Array 1 476834-478204 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWM01000003.1 Salmonella enterica subsp. enterica strain SLC10 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 476834 29 96.6 32 .............T............... CAGTATTTCGGTATGGCAAGCAGTAGCGCGAA 476895 29 96.6 32 .............T............... CTCATCAGATAAACCCCTTTGATTTATCCCGG 476956 29 96.6 32 .............T............... CCGGCGCTTTCAATATTTGAACACATTCGGTG 477017 29 100.0 32 ............................. TCAAAATCCTAAAGTGTCAATTTTTAGCCCAG 477078 29 100.0 32 ............................. GGTCGCTATTTCCTGCCCCCTCGGTGGTCGAG 477139 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 477200 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 477261 29 100.0 32 ............................. TGATCTGGCTGAGTTCTCCAGTGACGACAAAA 477322 29 100.0 33 ............................. GCAACCGGTGCTGAACCGGTGGCGGCTGTCAGC 477384 29 100.0 32 ............................. CGACTCATCTCCCTGGTGTGGCTGGCAGTACA 477445 29 96.6 32 .............T............... CTCCGCGTTACGCCGATCGCGCACATTCCAGC 477506 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 477567 29 100.0 32 ............................. CCCCGGTTGGCTTCGACAAAACTGCAATTGCA 477628 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 477689 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 477750 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 477811 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 477872 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 477933 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 477994 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 478055 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 478116 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 478177 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494336-496684 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWM01000003.1 Salmonella enterica subsp. enterica strain SLC10 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494336 29 100.0 32 ............................. GCGACATTAAATTAGCGGTGTTGATGCTGGTG 494397 29 100.0 32 ............................. AAATACGACAGCGCACGTTAAAAAACGAAATT 494458 29 100.0 32 ............................. GCATTAATTTAAATAACGCAATTCAGTTAAAT 494519 29 100.0 32 ............................. TGGGAAAACCTGCTCAAAGAGGATATCGGGTC 494580 29 100.0 32 ............................. GCTATATCCCCTGGGGCGTGGCCGCAGCGGGC 494641 29 100.0 32 ............................. GGCGGCACGTTGTTACTGTTTCCCTCAGTGGT 494702 29 100.0 32 ............................. GAGCTTTGTTATATGAAAATTGGATTGATTGG 494763 29 100.0 32 ............................. CTGGCGGGCGCTGAATTTATCGCCGCCGACTA 494824 29 100.0 32 ............................. GCTATAGAGCGCCATCTCCGGGAGCTGACTAA 494885 29 100.0 32 ............................. ATCGCAACTTTTTATCGTGATATCGAGCAATC 494946 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 495007 29 100.0 32 ............................. CGAGAAATTTAAAAATGGAAAATACCTCCGTA 495068 29 100.0 32 ............................. AGTAACCCGTCCTCGTGCCAGCGGCGAGAGCG 495129 29 100.0 32 ............................. TGCGGGAGTACTGGGATCACGATTTCAGCACG 495190 29 100.0 32 ............................. AATACCTACGCGAACGAACAGTGGCTGAAAGG 495251 29 100.0 32 ............................. GAGATTTAAATGATCCACACGATTACGTTAAA 495312 29 100.0 32 ............................. GCCGCGTTGGTGGACGACGTCGGGACGATTTA 495373 29 100.0 32 ............................. GTATCAGGGCGTTATGTAAAAATCTTCTTTCA 495434 29 100.0 32 ............................. TTTCCGAAGACCTCGGCTGGCCCTTTGAAAGG 495495 29 100.0 33 ............................. GTGGCGTTTAGTAAACAACCACACAACGAGCGG 495557 29 100.0 32 ............................. ACGTAGATATTTGAGGGGATTATGGCGAAAAA 495618 29 100.0 32 ............................. GCAAGCTGGGCAAATGCGGCCACGGCGGACCA 495679 29 100.0 32 ............................. CTGGACGGTCGGATCGTGGGCAATTATCCGTT 495740 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 495801 29 100.0 32 ............................. TGAAATAAATAATTCAAATCCAGTTCTTAGCG 495862 29 100.0 32 ............................. GCCTTCTTCCGTAAGCGCCAGCACGTGCACAA 495923 29 100.0 32 ............................. TCGGCCTGTGAATACTGATAACTGCGGCTGTT 495984 29 100.0 32 ............................. AGTCTCAGGAGCCACCTCCCCCGGAATCTGAA 496045 29 100.0 32 ............................. CTAAAAATGGATGTGGCGCCGTAGGGGTTTGC 496106 29 100.0 32 ............................. GAAATATTTTTCCTGACTCCTCCGACTGTTGT 496167 29 100.0 32 ............................. CAGTTAGCTAATCGTGCATGGCGTACCGAAAC 496228 29 100.0 32 ............................. GGCGGTGCCGCAGGCAGCAAACATTCAGATTG 496289 29 100.0 32 ............................. CTTGATAACGCGGCTGGAACCAGCACCGAACA 496350 29 100.0 32 ............................. AGCATTATTCAAAGAAAGCGCGATAGAAAAAA 496411 29 100.0 32 ............................. CCTCGGAAACGGCCAGCGCCGACAACGCCAGT 496472 29 100.0 32 ............................. TCTATTCAAGTAAAGGAAACGGGCTGACTGCA 496533 29 100.0 32 ............................. TTAATGCCGCTGTAAGCTGTGCCGGTGTGAAA 496594 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 496655 29 96.6 0 ............T................ | A [496682] ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //