Array 1 184782-182884 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSA01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 66 NODE_1_length_207898_cov_1.42604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184781 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 184720 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 184659 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 184598 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 184536 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 184475 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 184414 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 184353 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 184292 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 184231 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 184170 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 184109 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 184048 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 183987 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 183926 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 183865 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 183804 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 183743 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 183682 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 183621 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 183563 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 183502 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 183441 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 183380 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 183319 29 100.0 32 ............................. CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 183258 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 183197 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 183136 29 100.0 11 ............................. CGGCCAGCCAT Deletion [183097] 183096 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 183035 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 182974 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 182913 29 93.1 0 A...........T................ | A [182886] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 202619-201064 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSA01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 66 NODE_1_length_207898_cov_1.42604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 202618 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 202556 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 202495 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 202434 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 202373 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 202312 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 202251 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 202190 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 202129 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 202068 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 202007 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 201946 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 201885 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 201824 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 201763 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 201702 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 201641 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 201579 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 201518 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 201457 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 201396 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 201335 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 201274 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 201213 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 201152 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 201091 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //