Array 1 6470-5379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPM010000006.1 Listeria innocua strain FSL L7-1675 NODE_6_length_97656_cov_63.931553, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6469 36 100.0 30 .................................... TCGTTGATAGCGCGCCACTGCTACAAAAGA 6403 36 100.0 30 .................................... CCTTTTGCAATGATGACATCAATGTTCAAA 6337 36 100.0 30 .................................... GTTGACTCTGATACCTGTCTTCGATGATTA 6271 36 100.0 30 .................................... CATCAATTAACGATATACTTTGGTTTGACT 6205 36 100.0 30 .................................... TACTTGTGATAAATCAAGAGCATATATGCG 6139 36 100.0 30 .................................... GATTAACGACTACAAAGCGGCGAAGGGAGG 6073 36 100.0 30 .................................... TTCGACAAATGAATTTACTGTATACAACGC 6007 36 100.0 30 .................................... ATCGGGCACAATAACCGCTGTTAATCTTAA 5941 36 100.0 30 .................................... TGGGGGACGAAGAAATTGAGGCGAAATATA 5875 36 100.0 30 .................................... TAGAATACGCTCTATTTCGGCTCTTGCTGT 5809 36 100.0 30 .................................... AGGAATTGACTCGGATAAATAACTTTATAG 5743 36 100.0 30 .................................... TGCTTTTTCCCTGTTTTTACTGCGCTGTTT 5677 36 100.0 30 .................................... TTTATTCGCTATGAACGAGAGCCGGGCCAT 5611 36 97.2 30 ................C................... AACTGTTTTCTTAGCTGCATCTGTTGCCCC 5545 36 100.0 30 .................................... AGTAAAGGTATAATAAATGTAACTATAGAA 5479 36 97.2 30 .......................G............ AGAGAGGGTGAACTCTAAATAATCGGAAAT 5413 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCAACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACAAGAGTTAAGGAGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CATCTCTCAATCCACTCCAGCTAGAAAAGTTACACCATTATGAAAGAGAGGCTCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTTTATATACCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTACCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGCGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATATACTTCATGGAACGGCGAAGAAAATTTACCTTTGAGGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1154029-1152192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPM010000001.1 Listeria innocua strain FSL L7-1675 NODE_1_length_1475107_cov_50.006884, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1154028 29 100.0 35 ............................. TTAGTATTCCGAGCCGGGAATCTGTGAAAAAATCT 1153964 29 100.0 34 ............................. TTTTATACGCTGAAACTTAGCGAGCTGCTTCGCC 1153901 29 100.0 36 ............................. GATTATATTTAAGCACCGCTATGTCAACCGCGATGC 1153836 29 100.0 37 ............................. GAAATACATCGAAAAGAATTGGCTTACGAAAACCTGA 1153770 29 100.0 36 ............................. AGCGCACATAAATTCTATATTTTCTTTCGCTGCTGC 1153705 29 100.0 36 ............................. CCCATCAGCGTGCGTAGTACCAGATACTATTGAACC 1153640 29 100.0 36 ............................. AAAGCCGCAGACTTAGAGAAAGTTGCGACGTTCTTC 1153575 29 100.0 34 ............................. CATCTTCACTTGTAAATGCTTTGTGTGTTTCACT 1153512 29 100.0 35 ............................. GAAACAACAGAGGAGCATGAAGCTTTGCAACAAGA 1153448 29 100.0 35 ............................. TCGGTCACAAGTGGTAACACAGCACCTGCTTTGGC 1153384 29 100.0 35 ............................. TTTGTCTGATGCTCATTGATCTATTTCTCAACTTT 1153320 29 100.0 35 ............................. GAAAGAGCTTCTTCTTTAGAATGTGCTATAGTGTA 1153256 29 100.0 36 ............................. AAATTAGTAGTTAAATTCGTTGCTTTTTTGGACATT 1153191 29 100.0 35 ............................. TCGGTCATCGCGGTTCCAGCTTTTGTTAACTTTTG 1153127 29 100.0 34 ............................. GAATAAGCTTCGATAAATTTCCCGACCTCAAGAA 1153064 29 100.0 36 ............................. GTAATTAATTCAGTAGCTGACTTAATACGTTCAATG 1152999 29 100.0 37 ............................. CTGTTTATCTGTATACACACATACTATTTCGTCATTG 1152933 29 100.0 36 ............................. TAACACAGAACATAGACATTTTCATGTTGCAGGTGT 1152868 29 100.0 36 ............................. TGGTTTTCATCTTTGAATTCTTGGTGTACTGATCCC 1152803 29 100.0 36 ............................. ATCGCTTTTAGTCCCGGCTGAATAGCATTCCATGCC 1152738 29 100.0 35 ............................. AAAGGTTCGGACTTGGAGAAAGTAGCCGACTATTT 1152674 29 100.0 36 ............................. GTTGTCCATATGTCTAATTCTTTGATATACACTATT 1152609 29 100.0 36 ............................. TTCTGTTTGGAAGTAGCTGTGTCGGCAGCCCAAGTC 1152544 29 100.0 34 ............................. TAAAAATTGATATTATTGTTGGACCAGAAGCACG 1152481 29 100.0 35 ............................. TATTGTACTCACCTAAATCGTGATCAAGCGATATT 1152417 29 100.0 37 ............................. TTCGAATCCTTCCGCTTTCATAGCAGCAACAACCTTT 1152351 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 1152286 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 1152221 29 93.1 0 .......................C....C | A [1152196] ========== ====== ====== ====== ============================= ===================================== ================== 29 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCAGCAAGAAAGCCATTATAAAGCCCTTGGTTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACGCCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //