Array 1 11-467 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLS01000219.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA36 strain SGSC 2216 SEEHRA36_259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 72 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 133 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 194 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 255 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 316 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 377 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 438 29 96.6 0 A............................ | A [464] ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATGTGGATAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 481-268 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLS01000425.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA36 strain SGSC 2216 SEEHRA36_464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 480 28 86.2 33 ....-...............AG......G TTGATCGAGAGTGCGAAGAGGCAGAACGGGCTA 419 29 96.6 32 ............................G CAGGTTATGCGCAAAAATTAATTCATATTATA C [397] 357 29 93.1 32 .................A..........G GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCA # Left flank : GTGAAGTTCAGGTAGCCCATTACGC # Right flank : AAAATATCAATTTAATTTTGCTTCAGGAGCAAAAATGAAAGCCACCTCCGAAGAACTCGCAATTTTTGTCGCTGTCGTGGAAAGCGGCAGCTTCAGCCGGGCGGCAGAGCAGCTTGGACAGGCCAATTCCGCTGTCAGCCGGGCAGTTAAAAAGCTGGAGATGAAGCTCGGCGTCAGTCTGCTTAATCGTACGACCCGACAGCTGAGCCTGACTGAAGAAGGAGAGCGATACTTCAGGCGCGTGCAGCAGATACTGCAAGAAATGGCC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28-464 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLS01000323.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA36 strain SGSC 2216 SEEHRA36_466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 28 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 89 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 150 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 211 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 314 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 375 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 436 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 7 29 100.0 39 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGTATCTTCGATCATACCGGAACGGTG # Right flank : TCTGGTTATAACATCGCAGC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 407-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLS01000473.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA36 strain SGSC 2216 SEEHRA36_138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 406 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 345 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 284 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 223 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 162 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 101 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG G [84] 39 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GGCGAGGTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45-1537 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLS01000243.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA36 strain SGSC 2216 SEEHRA36_86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 106 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 167 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 228 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 289 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 350 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 411 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 472 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 533 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 594 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 655 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 716 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 777 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 838 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 899 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 960 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1022 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1083 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1144 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1205 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1266 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1327 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1388 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1449 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1510 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTAGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17796-18008 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLS01000243.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA36 strain SGSC 2216 SEEHRA36_86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17796 29 100.0 32 ............................. TCGAAGCTGATTTTCAAGATGCGCGTAACGGT 17857 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 17918 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 17980 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : ACTTACGACCATTTAGACAAGGCGCAAAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //