Array 1 113201-112585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOI010000036.1 Coleofasciculus sp. FACHB-125 contig36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 113200 37 91.9 36 ..........A........T.....A........... GACCGAGAGCTTGAGCGGGGGATGATTGTAACTCAG 113127 37 100.0 36 ..................................... TGAGATTTTCAACCGAATTTTCCGAGTAATTTCATC 113054 37 100.0 37 ..................................... TCCTTTGGCGATCGCGCTACCTGGTTCTAGTGCTAGA 112980 37 100.0 32 ..................................... TTAAAGCGGATTGGAAAAAATTCAATCGTATT 112911 37 100.0 36 ..................................... GATCGCCGGTTGCCGAACATTTATTGCAATGGCTCC 112838 37 100.0 36 ..................................... GACACAATTTTTGGCGATCCACGAGACCCCCGTTGG 112765 37 100.0 38 ..................................... ACAATTTCTCATCTGGATTATGCTTCCAAATGCGTTCG 112690 37 100.0 32 ..................................... CCAGAGCCAGTGAAAGATGCGATGTGGGAAAT 112621 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.1 36 CTTTCAACCCGCCCCAAGGCGGGAAGGCTGATGAAAC # Left flank : TCGGATAAACCACTGACTCTGTACGGATAACGCGATAGTTAGTTGTTTCTGGCTGGATGCTAGAATATTGAAGTTCAATAGCTCATAGCTTATGGCTATTAGCTCACAGCTTGGGGAATTAGCTCAGTTGGTAGAGCGCTGCGATCGCACCGCAGAGGTCAGGGATTCGAGTTCCCTATTCTCCATTAATGTACGTTCGCAAATTAAATGTCGCGATTCGCAAATTAATGTCGTTTTTCGCACAATCATGTCGTTCTTCGCAAATTAATGTCGCTTTTCCCTCTTGAGCATCTGTTCGCAAATTAATGTCGCTGTTGATTGGCAACAGTTGGTTTGTGTGATCGCAGCGCTCCTTTCAACCCCCCTAAATTTGTGAGACGATCTACCACTATTATTCTATGATTCCAATTGCTGGTGCAGCTCCAGAAAATTTCAAACGCTCCTAGCCTGGAGGGTTGTGGAGACTGCTGGTAATCCTAGTCAGAGAACGTGGTTTTAAA # Right flank : CGCGCCCGCTGAAACCCTTGCCTATACAAGCTGACAAATACATTTTTGTCGGCTGATTTTAAATTACTCATTTCAGCTCTTTCCCAAGGAGAAAGTTGACTGACATGAAACTCTAAAACCAAGACTGGACAGGAGTTTCGACCGTTTGACGGCATTGCCAGGATTTTGACCCCACTTTGACCCGTCAAAAAAAATTTGGGAGGGTTCCCCCGACGAAGGGGGTGATTCAGTAGCCACCACTGAGGAAATCCACACCCTTGTTGCCAAAGGTTATTGCAATTAAGCATTACTTCTTATTGCTGGGAGCGCACCTATCCCGTCTATAGACAAATCTCTACAGACAGCAGCATCAGAAGCGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTCTCACAACAGTCAAACTAACCCAGATTTTTCACAGTACAGCGGCTGTTAAAAGCATGAACTGCGGCGCTGTTATTTATGTATTATATTGTCAAGGTTCAGTATCTGCTTAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCCCAAGGCGGGAAGGCTGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 19978-19720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOI010000041.1 Coleofasciculus sp. FACHB-125 contig41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 19977 37 100.0 36 ..................................... CATAAGGCATTCCACATTCAACGCAGTCCGACATCA 19904 37 100.0 36 ..................................... CCCATTATTTAACAGCCTCCTTTCTCTGATTTTTTT 19831 37 100.0 38 ..................................... GAAGAACGTGAGCTAACGCGCAGAGAAAAGGCGATCGC 19756 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 37 GTTTCAACGACCATCCCAACTAGGGGTGGGTTGAAAG # Left flank : AATTATAAATGCGCCACAGGTCATGTTCGTTTGAACCTCTGAGCTGGAGACAATTATGGGTTTGTTTGACTGTCGGAAGACAGTTGTACTTTCTATTCCCTAGTAGCTGTCCGTCCAGGATGCTGATATCTATGGTTCCGGCTGTAGAAATGATTAACTTGTAAGTTGAAGTTCACTGGGACTTTAATCTTATGGGGTAGGAGCGCTCCCATGCAAACTGGATGTGGGTTTACCACAGTGATGGCTACTGAATTACTCTTGACCAAGGGGATTACTCTTGACCAAGGGGGCCCACCCTAATTTTTTATTTTTCGTGAACCCAAGCGGGGGCAAAATTCCTGGGAGGTTTACGAAAACTGTGAATTCCTTATGGAATATTGATTCCAGTATTTCTGTGGGATGGTTGCTCCTGTAAATACAGGACAGATAAAGCGAAAATTTTAGAGGGTTACGAAAATCGCCTCTAAAAGCTCCTCCAGGTAACTGTTGTAGCGATCGCT # Right flank : TTGGTTAACTATTTTTTAGGGGGTTGAAAGGATAGAGCATCAGATTCTGCTTCAAAAAGAAGTTTTTAAACTTAAAAAATAGCAGAGAATGCCTAAAGCATAGATATGCTAGGTAAATCATTAGCAAGTAGTCAAATCAAGCTAACTTCAATGAGGTCAAATAACTTGACAAAACGACATTAATTTGACAACGATGACATTTAATTAGTCAATCGACAGCTTTCAACGAGCATGGAGGGATTCGAACCCCCGACCCTCAGAACCGGAATCTGATGCTCTATCCACTGAGCTACATGCCCTAATAACTTGAATAGTATAACATTTTTTGGGATTTAGCAATTCGGGCATTCCAGATGCTGTTACTTTACGGTAAATTGGTCAGCGGTTGGGCGATGCCTCTCAGAGAAAATGATTCGCTTTGCACCTGACGCCAGAAGCCTTCATTTTGATTGCTCCTGGTCTATATCAGCCTTTTTTTTGCTGCTGAATCGGAATCTCTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCAACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 29748-32296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOI010000055.1 Coleofasciculus sp. FACHB-125 contig55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 29748 35 94.3 40 ...............TT.................. CAACGGATTGTCGGCAGAGCAGGCGCAAGGAACATTTTTA T [29763] 29824 35 100.0 36 ................................... CAACAACTTTGGGTTCACCTACGACCCTCGCTGCAA A [29839] 29896 35 100.0 35 ................................... CTCCCAAATAGTCAAAGTGAGGCATTGGGATTCAA A [29911] 29967 35 100.0 37 ................................... CAGAACGTAAGTGCTAGATACTGCTAGTGGCTATAAC A [29982] 30040 35 100.0 37 ................................... CAGAACGTAAGTGCTAGATACTGCTAGTGGCTATAAC A [30055] 30113 35 100.0 33 ................................... CTCGCCTCGGAGAATGAGAGCGCGAGGCTTTGC A [30128] 30182 35 100.0 35 ................................... CAACCCGAAGATGCCTTGGTGGTTTGTGGGAATTA A [30197] 30253 35 100.0 38 ................................... CCACTATATCTACAAACGAATTGCAGTTTCTGCTGATG A [30268] 30327 35 100.0 34 ................................... CTGGGCTGCTCAATACTTCGACCAGGTGGATAAA A [30342] 30397 35 100.0 36 ................................... TGCTTCTCCGATTTTGCTTTTGATGCCACCTACCAA A [30412] 30469 35 100.0 34 ................................... TCGGAGTCACGATCACCCCGATAACGGCGGCGGG A [30484] 30539 35 97.1 36 ..................A................ CAACGATCCATACGGCGAATATTTTGGCACAGGATA 30610 35 91.4 36 ..............A..T........C........ TAGCATTCCAGGGCCAGAACAAATCTTGCAGTTCGC A [30624] 30682 35 88.6 35 ....A.....T...A...........C........ TAAGCTAGACCGCTGGAAGAAAAAAGAATTTTACA A [30696] 30753 35 91.4 34 ....A..........T............T...... TTCTGATGCTAATTGCTTCGCAAATTTAGGTAAG G [30767] 30823 35 91.4 37 ..................C........GT...... TAGCTGATATGAGCCTGATATATTATTGCCTTAAAAG A [30838] 30896 35 91.4 35 ....A............A..........G...... CTGGTAGTACCGATAGACCCGGAAAAGGTCATCAA A [30911] 30967 35 85.7 37 ..A.A...C.....A...........G........ CGTGTCAGCTTTTCCACGTTGCTGAGAAGGGATTGTG 31039 35 88.6 37 ...............TTTA................ TCAGGAGTACATTGACGTGATCGAGGAGCAACTTAGA T [31057] 31112 35 91.4 37 ...............TTT................. TCACGACGCGCTGGACGGATGGTTTGTGTGCAAGGTA 31184 35 100.0 37 ................................... TGCTGATATGACAATTCGCAATGCGCCGAAGTTTGAG 31256 35 100.0 35 ................................... TCAGTAACCTTTGTGCTTAGCTAGCCCATAACCAG 31326 35 97.1 35 .......G........................... TCGGGGGAAGGTTGCTTCATCCTTAGCTAGTAAAC 31396 35 94.3 34 A...A.............................. TAAGACAGGACGCGACTGGCTAATTCCCGTGATT A [31410] 31466 35 94.3 36 ..........T.................T...... CGTGCGCGAAGACTTGGACATGACCACAGACCCCAG A [31481] 31538 35 88.6 36 ...............TTT...A............. CAATGAGCGGTAAAGCATCCGTCAAGCAGCGGTAAA 31609 35 100.0 36 ................................... TACATCACCCGTCAAATTTCCGGTAATATTTCCAGT A [31624] 31681 35 100.0 37 ................................... TGTGGTAAACACTATCGAGTTGCAGATGGCAGCACAG A [31696] 31754 35 97.1 36 A.................................. CCAGGACAGCATGGAAGGTACGGATGGCATTGAAGA A [31768] 31826 35 100.0 35 ................................... CTTAAGTTAGGTAATTGGTAATGGCAAGCCTAAAA A [31841] 31897 35 100.0 34 ................................... TCAGTACGACGACATCACCTTAGAAACCCCTTAC A [31912] 31967 35 94.3 38 .......A.........G................. TTTGGGAGTTCGGGCACTAGCGAAAGATGCGATCGCTT A [31982] 32041 35 97.1 39 .................G................. TCAGCCCGCTTCCCGTGCCGCTAGATTATGGTGCTTTGC A [32056] 32116 35 97.1 37 .............................C..... TTCAAAAGGATGAACACCTTGGCTAGCGTGAGTGGGC A [32131] 32189 35 82.9 36 A...A..A.TT......G................. TACGTCTGGGTTAGCGATGTGCGATGCTTCCTCCCA A [32203] 32261 35 91.4 0 ....A.....T.......................C | A [32276] ========== ====== ====== ====== =================================== ======================================== ================== 36 35 95.7 36 GTTAGAATTCCCTCGAACGAGGGACTAAATTGAAA # Left flank : AAAATTTCTACCTCATCTTGAATTGAATGGTGAACTTTCTTTCGAGGAGTTTCCCAAAGGTCTAGGAATGAGAATTGATGGAGAACTAATTGCCGTGTGCAAATGTGAAGTGTGGGTAGATGCTGCTAGGATGCTCAACGGGAAGCATGGCAAACTAGCCCTAGAAAAGGGATTCAGAATCTGGATAGAATTTACACGTCCAGTTTCTGCTCCAATCTCACTTGGGTATCGCTGTCATTATGGGTTCGGCTCTCTGATTTCAGTGCGCGGATGGGTAGGTGTAGAGGGGCTAATTCCCCAGAAAGCCTATGTATCTAGAAGTGTAGGCTAATTCTGCAATCAACGTGCCGCGCAATTCCCCAAAGCCTTGATATTCAAGCCATTTACTGTTCGTGCATATCCATCGTTTTTGGATAGAGGATTGCTGAAGTGATTTCAGCAAATGATTCGCGTAACTCGAACCTGGAAAAGTGAATATGCAAGGCTTTCAAGATGCGAAG # Right flank : CCCACCAGAATGACACTAAGTTTGGCAGTTTGGCTGGCTAAATTGAAACATTACCAGCTAACAGATTATTACTGCTGCTAAAGGTGTTGAAATTCCCTGTTCTGAGGAACTAAGAACGAATGATACAATTCCTGTATTCCCACAACATATAAGGGACTGTATTAAAACTAATACAAGACTACACCAAGCAACTGTACGAAAATGCTCTTCCCTCCTAGGAGGGACTAGATAAGAATTAAGCCGAGATAGTTGGATAGAACGGCACTTGAGGCATTTGCACGAGCTGTTGATGCGCCAAGATAGGGTAGAACGTGCAGTCTATGTGTTATGAAGCTGTGACCCTCACTGGATAAGGGCGTGCCCCTTCGTGACAAAAAATTCCGCCTAGATTAATTGTCTCTACTAGAGCCTTCGATTGGAGTTGAGAGAGGATGTTCCTCCAAGTCGTCATGCATACATTTCTCAACTGGTGATCGCACTGCTGTCCGCTCCGTTTCTAC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAATTCCCTCGAACGAGGGACTAAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.60,-9.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [14-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //