Array 1 106998-107501 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIK01000012.1 Clostridium botulinum strain ATCC 17862 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================================================================================== ================== 106998 31 100.0 36 ............................... CAAATAGATCTGCTTTTATTCTTCCTGTATATCCTA 107065 31 100.0 33 ............................... TTTTAGGTATAAGTGACCCAATATTAGGCACGT 107129 31 100.0 35 ............................... TGCTATGCCGCAAGAGGTAGAGAAGGAAAAGCACC 107195 31 100.0 34 ............................... GGGAAAATAATCTCAGAGTTGCTTGTCCTGGTAG 107260 31 100.0 35 ............................... ACTATAACATTTAAAAGAGGAATAATTCTTAAAAT 107326 31 96.8 114 ..............................A GGGAACCCAAATCTGTGATTTGGTGTGAGTCGCTTACTCATTCGAGGAAACGAGAAGGAGTTTCATTAAATAATTAGATATTTAGTATTTTAAGCTTATGTATGGCTTGTAAAC 107471 31 87.1 0 A.......T......A..............A | ========== ====== ====== ====== =============================== ================================================================================================================== ================== 7 31 97.7 48 GTTGAACAATAACATGAGATGTATTTAAGCT # Left flank : GTATGACATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCTTCCTAGAATAGGTTCTGTGCCAGTTACTCCATCTCTAAATTCTACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCTGTACAATATTTCTCATAGGACTATTATATGATTAGGTTAAGGAAGTTGTCATTTGGGTATCTATAAAATCTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTGAAATAAATAAAAGAAAAGAACAAAAACTTTTTCCAACCGACTCTAGTTCCAAAATCTATCTTAACCTTTGATATATAAGAGGTTAGGGGGTGCTTTTTATGTAAATTTCAAATTATTTAAAACGGTTGGAAAATTTTGTTTAGAACCTTGTAAAATCAATGGTTCTATGATATTCTTCAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAATTCAAATCTGTGATTTGATGTGAATTGCTTACTCCTTGGAGAGTAGGGGAAGGAGTTTCATTAAGTAATTATATACTTAGTATTTTAATACTAGATATAATACATAAGATTAAATATTAATATAGTATGTAATACATATAATGAAAATTATTAAAAGTCTTAGAAAAATCTAAGACTTTTATTTTATGCAAAATTTTAGAATTAAATATAACACTAGATTTAAAAATATTTAATGGAAGCAATAATATTTTCAAATTTAGTTTTTATAAAAATTAAGTAAAATAATTGGTTATATAACTAAAGAACTGTATGGTATAATATAGATAAAATTGTATAAAGAGGTGTATAAATGGAATTTTGGGAAGCAATTGTAACAGTCATGTTAAAAAAAGACATATATTTTGAAGATTGTGGATATATAATAGGGAAAAATATAAATAAAAGTATGCTTTTGGATAAAGATTTAAAAGAAGTACATCCAAAGAAACAGTACA # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-1.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 120675-121110 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIK01000012.1 Clostridium botulinum strain ATCC 17862 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 120675 29 100.0 37 ............................. TAGTTTAGCAAACTACTGCCTTACCATTAGGCTTATG 120741 29 100.0 37 ............................. TCTTTATATAGATGCATATCTTCTAATACTCCACCTG 120807 29 89.7 37 .......T......GA............. AAGGGTTCTCCACACTCTAGTTCTTTCATAAGTTCAG 120873 29 79.3 68 .......T......GA......C....GC AAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTTTTGCTTTATTACTTC 120970 29 55.2 30 ....GTT.A.TTG.G....T.TA..G.C. AAAATATTTTTAAAATATAGTTTTAATTTT 121014 29 58.6 19 .AT.GTTT...TT.T..T...G......G TAGTGTTGGAATTTTAAAC C [121036] Deletion [121062] 121077 29 69.0 0 ..A..T.T.TT...G..G.T...A..... | TTTTA [121089] ========== ====== ====== ====== ============================= ==================================================================== ================== 7 29 78.8 38 TTGAACAATAACATAGGATGTATTTAAAT # Left flank : ATGAAGGATTTGTTTTAAATACAAATGGAGAAGAATCAATTATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTGAAAAAGACTTATATAGTGAAGTTAGATTTGATATCCCAAATGCAAGACTTATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATGAACCTTTGTAAAAACTAGAATGGATTTATATCCATATCTAGTTTTTGCTCTTTACTGAAATTCTATAAGTATATGGGTGTTTGTTATGTACTATTTGTGTATATTTAAAGCTTTCCAAGTGAACTCAAATTCAAAGCCTATTCTAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGTATTTTTTAAAAAGCAGAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGCCTATTTTACTATGA # Right flank : TTGTAAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTCCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCATTTGGTATAAGAGACAATAATATCACTGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTATTATAATTTTCTTCCCCTAAATTTTTATTTGTTTTATAGTTAACGGTTATTTCATAGGGCTCTTTAGTAGTTTGTAGGCTAAATCCAGCACTATATTCATTGGCAGGTAAATTTTTTATAATACTTCCTACAGAACTATTATCACCTACATATGTGCCTTTATGTTTTATCAAATCATATGTTTCAATTTTAGAACTATTCTTAACATTTTCCTTTGATTTTTTTTCAGAGTTTACTCCACAACCTATTAAATTTAATGATAGGATGAGTACT # Questionable array : NO Score: 4.18 # Score Detail : 1:0, 2:3, 3:0, 4:-0.06, 5:0, 6:0.25, 7:-0.57, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACAATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-46] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 127537-127965 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIK01000012.1 Clostridium botulinum strain ATCC 17862 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 127537 30 100.0 37 .............................. GGAATTTCATTTAATATTGCTATATTATTTATTATCC 127604 30 100.0 34 .............................. AAGTTATCTCTTCCAAAATATCCACCAGTATAAA 127668 30 93.3 35 A.......A..................... ACCATACTAATAGAGCTATAACAATTAATTTAATG 127733 30 96.7 38 ...............A.............. TATGCTCTTTTAGCTGCATAACCAGCTATTTGTGTTAA 127801 30 93.3 38 ...............AG............. TGCACTAGCTTTTATTTTTTCTATAGTTTCGGTTTTAC 127869 30 96.7 37 ........A..................... AAGGCTTTGTCAGTCAGCCCAGCGCTATTTTTCATAG 127936 30 86.7 0 A.................G.........GC | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 95.2 37 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : GTTTTTTGCAGTAAACATTTATGATACGATTGTTTTAGATATAGGTCTTTTTTGTCATAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCGTGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTTATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTACTTCGAGAATGGGAGAAGTAGTTTCATTAATGAGTATAGTATATAGCTTATATATAATTGAAGTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGGATAGGTTTGCTTTATGTATTTATAAAAAAACAAAATCACTTGGAAAACTTTCTTTCAAACCTTGTAAAATCAATGGTTCTATGCTATCCTTTAAATTAAGAAATGGTCATTTTACTATG # Right flank : CAGAGAACTCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGTAACGAGAAGGAGTTTCACAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGCCATTGATATATAAGGCTTAGAATAGGTTTTTGTTATGTGCTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAGCAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGGAGTTTCATTAATTGAATTTTTCCAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTCTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGGAAACTTTTTCTAGAACCTTGTAAAATCAATGGTTGTAT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 4 128503-128862 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIK01000012.1 Clostridium botulinum strain ATCC 17862 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 128503 30 100.0 37 .............................. TACAAGACTATATTGATAAGCATTAAGGTATAATTTA 128570 30 100.0 36 .............................. AGTTTATCTCATTTATTGATGCGGATTTGATGAAAT 128636 30 93.3 36 ........G......A.............. TGAACTTATAATATATAATGTAATTAAAGGTTAAGA 128702 30 100.0 35 .............................. TCTTTAGCGTCTTGATCTATACCTATATATTTAAG 128767 30 96.7 36 ..................G........... CCAGTTAATTTATCTATAACCTTAAATACCATATAA 128833 30 90.0 0 ...............AG............C | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : CTCCTTAGAGGTAACGAGAAGGAGTTTCACAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGCCATTGATATATAAGGCTTAGAATAGGTTTTTGTTATGTGCTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAGCAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGGAGTTTCATTAATTGAATTTTTCCAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTCTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGGAAACTTTTTCTAGAACCTTGTAAAATCAATGGTTGTATGATAATCTTAAAAATAAGGAATGGCTATTTTACTATGG # Right flank : CAAATTAAAATCCATGATTTTTTCCCTTTAAATTTATTTAGTTTTTAGAGCAGCGTTGATAATATATCAATTTTTAAGAGAAGCCATTTTAGACTTCCCTTAAGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGACATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGAACTACTTTCATATGTCCAAATAGTTCCACTTCCACTTAATTTCAACTTCCCTTTATATATTCCAGATTCTATGATTTCATCACTTTTATCTAATCCAAAAGTATCATAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //