Array 1 128594-127605 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQK01000223.1 Pseudomonas aeruginosa strain 9AR3 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 128593 28 100.0 32 ............................ TGTACGTGGCGCCGACAAAGCCGCTGATTAGC 128533 28 100.0 32 ............................ AGGGCCTTGTGAAGTCCTGCACCCTGCCCCCG 128473 28 100.0 32 ............................ CTGAGAGACCAACGGCAAGCGCTCAAGATCGA 128413 28 100.0 32 ............................ TGGCGCTTCACACGCTCCGGCCAGGTGCTGTC 128353 28 100.0 32 ............................ ACGACGCATGCGTCGTTCCGCCCTCTTTTTCT 128293 28 100.0 32 ............................ GGCAAGAGTTCGCTGCTCGACGCCATCAGCCA 128233 28 100.0 32 ............................ AGGACCTGGCCGCAGGGGTGGTAAGCGCCCTC 128173 28 100.0 32 ............................ ACCCCTCCAGATGACCCGGTTACCGCTTGAAG 128113 28 100.0 32 ............................ TTGATGGTGTTGCGGTGATTGCGCAGACCCTG 128053 28 100.0 32 ............................ TGGTCGGGGCGCTCCTGGCTCTTTGCTTTGGG 127993 28 100.0 33 ............................ TGCAAGGCCTGGAGAATTGCCCGTGCAGTTCGT 127932 28 100.0 32 ............................ ATGAGCACTACCATCCCCGATTCGATTCATCC 127872 28 100.0 32 ............................ CGGTAGCGTTCGCCACGACGATGGCGCCGGCG 127812 28 100.0 32 ............................ TTCACCCCGGCGGCCAGCGCGCTGAACGTGAG 127752 28 100.0 32 ............................ ACGCACGGCGGCTGCGCCGGATTCGAGGTCGA 127692 28 100.0 32 ............................ ATCGCGGTCATGTTGGCCGCATAGGTGCTGGT 127632 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : TTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17362-19549 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQK01000234.1 Pseudomonas aeruginosa strain 9AR3 scaffold32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17362 28 100.0 32 ............................ TTGCGGACGGTGGTCAGGTAGCGGCGGTAGCT 17422 28 100.0 32 ............................ CCTGGCGGTGGATGATTGAAGCTTCGCGGAAG 17482 28 100.0 32 ............................ ATCGGCCGGGTCGTCAACTCGACGGCGACGAA 17542 28 100.0 32 ............................ GCTTGGAAGGGGTCGGTCAAGAGCAACCAGAC 17602 28 100.0 32 ............................ AATTCGGGAAGAGACTCCTTCCCAGTGCCTCT 17662 28 100.0 32 ............................ TCAAGCAACACGCCTCCGCGATGCAACTCACT 17722 28 100.0 32 ............................ AAGGGCCAGGTGCTGGAACTCGACACTCTGGC 17782 28 100.0 32 ............................ TCTCTCGAAGCCATCCTGAGAAATCGTTTTGG 17842 28 100.0 32 ............................ GTGCTGGCTGTGCTGATGCCGTCGGTGTCGGT 17902 28 100.0 32 ............................ GTCAAGGGCCAGGATCACAACGTCGATCCACT 17962 28 100.0 32 ............................ TGGCTGAGGACGCAGCAGCAAAGGGAGATGCT 18022 28 100.0 32 ............................ AGAGACAACCGCCTGAGGCGCGACGTTTCCGT 18082 28 100.0 32 ............................ AAGTGGGCGCCCTTTGAATTTGTCGTTGACCT 18142 28 100.0 32 ............................ TTGACAAACTCGTCTGGCAGTTTCTTTTCGTC 18202 28 100.0 32 ............................ TCTTCTCGTCGTGTCGCGACACGAATACACGC 18262 28 100.0 32 ............................ ATCATCTCCTCGAACAAGGAATGGTCTCACCG 18322 28 100.0 32 ............................ TTCTTCGCCTTGAGCCCCAGGAAGTCGGGAAG 18382 28 100.0 32 ............................ AGCAGGCGTTTCTCGGCAACAAGAAGCGCATC 18442 28 100.0 32 ............................ ACACCTGCTGCTGGGAAACCCATACCCGGCCT 18502 28 100.0 32 ............................ AGTCGAGCACGCCGATCAGGATCGTGACGATC 18562 28 100.0 32 ............................ AATATCAGGAGGCCAAGCTCAACTTGCTGCGC 18622 28 100.0 32 ............................ TGCGCGGGCTGGTCGACAAAGCCGGAATCAGT 18682 28 100.0 32 ............................ CATTCCACTCGGCCGGGATCGGCTGGCCGTTG 18742 28 100.0 32 ............................ ATCCGTCGCTCGGTGTCAGCACTTGCCCCGGC 18802 28 100.0 32 ............................ GGTTCGGTGTCTCGCTCTGCGCGTACATCCTC 18862 28 100.0 33 ............................ TCGATCACCTGACTTGCCACTCGCAACCGCTCT 18923 28 100.0 32 ............................ GGCAGAGATCAGGAATCAAGCAAGGATAGCCC 18983 28 100.0 32 ............................ ATTTGGCCCGGCCCATAGACGCCACCGCGCAG 19043 28 100.0 32 ............................ GCGCCCTGCTGAGCGAGCAGGAGGGAGGGAAG 19103 28 100.0 32 ............................ TTGGATGCGGAATGTGCGGTCAGCCACAGCAC 19163 28 100.0 32 ............................ CAGCAGGAGAACATCGACACCGCCGTGCGGCT 19223 28 100.0 32 ............................ AACGGAACTACCCGCACGGATGCATCGAACGT 19283 28 100.0 32 ............................ GCAGTCTTCACACTCGTGCAGGCTCTCGCCGA 19343 28 100.0 32 ............................ ACCAGGATAGGATCGACCTCGGCGCAGTACGC 19403 28 100.0 32 ............................ AATCGCAGTTCCAATGATCGGAACGACAGATC 19463 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 19522 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29937-28468 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQK01000234.1 Pseudomonas aeruginosa strain 9AR3 scaffold32.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29936 28 100.0 32 ............................ TTGTCGTTCATGCTGGGGTCGTACCAGGCCTG 29876 28 100.0 32 ............................ ACGACGCTCAGCGCGGAGCAGTACCAGGCGCT 29816 28 100.0 32 ............................ AGGAGATGCGTGGCATCCGCGGGCTGGCCAAA 29756 28 100.0 32 ............................ TCCAAGCCGTTTGCGCATCTGCTGGTCATGCA 29696 28 100.0 32 ............................ TCCGCTCGACGACTCCGCCATCGCGGCGCATC 29636 28 100.0 32 ............................ GGTCGGACGTTGCCGATCTGCTGGTAGATCTC 29576 28 100.0 32 ............................ TGGACGCACGCCTCTGCCCTGGACGTGCATCA 29516 28 100.0 32 ............................ CAGAATGCGGCGCCGACCCAACTGTCGGACAT 29456 28 100.0 32 ............................ TAGACGACCTGCTGGCGCTGACGCTGTTGGGC 29396 28 100.0 32 ............................ AACGTCGCCGCATCGCCGTCCGCCCGGGCCTT 29336 28 100.0 32 ............................ TGCGTGGGCAGCCCCTCCTCGATCAGCTTGGA 29276 28 100.0 32 ............................ TTCCCCCCGGCAGGGCATAACCATGACGCTAG 29216 28 100.0 32 ............................ TTATGCCGCAGCCTGTTGCTGCTGGTCGGCGA 29156 28 100.0 32 ............................ TGCAGATCCGCCATTACTCGGACGTCCTCGCC 29096 28 100.0 32 ............................ TGGTCGAAATTCTGGTACCTCGCCTGAAGCTG 29036 28 100.0 32 ............................ TGGCGGTGATCGATGACCCTGCCACCATCCGA 28976 28 100.0 32 ............................ TGATAGATCTTCGTGCGTCGCCACTTCTGAAC 28916 28 100.0 32 ............................ TACCTCCTTGCCGGGCGCGGCGGCGAGTATGG 28856 28 100.0 32 ............................ ATCACTGGTAACAGCTAAAGAACGTTGTCTAA 28796 28 100.0 32 ............................ AGCAGCGGCTCCAGAAAGAGGGGCGCTGCCTG 28736 28 100.0 32 ............................ AGGCTCAGCACAGCGTGCCGGAGGGGCTGGCC 28676 28 100.0 32 ............................ AGGGGGGGGTCGGCAGGCAGACTCACCAGCAG 28616 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAAGCT 28555 28 100.0 32 ............................ TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 28495 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //