Array 1 303271-304215 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLSK01000112.1 Pseudomonas aeruginosa strain WH-SGI-V-07690 WH-SGI-V-07690_contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 303271 29 100.0 32 ............................. GTCAGGTCCTCGAGCGGCGGCACCGGGGTGTA 303332 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 303393 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 303455 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 303516 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 303577 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 303638 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 303699 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 303760 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 303821 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 303882 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 303943 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 304004 29 96.6 32 ...............C............. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 304065 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 304126 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 304187 28 79.3 0 A..........A..C..-.....A....T | C [304191] ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 313388-315492 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLSK01000112.1 Pseudomonas aeruginosa strain WH-SGI-V-07690 WH-SGI-V-07690_contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 313388 29 100.0 32 ............................. AAGACATTGAAGCCGTGGTGGAGTCAGGCGAG 313449 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 313510 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 313572 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 313633 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 313694 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 313755 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 313816 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 313877 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 313938 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 313999 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 314060 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 314121 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 314182 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 314243 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 314304 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 314365 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 314426 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 314487 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 314548 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 314609 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 314670 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 314732 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 314793 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 314854 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 314915 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 314976 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 315037 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 315098 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 315159 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 315220 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 315281 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 315342 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 315403 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 315464 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //