Array 1 89760-90191 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCM01000007.1 Streptococcus mutans strain UAB-1 NODE_7_length_123966_cov_22.4637, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 89760 36 100.0 30 .................................... TGCCAGATTGCCACTATATGTTGCTTCATT 89826 36 100.0 30 .................................... AATTACACACTAGATAAAGACTTTACCGTT 89892 36 100.0 30 .................................... TACATGTACTAGAGTATCATCAACCAACAT 89958 36 100.0 30 .................................... GCATTGCTATCCCAATTATTTTGAACAGTT 90024 36 100.0 30 .................................... CAAAAACAGTAGAAGAAGTTTATGAAGCGT 90090 36 100.0 30 .................................... ATAGACATCTTTAAATCTATGTAACGCTGA 90156 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGTTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAAGCGCTAGAAAGATTGATTTCTAGCGCTTTTTTAGGTATAATATAATTAATTAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : CAATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 3582-1555 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCM01000016.1 Streptococcus mutans strain UAB-1 NODE_16_length_23712_cov_25.5346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3581 32 100.0 34 ................................ TCCTTTCTATCCTAATGTTGTTGGATCAACTGGC 3515 32 100.0 33 ................................ AAATTTGTTGCTAAAAAGCGTCTCTGGCCTCAA 3450 32 100.0 34 ................................ TTTGATGATGATGAATTAGCAAGCCAAGTGAATT 3384 32 100.0 35 ................................ AAACCAGAAGTAATTAGTATGATTATCAGCGCTTT 3317 32 100.0 35 ................................ AATTTGAAATGTCTATCCAATCTGAAGATTTATCA 3250 32 100.0 35 ................................ TTGATAACGATAGCGTTGAAAACGCTATGTTGATC 3183 32 100.0 34 ................................ AATTCTGTAATAAGATTGCCTTTGCTAGTCTAAC 3117 32 100.0 34 ................................ TTTAGTGCTTGGGGTGATTTGTCTTCTTATGAAA 3051 32 100.0 35 ................................ AAAACTTCCTAGACGAGACACAAGTACAACTGAAG 2984 32 100.0 35 ................................ AACATATATTAAACGTATTAATGAACTAGTCAAAA 2917 32 100.0 34 ................................ TATCTTTCCAGATAAGAATATTTTGGGAAATGTC 2851 32 100.0 34 ................................ AACAAAAAGAAGCGTTTAAAAAATTTCAAAAGCT 2785 32 100.0 34 ................................ GAGGTTTTGAGAACCCGTAATTGTGTAACAGTCT 2719 32 100.0 34 ................................ AGTTAGTGGATTAACAGCACCACAAGCGGAATTA 2653 32 100.0 34 ................................ GATAGATAATCGGCGCGTGTATATTGGTGTTGAC 2587 32 100.0 34 ................................ TAAAGGCTCGGCAGCTCCAATTCCAGCTCTCTCA 2521 32 100.0 34 ................................ AATTATTTGGTCATAAATTTCTTTTTCTGCTTCA 2455 32 100.0 38 ................................ TAACTAAGAATTTTAAAAGGTGTCATAGGGTGAAATAG 2385 32 100.0 34 ................................ TAACTGCAACTTATTAATATCCATCACGTTACGA 2319 32 100.0 36 ................................ CACCACTAACGACATAACCGCCTTTACCATCACTAA 2251 32 100.0 34 ................................ AATTGGTATGCGTTTGATGTTATAAACTGGACTA 2185 32 100.0 34 ................................ AGTCAAGTAACCGCAAGCGCAAAGACTGCTGAAG 2119 32 100.0 36 ................................ TATAAAATTTTGGAAAGAAAAAGGTGGCGTGTTATC 2051 32 100.0 33 ................................ TGTTCCAGGTTGCTTCAAAATCTTTTTGAATAC 1986 32 100.0 34 ................................ AATTTGAAATGTCTATCCAATCTGAAGATTTATC 1920 32 100.0 34 ................................ TTTTAAAGCACTTCTTTCTTTTCCCTCAGCTGTC 1854 32 100.0 35 ................................ TAAACCTTGCCAACTCTTCTTTAGATAATCAACAA 1787 32 100.0 35 ................................ ACGACATCAAGGCGGAGATGTCATTTCACTTGTTG 1720 32 100.0 35 ................................ CACTATGGTCTAGAACATGGTATTCCTTCAGTAGC 1653 32 96.9 35 ....T........................... TTTCAACTCTGTATCAAATCCAAAAAGCATAGTTG 1586 32 96.9 0 ...............A................ | ========== ====== ====== ====== ================================ ====================================== ================== 31 32 99.8 35 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAAGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAAAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGGTACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TGAAATCAATCGCATAGTATATGAAATGAGTTTTGTCGCACCCTTTAAAGGTTGGGTTTGCTTTTTGGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //