Array 1 28-392 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969262.1 Streptococcus lutetiensis strain DD06 scaffold00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28 36 100.0 30 .................................... AAAAAGGAATGGAAAAGTTATTTTCAAAAG 94 36 100.0 30 .................................... TTGTTCAATTGCTTCAAGAACAAATGCTGT 160 36 100.0 30 .................................... TTTTAAATTTGTGATAAATCCGTATTCCTG 226 36 100.0 30 .................................... ATAAACAAGATTACCTGCCACAAAGTTTCT 292 36 100.0 29 .................................... TTTTAGGTTTGTTTAGATACAGAACTGAA 357 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CCACGTTTCAACGGTTTCTGGTGTTTCG # Right flank : TTTTAGGTTTGTTTAGATACAGAACTGAAGTTTTAGAGCTGTGCTGTTTCGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 753853-752894 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969241.1 Streptococcus lutetiensis strain DD06 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 753852 36 100.0 30 .................................... AAGTCACGAAAGAAAAGCACTATTCTAACC 753786 36 100.0 29 .................................... CAATAGTAAAATAGTCTTCACTATTTTGT 753721 36 100.0 30 .................................... AATAAAGGAGTATTATGGATTTTTTAACTA 753655 36 100.0 30 .................................... AACGGCTTGACAAATGATTATAAGAAAGAT 753589 36 100.0 30 .................................... CAGTAGATAAATAACCTGAATGATTGTACG 753523 36 100.0 30 .................................... GTCGCTTGTTTTTTTCCATTTTTGTCAATA 753457 36 100.0 30 .................................... TAAGCTGACGCACCGATTCAGTGCATCAGG 753391 36 100.0 30 .................................... CTCTAATACCAAAATGACACGAGTCGTCAA 753325 36 100.0 30 .................................... TTTCCCCTACACGTTTATATTTTATTTTCT 753259 36 100.0 30 .................................... TTCGTCTAAATCAAAATCAACGTCCAACTT 753193 36 100.0 30 .................................... CAGATCTAGAATTTGATAAAAACATACACG 753127 36 100.0 30 .................................... AAAACAGAAATGCAAAAACGAAAGGAAGCG 753061 36 100.0 30 .................................... AAACATCACAATCCGAGAGGTTCGGGCACG 752995 36 100.0 30 .................................... AATTTGTTAACGACTTCAAAAACTTGGTCT 752929 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGATTACCTTGATTATGCCTCATTTATAAGAATTTGTCAGGTTATCACAAGAATGGCTGATGAGTTTCCAAATTTTTATTGTACGATTTTTCCATCAAACGAAAGCTACTTGTATGTGACTAAAGAAACAATAGAAAATATTACCATTGTTTCAGATTATATTGAATCTTTGTTTGATCTTGATTTTATGTATGAAAGGTTTGTTGGAAGATATCCATCCAACAATGTACCAACAAAAAAAGAATTTTTAATTCTTTTACAGAAGAATGCAAGTTATTTATTTAGTGAGCAAATTTCATATGTGAGTTTAGGAATTTCGGATATGGTAGCTATCAAGATACTAAATAGTTTATATCACTATGATAAGTCAGTTAAATATCCAATTTCAGAGATAAATCAGCTTGAAATAAGCTTTCTTAAGGGTAAAGATTGACTTTTAGGCTCAATGAAATTATAATTCTTGTAGAGTATAAAGACCCAAAATGACGATTTGAG # Right flank : TTCGATTACAATTTGATTCATTTATAAGTGGTTTTTGTACTCTCAAGATTTACAACGCCAAACCCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTGATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAGCGCTTTCTGCAAAACTTGTAAAATGATTTGTGGTAGCTGGTTCTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAATAATGAATAATTGTATAGGATTATAGATAGATGGACATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTATCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGTATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 763697-762409 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969241.1 Streptococcus lutetiensis strain DD06 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 763696 36 100.0 30 .................................... GGTGCTAGTACATTAATTACACAGGTCGAT 763630 36 100.0 30 .................................... GTACACATACGGATACAGATGCTTGGACTG 763564 36 100.0 30 .................................... TCCCACGCTCAAAGAATACCCCGCTAGGTG 763498 36 100.0 29 .................................... TGCCGTTCATTCCAAATGACGCAACATTG 763433 36 100.0 30 .................................... ATTTTCGGTTTTATGTTTAAATTTAAAAAT 763367 36 100.0 30 .................................... AGGCTCAATCGTTGCCCTTGACTACGAAAG 763301 36 100.0 30 .................................... TTACAACATCACGTTTGATGATCCCAAAAT 763235 36 100.0 30 .................................... AATAGTTTTTACAGCTCAAAAAATATTGAT 763169 36 100.0 29 .................................... GGTTCACTTGAAGCGAAAATTGAGCAGGA 763104 36 100.0 30 .................................... TCGTTTCTGCAAGCGTTCGTCGTTTATTAC 763038 36 100.0 30 .................................... TTATGAGTCAATTAAAGATGACTTTGAATA 762972 36 100.0 30 .................................... TCTATATGTTGGTGGTGATGTTGAATAATC 762906 36 100.0 30 .................................... AACCTGAACAGCAGTAAACAGACATTGAAA 762840 36 100.0 30 .................................... ATACCAAAAAAGCCCCTAACCACAAGGGCT 762774 36 100.0 30 .................................... ATCAACGGCTTACGCTGCAGTTGGTGACCA 762708 36 100.0 30 .................................... TTATATTCCCGAATGTTAAAACTCGATACA 762642 36 100.0 30 .................................... CTTAGCCGCTTCTTCCGTATCATAGGCATA 762576 36 100.0 30 .................................... ATACCAAAAAAGCCCCTAACCACAAGGGCT 762510 36 100.0 30 .................................... ATCAACGGCTTACGCTGCAGTTGGTGACCA 762444 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACTGAAGGTAAAGATATCGAGGAAGCTATGAAGCATGCTCGTGAAATGCTTGAGAGTTCGCTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGCTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCTACGAG # Right flank : TACTGTATAGGGTTTGTATGAATAATACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //