Array 1 695068-696952 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822033.1 Streptococcus thermophilus isolate STH_CIRM_1048 chromosome STHERMO Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 695068 36 100.0 31 .................................... TCAGGAATCTCATTGAAACCAACTTCAAGAC 695135 36 100.0 30 .................................... ATGGTATCATAGGAAAACAAAAAAAGACTA 695201 36 100.0 31 .................................... TTTTAAATAATTTAAATAATTGTTGAAAATA 695268 36 100.0 30 .................................... AATCAAGTTAAAGGTTCATTCTCTAATGCA 695334 36 100.0 30 .................................... CAACTTGGGCGGGTTTGATTGAAAAAAAGA 695400 36 100.0 30 .................................... TCGTATAAATTATTACGATTCTACTGGTAA 695466 36 100.0 30 .................................... TAAAAAGCAGGACTTCACACCGCAATCGGT 695532 36 100.0 30 .................................... AGCTGTTCCTTCTTGAACATATCATAATAA 695598 36 100.0 30 .................................... ATTCTAACTTGCTACCAGCAATGCAAGATA 695664 36 100.0 30 .................................... CCAACTTTAGTCTATCAATTAGTGATTACT 695730 36 100.0 30 .................................... GCCAAAACAGTGTTACCGTCAGCGAGACCC 695796 36 100.0 30 .................................... CTCTAAAGGCAAAGAAAGAGATTGGCGAGG 695862 36 100.0 30 .................................... ATCATTTCTAGTTTAGGGTTATTAAAGGCA 695928 36 100.0 30 .................................... TAAATGGATAGTTTCCATTGGCTACATTAA 695994 36 100.0 30 .................................... TGTTATCGTTGTTTCCTTGTGGTGCGTCTC 696060 36 100.0 30 .................................... CTTTTTGTTCCCACCTTTGACCATATCAGA 696126 36 100.0 30 .................................... TGGAGTCCCGGAAATCTAGACATTGGTAGT 696192 36 100.0 30 .................................... AGAAACACTTTTTGAAATTAAAACAAAAAG 696258 36 100.0 30 .................................... TTATTCTTGGAATTATTACAGACCCTACTA 696324 36 100.0 30 .................................... GCTTTCATTATATCACTTACTCATAAATCT 696390 36 100.0 29 .................................... TTTTCGCAAAGTAAGCGAAGCTCTACGTG 696455 36 100.0 30 .................................... TAATCACCCCTTTTTCTAGCTCTTGATTGA 696521 36 100.0 30 .................................... AAGTTGATCGTATCTATTTAGAATATCGCA 696587 36 100.0 30 .................................... CATAGTATAGCCGTCTTCTTTGATTGATTG 696653 36 100.0 30 .................................... ATTCACTTTGACAGATACTAATGCTACATC 696719 36 100.0 30 .................................... CAAGCAGTGTAAAGGTGGTTTAAATGTTAA 696785 36 100.0 30 .................................... CCATGGGTGCTAAAGGTGATGACTACCGCT 696851 36 100.0 30 .................................... AAATGAACAGACAAGAAGCAACAGAAATTG 696917 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATATTGAGTTTATGTATGAAAGGGTAAAGAAACACTATCCAAGTAATAATTTTCCAATGAGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTATTAACAAAAATGACGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTAAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1389400-1387055 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822033.1 Streptococcus thermophilus isolate STH_CIRM_1048 chromosome STHERMO Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1389399 36 100.0 30 .................................... GGTTGACCCAAAAACCCAACAACTTATTAA 1389333 36 100.0 30 .................................... TTAATTGTACTGCCGAACCGCTTAATTAAT 1389267 36 100.0 30 .................................... GAAAAGAAATCGCGATTTCTATATTACCCT 1389201 36 100.0 30 .................................... TAAATCCACTGACCAATACTTATGCAAGGT 1389135 36 100.0 30 .................................... TGGTTTATATAGAAAACGGCAACTTGGATA 1389069 36 100.0 30 .................................... CCAAACAATTACTGTTAGACATGCTGATGA 1389003 36 100.0 30 .................................... ATGTTATTCTTTTGATTCTTTTGAAGTTCT 1388937 36 100.0 30 .................................... GGCAAGTTCAGGTGGAGCTGGAGGTCATGT 1388871 36 100.0 30 .................................... TTTAATAACAACTATCAAGAACAAGGTCAT 1388805 36 100.0 29 .................................... TTTTTCTGCTCTTGATGAAATGGGACATC 1388740 36 100.0 30 .................................... TAGTTTTATGTATTTGTGGGGTTTCGGAAT 1388674 36 100.0 30 .................................... ACCACGACATAGTTCTCTTGTTTGTCCTTT 1388608 36 100.0 30 .................................... CGCTATCTCGGACGCCAAAATCAAGGAAAG 1388542 36 100.0 30 .................................... AGAGGGTTGGCTTAAAACGGTAGCTAGTAT 1388476 36 100.0 30 .................................... TGATGGCATTAATAAACTGATTTCCGATTT 1388410 36 100.0 30 .................................... ATCAAGTTTGTTTGCATCGCTAATCCACTT 1388344 36 100.0 30 .................................... GGAATTAAGCAAGAAAGAGCATATTGACGA 1388278 36 100.0 30 .................................... TTCAGGTGTCTTTTCTGCCTTCGCTGAATA 1388212 36 100.0 30 .................................... CAAGTCAAGACCACATTATCAAACTAGACA 1388146 36 100.0 30 .................................... GTTGATTATGCGTACCATTAATAACTTTAT 1388080 36 100.0 30 .................................... ACCTCTATAGGAAAATTCTTCTCAGATACG 1388014 36 100.0 30 .................................... AAAGTACTCAAAGGAGAAAAAACTCAAAGT 1387948 36 100.0 30 .................................... ATCAAGGTTGTTAAATTCAAAAGCAACCGT 1387882 36 100.0 30 .................................... CGCTATCTCGGACGCCAAAATCAAGGAAAG 1387816 36 100.0 30 .................................... AGCTAGTGCCTGAGCCTTGCCAATAAGGGA 1387750 36 100.0 30 .................................... GCTACGACCTTCATTTTCTTGTAAATATGA 1387684 36 100.0 30 .................................... TAGAGGTAATGATGGTATTGCAGGTAAGGA 1387618 36 100.0 30 .................................... CAAGGATGGAGGCGTTTGAGACAAGTTTGT 1387552 36 100.0 30 .................................... TATCTTATTTATCTATTTCATTGAGTTTGG 1387486 36 100.0 30 .................................... TGCAAAAGTAGACTATGTTCTTGACTTAGT 1387420 36 100.0 30 .................................... CTGAAGCAGTAGAGAACTCTACTTGGAACT 1387354 36 100.0 30 .................................... CATTTGATGGGAATTTAAGTCAGCTTGGTT 1387288 36 100.0 30 .................................... TTGAGAGTAGATGACACGATTCAATTCTAT 1387222 36 100.0 30 .................................... CCTTAATGCCAATGGTATTTTGAAGATTAA 1387156 36 100.0 30 .................................... AATTACAAAAGTCGAGTTGGCTGAAAAAAT 1387090 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATGATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //