Array 1 477250-478436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQX010000002.1 Salmonella sp. 32070601201800144SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 477250 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 477311 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 477372 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 477433 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 477494 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 477555 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 477616 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 477677 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 477738 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 477799 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 477860 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 477921 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 477982 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 478043 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 478104 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 478165 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 478226 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 478287 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 478348 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 478409 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494607-496286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQX010000002.1 Salmonella sp. 32070601201800144SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494607 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 494668 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 494729 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 494790 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 494851 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 494912 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 494973 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 495034 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 495095 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 495156 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 495217 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 495278 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 495340 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 495402 29 96.6 32 ...........................T. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 495463 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 495524 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 495585 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 495646 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 495707 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 495768 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 495829 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 495891 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 495952 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 496013 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 496074 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 496135 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 496196 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 496257 29 93.1 0 A..............A............. | A [496283] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //