTTCAATTAAC 5049618 28 100.0 32 ............................ TTCAATAACACCCTCTGCCTTTTGTAATTTTT 5049558 28 100.0 32 ............................ ATTTGCCATATATCTGAGAGTGTGCCCCTTCG 5049498 28 100.0 32 ............................ TCCATTATTCATCGTTATTTACTCTCTTATTC 5049438 28 100.0 32 ............................ ACCTTGCGCAGGTTCATAAAATTGCTGACCCA 5049378 28 100.0 32 ............................ TTTGTGCGGCCCGTGAGTCCATACTTGCCTTA 5049318 28 100.0 32 ............................ AAACGGCGCATTGAATTGACCACTTTTGTTAT 5049258 28 100.0 32 ............................ TCGATAACAAATAATTGATTTGCATATCAATG 5049198 28 100.0 32 ............................ AAACACCTCCGTGTGATGGGCTATCTTTACGT 5049138 28 100.0 32 ............................ ACGAAAGCGAGCTATGCGAAAGGAATTAATTT 5049078 28 100.0 32 ............................ TTTACAGATATTCCACTCGGCACATTGGCAGA 5049018 28 100.0 32 ............................ AATTGATACCCATCATCAAGCCTCATGACTGA 5048958 28 100.0 32 ............................ TGACGTGTGGAACTGTAAAGGTCTTAACTTGA 5048898 28 100.0 32 ............................ AGTTCATTTCTTCCAGATCAACTACAGCAATA 5048838 28 100.0 32 ............................ GTGGATAAAAAAGGCCGCTGAACAATGCAGGA 5048778 28 100.0 32 ............................ ACTTCATCACCAAGCATCCCAGTCAAATCAAT 5048718 28 100.0 32 ............................ TCTGCTACAACGGCAACGTGATTGCCGAGGAT 5048658 28 100.0 32 ............................ AAAATTAATGTTGCTGTTCCCATATTTAACTA 5048598 28 100.0 32 ............................ GTCCAATCAGGGCTGACTGGTTAGACTGATCC 5048538 28 100.0 32 ............................ AGAGGAAACATTATGACGAAGCGACTAAGTTT 5048478 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGAGATCATGTTCATATGCTGATTGAGTATCCACCGACCGTTTAGCTATCGGTATGGGTTAACTCGCTGAAAGCAGTCACCTCCCGTCGCTTACGTAATGAGTTTCTGGACTGACGCGGAGCATACGGAAAGGCAGTTCTCTGGTCTCGCTCCTACTTTGCGGGTTCATGCGGTGGAGCACCGCTGGAAGTGGTGAAACAATACATTCAACATCAGCGTGGCTGGTGATTCTACAGGCTTTTCAAGCCTGTCCAAATTCCCCTCCCGCCTGATGTCGGCGGGAGTACCCTTTGGAGGTAAAGATGGCAGGCGGCGCTTAGGTTCCAAATATTGCCATAAGATACCGTATTTCTACGGACCCTAATTTTGACCCTTTTTTATCGATAATCAATAACGTTTTGATTTTAAAGTAAAATAAATTAGCCCTTATAAAAAGGGTTTTTTCACTTTTTATAACTATACTCTTTGATAGTCAGCAGGTTAGAGGTAATATGCAACC # Right flank : TCCAGTAACTGCCTTTCGAGAAATATAATATAGGTTAATTGCGCAGTCGTGGAGCCAGTAACTGATTACGGATGGATTCTGCTAACTCATCTAGGGAAGGTTGTTCTGGATGGTCATCGGATGCTTCATAGGATAATTGCGCTTCGGCTAAATAAGTATGTACAGGCTGGCCGTCGTCATCTTCCATCACAACATGATACCAAGGAGCAGAACGCAAGGCAGCATTGGATGCAATATCATCTTCTTGGGGTTGTTCCAGAGAATATTCCACATCAATATCTACGATAACGCCCAAATAACCCAGAAGCTTGTGACGTACTTGTTGGCCGAGACCGAATTTGCTGGCAATAATCATAGCCACCTCCAAAAAAACCTTGCATTGATACGAATATGAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTAGTTGAAGTCATTTTCTTGCTTTAATAATTGCGAGAGCGACTTCACCTAATTTCAGGTTAGCTGTAGTCAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //