Array 1 1494053-1499428 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043929.1 Methylomonas rhizoryzae strain GJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1494053 28 100.0 33 ............................ CGTGAAAATGCGCCAAAAACGCTCGCAACCAAT 1494114 28 100.0 32 ............................ ACAAGCCGGACACGATATCGTCCTGAACGAAT 1494174 28 100.0 32 ............................ ATGCCGCGGGCGCTGGTTCTAAAGTGTTCGCC 1494234 28 100.0 32 ............................ GTTGATATCGCCTTGCAAGCTAGCGTCCACGT 1494294 28 100.0 32 ............................ AATGCCTTGTACGACGCGCTGAATGCCGCGGC 1494354 28 100.0 33 ............................ GTCGGCGTAGGCTTGGGCTTTTTTACCGACACC 1494415 28 100.0 32 ............................ GCATGACGCCGCTATGGGAACAATCATTCCCA 1494475 28 100.0 32 ............................ GATTATGCCAATGCCGCAAGTCGGCGATTCTA 1494535 28 100.0 32 ............................ GTGCCACGCCTTCGGCGTCGCAATGGTTCTTT 1494595 28 100.0 33 ............................ CAAGATGGTTCTAAAGATGTTCGCACAGTTGTC 1494656 28 100.0 32 ............................ ACAATAGCGATGTGCGGTTTAGCTCGCATTTA 1494716 28 100.0 32 ............................ ATTTCGAGCGACAGCGCGCTTAACAGCCGAAT 1494776 28 100.0 32 ............................ ATGTCCGCGGCAATATAGTTTGGAATATGTCC 1494836 28 100.0 32 ............................ TATACGAGATCAATTACAGATGGCTATCTCCG 1494896 28 100.0 32 ............................ AAACCGCCGCCTATAATTACAGGGTTATTTAA 1494956 28 100.0 32 ............................ AAGAAGCCGATTTTATCAGCGGTATAGTCGGA 1495016 28 100.0 33 ............................ GACAAACTCCACAGAGTTACCAAAATCCGTGGT 1495077 28 100.0 32 ............................ ACAACGATATTGCCGTTTGATAATTAGCGATT 1495137 28 100.0 32 ............................ TACAGAGCAGCACAACACGCCGGGCGGATTCG 1495197 28 100.0 32 ............................ GACGGCAAAGCCACCATAAAAGACGCGTTATC 1495257 28 100.0 32 ............................ TTACCAACAGAAACGGCTTCGTTCAATCATGT 1495317 28 100.0 32 ............................ TATGTGGTGCCGGAAAGCGATAATCCAGGGCC 1495377 28 100.0 32 ............................ CACATATTGCTGAAGTTACTAATGACTTCATT 1495437 28 100.0 32 ............................ TGCAAAATTGAATAGGAAAAATTGATTAAATT 1495497 28 100.0 32 ............................ GACCGGTAATATTATTGTCAACAACGCTGCGA 1495557 28 100.0 32 ............................ ACATGTTGTTTTCAATGTCGCTGCCGGCAATG 1495617 28 100.0 32 ............................ GCCAGCCCGAATTGCGCCCACGAATCAACATG 1495677 28 100.0 32 ............................ GTCCATGGTTTTTTCCTGTTTTTTATTTAGTC 1495737 28 100.0 32 ............................ AAATTGTTAGCCGGTTTGGCGCCAATGTCGAA 1495797 28 100.0 32 ............................ GGCACACGCGGCCGCAAAGGTTTGATGACACC 1495857 28 100.0 32 ............................ GATTGACTCAAGCAACTAATTCGTCGAATCAA 1495917 28 100.0 32 ............................ GTCCGAAATTAAAATAGTACCGGCTTTTACCA 1495977 28 100.0 32 ............................ AGTTATCTAACGCGTCGGGTGAACTCAAGTCT 1496037 28 100.0 32 ............................ GGCTAATATAACCGGATATTGCATAGCGTGCG 1496097 28 100.0 32 ............................ AAACCGATAAGCGCGATGCCCATAATCCCGCT 1496157 28 100.0 32 ............................ TTTGCCGTCGACTATGCCACACCGGTCGGCGA 1496217 28 100.0 32 ............................ GGTACCTCGACCGGCTACAGCAGCATCGCTCG 1496277 28 100.0 32 ............................ TAGCCGGCGCGCAAAATATGGTATACACGCTT 1496337 28 100.0 32 ............................ GTTGCGAGTTATCAGCCACGGCCGTGGTGGCC 1496397 28 100.0 32 ............................ GCCATCGGCCAGAACACCGGCATGGAGCAGGC 1496457 28 100.0 34 ............................ CAGCCGCCATTTGTGCTTCAGCCATAATTACCCC 1496519 28 100.0 32 ............................ GATAACTGCCTGCTCAACAGTATTTCTCATAG 1496579 28 100.0 32 ............................ TTAAAATGCAATTTTAATGGATTAGCTAAACC 1496639 28 100.0 32 ............................ TATCATGAAATAAGCTATTAGACAATTGATTC 1496699 28 100.0 33 ............................ GCATAGAATCACATATAAAGATATAGATTATCT 1496760 28 100.0 33 ............................ ACCGCCGGCGGCGCCGGCTCGATTGGATCCGCC 1496821 28 100.0 32 ............................ CGTATTGATCGTAATACCGGCAACGCCGGCTA 1496881 28 100.0 32 ............................ TATAATTAGGAGCCGCTAATAATTCAGCCATA 1496941 28 100.0 32 ............................ TAACAAGTGCTGATCTAGCAGGTGCTGATCTA 1497001 28 100.0 32 ............................ GACGTGTCCGCTAACTGTCGGCACGCACGATG 1497061 28 100.0 32 ............................ AACCACGTGCGCAAAATATCATTGCGATAAGC 1497121 28 100.0 32 ............................ ATTTTACAAACCAACTCATAAAAATCATCCAA 1497181 28 100.0 32 ............................ AACCCCACAGATTAGATTACTTAGCCAAAAAT 1497241 28 100.0 32 ............................ AGTTGATCGGACCAAGACCGGCAGAAGGGAGT 1497301 28 100.0 32 ............................ ATTTTTTGGCTACAGAGAAGAGAAAACAGGCG 1497361 28 100.0 32 ............................ TTCCGGCCACAGCCATGCGTATGTCGTCCTTT 1497421 28 100.0 32 ............................ ATTGTCAAATCCAGCCAAGGCAAACCAAATTG 1497481 28 100.0 32 ............................ TGTGACCAATCTAGCTATTTTTTCAGATAACA 1497541 28 100.0 32 ............................ GTCGCGCGCAACTTTTTGAAGCATTAAAATTG 1497601 28 100.0 32 ............................ AGCAGGTCGGCACACCGTCATTATTGAATCGT 1497661 28 100.0 32 ............................ TTTAACAGCCGGCATCGGAATATTGTCCTCAA 1497721 28 100.0 32 ............................ AAAAGTTTGACTTAGGGCTTTCTCAAGTGAAG 1497781 28 100.0 32 ............................ AAAGAGAGCGTGCCGCGCAGTAAGGCGCATCC 1497841 28 100.0 32 ............................ GATGCAATCGACCGAGTTACTGATCGGCGATG 1497901 28 100.0 32 ............................ ATTACCAAGGCGAATCCAGGCGTCATCAGTTC 1497961 28 100.0 32 ............................ AAATAATTGAGCGAATCACCGGCGCTCAGATA 1498021 28 100.0 32 ............................ ATTGGTGGCGACGGTAGCGCGTATAGTAATTT 1498081 28 100.0 32 ............................ TTAACCGTGTGCTCAACCACGTCGGACAGCTC 1498141 28 100.0 32 ............................ GATAAACGCATTCGGCAGCGATAGGCGATTTC 1498201 28 100.0 32 ............................ ACTTACTGGAAAGTTTTTACGGCCGGCTCAAT 1498261 28 100.0 32 ............................ ATTACCCGATGAGCTTGTGGAATCCGGCGTTG 1498321 28 100.0 32 ............................ GTGAGCGAACACACTACCCGCAATGTCATAAC 1498381 28 100.0 32 ............................ TTGGTGATCTATTGGAACGACGGCACGGCTCG 1498441 28 100.0 32 ............................ TTAAGCCGGTGTGTGGTGCCAGAGCTGCAACC 1498501 28 100.0 32 ............................ TGGATGTCGTCGTACACGTCGCAGGCCAGATA 1498561 28 100.0 32 ............................ AAGCGGCTCATTCAAAAAAGTCATGATTAATT 1498621 28 100.0 32 ............................ TTTTTCTTCCGCCGCTAGAATTTCTAGCGCTA 1498681 28 100.0 32 ............................ AGGCTAACGCTAGTCGATTGGCTCATAGATTA 1498741 28 100.0 32 ............................ AAGCGGCTCATTCAAAAAAGTCATGATTAATT 1498801 28 100.0 32 ............................ TTTTTCTTCCGCCGCTAGAATTTCTAGCGCTA 1498861 28 100.0 32 ............................ AGGCTAACGCTAGTCGATTGGCTCATAGATTA 1498921 28 100.0 32 ............................ AAATGAACCCATGGCGTTTGTGGCCGTACCGG 1498981 28 100.0 32 ............................ TCCTGCCGCACCTCTACCGTGCGGGCGTTATA 1499041 28 100.0 32 ............................ TATAGAGCAGCACAACACGCCGGGCGGATTCG 1499101 28 100.0 32 ............................ AGTAGTGTACGAATGTCGGCAGCCAAAGCATT 1499161 28 100.0 32 ............................ AAGGCCGACGTGCATCCGGACGAAGTGTCGAA 1499221 28 100.0 32 ............................ TGGTTTCCACAATACTACAACGGTCCAAGATG 1499281 28 100.0 32 ............................ ACCTGCGCCCGGTAAGATACCGAGCCGTCTGC 1499341 28 100.0 32 ............................ AATCTCGGCACGACAAATGGGGCAAAATACTC 1499401 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 90 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : CATTGCACCGGCATCCGGGCGGTGCCGGACAAGCTGCTCGGGTATGCGGTTTACCGGCGGGTGCAGCCCAAGACCAATCCCGAGCGGCTGGCACGGCGCTACGCCAAGCGCCACGGCCTGGATTTGGCGACCGCGCTGAACATGACGGTGGAACTGCGAGAGGCGGGCGAGAACCCCGCGTACCCGCTGTCATTTCGCTATTGCGACATGCTCAAGCCCTCCGTGCCGTGGCCGTTCATTCGCTTGCAAAGCTTGAGCGGCGGCCAGACGTTTTGTTTGTGGATCGCCAAAACCGAGGTCGTCGCGCCGGTGGCCGGCGGTTTCAGCGCCTACGGCCTGAGCAGTGTTGCGACCGTACCGGAATTTTGACCAAATTTTTTGCGCTCTTTAACAATGTGAACTAAATCAGCCGGTTACGGCTAAGGGTTTTGCGGATGGTGAAAATAGGTCAAATCGCCCGCAACCCTTGTCGCAACCGGCTTCCCGTTTATTTATAATCA # Right flank : AAGCGAGTTGCAGAAGCGTTTATCGACGCTTGTCTGTGGCACACACCAAGCTATGTGCCAGCCGAGCGTTTTTGTTGGTCGGCCTATCCGCACCAAAGCTATGCCTGGCGCTGTTTGCGCGTTACGGGAAATAGTCCGCGGCTAGGAAGCTTGAGGCTGCTTGATCCTTGCCGGATAAGGCCGGTGCATAATCGATCGGCCATTCGATGCCGATGACGGGATCGTTCCAGGCTATGGCCCGTTCATTTTCCGGGCTGTAATAATCGGTGGTCTTGTACAAAAACTCCGCGCTGTCGGATAGAGTGACGAATCCGTGGGCGAAACCGGGTGGAATCCACAGTTGATTTTTGTTGTCCGCCGATAGCAGTGCACCCACCCATTGGCCGAATGTGGGCGAACTTTTGCGTATGTCGACCGCCACGTCGAATACTTGGCCGGCTACCACCCTGACCAGTTTGCCTTGGGCCTTGGGCGGCAGTTGATAATGCAGGCCGCGCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1614418-1611787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043929.1 Methylomonas rhizoryzae strain GJ1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1614417 37 100.0 33 ..................................... GAGTTATTAGCATATAAGTCGTAAACACCCATT 1614347 37 100.0 32 ..................................... ATTTTTTTCATGTCGTTCTCCTCAGTATCCCA 1614278 37 100.0 34 ..................................... CTAGTTGTTCTTGCATCTCTTGCGAGACTGGCAA 1614207 37 100.0 36 ..................................... CGCTATTCAGGGCCTTAATTATCCACTCTGTTAGTT 1614134 37 100.0 36 ..................................... TTGCGCGAATGATGCTTTTACTGTGTTGGTGGATGG 1614061 37 100.0 35 ..................................... TAATTGACTCTAAAGAGTCACGGTTAAAAGTATTC 1613989 37 100.0 35 ..................................... ACGTATTGTTCTGCATTATTTCCGCCGAACATTGT 1613917 37 100.0 35 ..................................... CCGCGCTGGGTGTAATATCAGCCGCAAACTCTGCG 1613845 37 100.0 35 ..................................... TTTTAAATAGATGCCACTCATAGGCACTAATGCGG 1613773 37 100.0 33 ..................................... GTAATATCGACTGCATAGTGCGCGAAAACACCG 1613703 37 100.0 34 ..................................... AATTTTGCGATAACCGTATCAGTCAACTCGAACT 1613632 37 100.0 30 ..................................... TGTCTACTAGGTCCGGCAAAGCGAGAAAAG 1613565 37 100.0 30 ..................................... TGTGCAGCACTAGCGCCCGCATGTCGAATC 1613498 37 100.0 32 ..................................... GCAATAATACCCAGAATGGCGTCCATAATTTT 1613429 37 97.3 36 ..........................A.......... TCAAGGTTTTGACCTTGAATGCTTGAACTTTGTAGC 1613356 37 100.0 34 ..................................... GTTAGCGACGTACTCATAATGGCCGTTCTCTAGA 1613285 37 100.0 34 ..................................... TGCCCCTGAAGAACTCATTTCTTTTTTGATAGAT 1613214 37 100.0 32 ..................................... ATTATTGCCCGGCGGTTTGAATCCGATTGCAG 1613145 37 100.0 33 ..................................... TGAGCAAAAGTGTAGTTAGCTGCACTCATATGA 1613075 37 97.3 32 ............................A........ ACGCCGTGGCCGTGGATTTTTGCGATGGTGGT 1613006 37 100.0 30 ..................................... TAGTTTGGGAATTTATACCGTGTTTTTGGG 1612939 37 100.0 32 ..................................... GTGTTCTGGAAGAGCTATTGCTGTTAATGTAT 1612870 37 100.0 34 ..................................... CCCTGGTTGCTGGTCGTAGTCTAAATACGGTGGA 1612799 37 100.0 32 ..................................... AGGCACTCGCCTCGTCGATTTTTGTACGTATC 1612730 37 100.0 33 ..................................... CAACGCGAGCGTTAATCCGAGTGTCTGTGTAAC 1612660 37 100.0 34 ..................................... CGTGGTTGTTAATCAATGTGTCACCCGGAACAAA 1612589 37 100.0 34 ..................................... CGTCGGGAGTGGCTACCGTGTCGCGTTATGTGAC 1612518 37 100.0 34 ..................................... GTCTCTCATCTTTCGTGCAGTTTCTAAAATCTCA 1612447 37 100.0 32 ..................................... ATCGAATAAATCATCAGGGCAATTAACCGCGG 1612378 37 100.0 33 ..................................... GTAGTCCGACGACTTGACGCTCGTGCCCCAAAC 1612308 37 100.0 29 ..................................... AGGTCAGCTGCAGACCTGGAGTTTGGCAC 1612242 37 100.0 32 ..................................... ACAACGGTGCTACGCAGTCCATGGTGTTGTTT 1612173 37 100.0 33 ..................................... TTTTGATTGAATTAAAAATCCGGCTAGGTCGTA 1612103 37 100.0 32 ..................................... GCATTTTTGGCAGCAATTTCAGCGGCTTGACG 1612034 37 100.0 33 ..................................... GCGTTAACTCAAAAGACATCGACTTAACGTATT 1611964 37 100.0 34 ..................................... TCGACACCGCAGACTTACCGTTAAGGCCGAGCAT 1611893 37 100.0 33 ..................................... AAGGCATTTCGTTAATTGTTGGTTCACAGCGCC 1611823 37 94.6 0 ................C...................T | ========== ====== ====== ====== ===================================== ==================================== ================== 38 37 99.7 33 ATTTAAATAACAGACCTTATAAAGAAGGGATTAAGAC # Left flank : CGATGCCGACGCCCGTTTCATGACCAACGGCGGTTGGCTGGAGCTACATACCTACGGGATTTGTTTGAATCTGAAAAAAACGTTGAATATTCAGGATATCGCCTGCAACGTCACTATTCAACGCCAACCCGCCGGAAAAACCCCGGTTAAAAATGAGATCGACGTGGGTTTGATCAGGGCCAACCGCCTGCACTTGATCGAATGCAAAACCAAGCAATTTGAAAAGAACGCCGACGTCTTGTATAAACTCGACAGCCTGCGCGACTTGATCGGTGGCCTGCAAGCCAAAGCCATGTTGGTTAGTTTTAACGACCCCGGCAAAGCCACGCGCGCCCGCGCCAGGGACCTGAAAATCGCACTCTGCTGCAAAACCGACCTGAGAAATTTACAACATCACCTGCATGACTGGCTGACAGCCCATAGATAACAGTAGAAAAATGAAAAATCTTGGCAACCCCATTTCCAACCCATTGAAACCAAAAGGAGAATACCATCAAGCG # Right flank : GGAAAAAGCTGTCGTAGGAGCGACGCGTCGTCGCGATTGAAACCCTGCAAATCGCGACTGGCGTCGCCCCTACCTCAATCCTCGCAAGCTTGCCAATGCCGGCCGACGGCTCGGTTCCGGGTATATTGCGGCCATGACTCAACGGCATCTCTATCTGGCGGCTTACGACATTTCCTGCAACCGGCGCCTGCGCAAGGCGCTGTATGTCTTGCGCGCTTATGCGTCGGGCGGACAAAAGTCGGTGTTCGAGTGCTTTTTGACCGATGCGGAAAAGCGCCAACTGCTGGAAGAGATAGCCTTCGTCATAAACCCTGAAGAAGACCGCTTTATCGTGTTGCGCCTGGCGGGCGCCAAACACGTGCGCACCTTGGGCAAGGCGGTTCCGCCTCAGGATGGATCGTTTTATTACGTGGGGTAATGGATGAGCAGTTTGTATCTGGATCGCAAGAATCTGGGCATCAAGTTGGATGGTCAGGCGTTGGCTTTGTATGAGGATGGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATAACAGACCTTATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 2598030-2600098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043929.1 Methylomonas rhizoryzae strain GJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2598030 36 100.0 35 .................................... TTATTGGCAAAGAGATACGAGTCATCGATTACTAC 2598101 36 100.0 38 .................................... ATGATTTCGCTAACGCCTGTGATTGAGCTGCTAACCCG 2598175 36 100.0 37 .................................... AAGATTAGCGGCGATTGAATTTCGCTTACAATCTATC 2598248 36 100.0 36 .................................... GAGGGAATACAAGAACGGCACTTCTCGGATAGTCAG 2598320 36 100.0 36 .................................... ACACCGAGCCACCCTACTTAGCCCCGAGAACTCAAT 2598392 36 100.0 35 .................................... GGCTAAATCCGGCCTGCTATGTATTCTGATGACCT 2598463 36 100.0 36 .................................... ACCGACGGTTCGGTCGCGCCGTTTATTCGCCAGGAA 2598535 36 100.0 36 .................................... GATTGACTGCCAATATTCGCAAACCCTGAGCGGGCT 2598607 36 100.0 37 .................................... GACACCGACAAAATCAACTGAATAACGCGGTTGACGT 2598680 36 100.0 37 .................................... CGCCGCAAAAAACGCAAACATGGCCGATAAGGACTTA 2598753 36 100.0 35 .................................... TATTTCGGACGGGAACGGGGCAAATTATCCGATGA 2598824 36 100.0 37 .................................... TTGTGGCGATGGGTTTCGTAACTACCCACCACATCCG 2598897 36 100.0 38 .................................... TGCCGCAGGTAACGGATGGGGTGAAATTACGAGGTGTA 2598971 36 100.0 35 .................................... ATGGCGGCTCGCAGGTAGCGCAGCACGTAGGCGGA 2599042 36 100.0 37 .................................... GACTGTTTAAAGCCCGTAGCTGTGATGATGTGGCACG 2599115 36 100.0 38 .................................... TAGACTTTATCAGATTTACCTTTCACGACCTAAAGCGC 2599189 36 100.0 36 .................................... TTTGATTAACGCTGTATGTCCACGATCAACCGGCTT 2599261 36 100.0 38 .................................... ACCTGGGCCAGTCAACTCACCGGCCTGGTCGGCAGCAT 2599335 36 100.0 37 .................................... TCACCTGCAGCGCCCGCCGATGACTGACGCCGCTGTT 2599408 36 100.0 36 .................................... ATCGAAAGCCGCGGGCAAATGGTGGTGGATGTACCT 2599480 36 100.0 38 .................................... AAGTATTCCAGTCGTTCAAAGCCGTGCTGGAAATGAAA 2599554 36 100.0 37 .................................... ACCGAGCGAGCACCGTGCGGGCGTGGGTGATAAAGTG 2599627 36 100.0 36 .................................... AGAAGTTGGTGAAAAAATTTTCAAGCACAACCCTGA 2599699 36 100.0 37 .................................... AATCAACGCCCGGCTGCAGCAGCTGGAAATCCTGATC 2599772 36 100.0 35 .................................... ATGACTTGCGCGGCGCGATTTTGTCGCAAACCAAT 2599843 36 100.0 39 .................................... TTGGTTGCTCTGGTAATGGCATCCAATGTGTTGGCGGTA 2599918 36 100.0 36 .................................... GTGGAGTGCGACCTCGCCGTCTTGCAGCTCCAGCTG 2599990 36 100.0 37 .................................... GAATGAAGGCGATAAAGCGCTGCCAGCGCTCGGTTAA 2600063 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 29 36 100.0 37 GCTTCAATGAGGCCCCGGCTGGTGGCCGGGGAAGGC # Left flank : CGCACCGCACGCACCGTGTCTCGCAATAAATCGATTTCCCGGATCAACAAATCGTTATTCTTTCTCGCCAACAAATTCACCGTAAAAAACCATGTGCCACCCAGAATAAAAGCGCGTCGGTAATTGGGCATGGTTTTTTAGTGTTTTAAGAGTTTGAGTGTTTGTTAGGTTTAAACATTCGTCCGATTACGCTTCGCTAATCGTACCTACGGTCCTTTTTAGCATCCTCGATATTTAAGGTTTCGCTGTCGTCGGCATTTATTAATTGCACCAGAGCATAATTTTCCAAAACATTTTCAATCTTTTCGAAGGTGTCAATATCCAGTTGTACCGCGACTCTCTGGCTGTCTTCGTTAACGATATATTGCCTTTTAAATTCCATAACCGTCTCCCGGGAAAGGTGAGTGGTCACGATACCTATCCACTAGCGAAAAATCAAACCGGCGGGTGGCCGGGGAAGGCTTCAGGTTGTCGGTGAAGCCGGCCGCGTCGAGACTCAT # Right flank : CAGCGCGGGCTGTACGCCTTAGATGGCGTGGCCTGCAGGGGGCGTTTGCGAGGGCTGTGCCCAACCGCTGATCAAATCTAGCGGAAATGTCTGTAAAGCGCCAACAGAAGTTTCCAAGTTGCTGATTGTTAAAGAGCTGACGGGTTGCGAGACCTGCCCGGCTATTGAGCGGCACCGCAGCGCTCGCGCTATCGCGGCGAACGGTCGTAATCTTGATTTGACGACCATTGTGGCAGAGATCCATTCCCGCGAATAGCGTTGGCCTCCAGTCAGCATATTGCGACCGTTTTATGTTCATCGGCCTGACTGCTTGCCGTTCCAATTGACCATATCGGAATCGAAATCATCGATACATAGACGGTTTATCCGTTTACAATCGACGGGTGGCGATAGGAGACGGGGCGACTGTACGCCAGACCCAACCAAAACCACCGGCCGGTTTTTACAGGTTGAACCGGCCTCACTTCGACTAACGGATGACCGATGTGCCACTCGTCCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCTGGTGGCCGGGGAAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 2910466-2909417 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043929.1 Methylomonas rhizoryzae strain GJ1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2910465 28 100.0 32 ............................ TGAACGAATTTTATGCTGTGGATGTCGGCGAA 2910405 28 100.0 32 ............................ GTGCTGTGGCTGGTCAACTACATCGCGGTCAC 2910345 28 100.0 32 ............................ TTGGGCTGCGGCCGCGGTTTCCGCTTGTTCGG 2910285 28 100.0 32 ............................ AACTAAAACAACCGATCAAAATCGGCGACGAA 2910225 28 100.0 32 ............................ GCTATTCGTTTTCTGCCGAGTTCGACATCACC 2910165 28 100.0 32 ............................ TTTGGCGGCGCTGGCGGACAAGGCGCTGAAAG 2910105 28 100.0 32 ............................ AACATTCGATTGTGCCGTCACCGGCGCCAAAA 2910045 28 100.0 32 ............................ GGTTACGATTACCCGAGCGCTGCCGTCGCCGC 2909985 28 100.0 32 ............................ TCTCTAAAACCGCTGGCCTGGTCAACGACAAC 2909925 28 100.0 32 ............................ TCTCTAAAACCGCTGGCCTGGTCAACGACAAC 2909865 28 100.0 32 ............................ CAAGGCAAGTTGCAGGAATTGGCGGATGCGCG 2909805 28 100.0 32 ............................ ATGGCAAGCCAAATTGTTCCGCTTGTCGCGAA 2909745 28 100.0 32 ............................ AAAAACGACAGAATGACCGAGGTATCGGTGAA 2909685 28 100.0 32 ............................ TTTTCACGCTCTTGCTTCAGCACATCATACGG 2909625 28 100.0 32 ............................ TAAACTCGGATACGTGTTGCTTGATTCGCGTG 2909565 28 96.4 32 ...............A............ TATGGTTGAAAAAATGTTTACGGCTTATCTGG 2909505 28 96.4 33 .............T.............. ATCACGTAGCCGCTGACGATACCGGCCTCCTCC 2909444 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : GGAATGGAATCTCGACCGCGACGAGCGTAGAGCGCGTCGAACTCGTCGTTTAGCGTGGCGAGCAACAAGTCGACCACTTGACGCAGCTTGCGTAGCGGATGCTTTTTGGGAATCCGGCTTTCCAGGGTTCGGTAACTGAACAGGTCTTCTTGAGTAATGTCGGCGCCGCGCATGGGGACAGTGCAATATATTGGAGATAGAACTATTTTATCATTTAGAACAATACTTTATGATTTGCCAACACATCTGACTCAACCAGCCAATGCGGGTTACAGGGGAGATAAAATCAACAGCCTGTTAGGGTTATCGTTTTTAGCGCAACCGTACCTAGCGGGTGGCGTAGCCTCGCCGCCGAGCCTGAATTTTGCACCCAAAAAAATTTTCGCTTTAACGGTGCGAATAAAATCCACTAGTTATGGGTAAGTGGTTTACGGATGGTAAAAATACCCAAAACAACCTGCAGCCTTTGTCGCAACCGGCTTCCCGTTTATTTATAATCA # Right flank : ATTACCCGAGCAAACGTGGTTTGAAATGTTTCCGGCAAAATCCGCGCCGCTGGCTTTGTAACGAATGTGCGAGTCGTTTAGGGCAATCTCAAAAGATAACCTATGCTCTATCGTCGACAACCATCATCTTACGGAGACCGCTTTTATGACCATAACGACTTTCCATCAAGACCGCGATGCCGGCGTCGCCGGCGATTTTCAACACGCGTTAGAAGGCAAAGTGCTGCAGGGCCTTGGCTTGGCGATCGAGAATGCCGTTACCGCCCAAAGCCAACTTTATCTGGTAGGGCAGGCGGCGTTTACCCAAGCGATACAAATGCGACTGAGTCGCCCGGTAACATCGTCGCCAGCCGAGGTGTGCGACACCGCGGCAGCCACCAGCACCGACGAATTGGCGGCGCAGTTGCAGACCATCGCAAATGCGGGTCTGGGGGCGCTGGACAATTCGCTTGCCGCAGGCGATTCGGCCGAATCCGCGACTCGGCTGATGACGGCGTTCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //