Array 1 19168-17551 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQR01000019.1 Lactobacillus crispatus strain UMNLC1 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19167 29 96.6 32 ............................C ATGTAAGTCCTTTGCTAATTCTTCTGCAGGTA 19106 29 96.6 32 ............................C AGTGACACCGCCGCCAAACAATACAAAACTAG 19045 29 100.0 32 ............................. TACGTGAACGCTAGGATCTGTCATTGTTTTTA 18984 29 96.6 32 ............................C TTTCACTCAGTTTCTGCTGCTGATAAATCATA 18923 29 100.0 32 ............................. AAGAAACGTCAACTTTCAGGCGTTGAATCATC 18862 29 96.6 32 ............................C GAGCTGTTGATCAAATTATGCTCAAACATGGT 18801 29 100.0 32 ............................. AACGATGCTTTTTATAAGTCCAAAGAGTGGCG 18740 29 96.6 32 ............................C GTGATTTAAGAGAAACGTTCGAAACCAAGAAA 18679 29 100.0 32 ............................. AAAGTTCGATTGAGATCATCATCAAATTTACC 18618 29 100.0 32 ............................. AAAATAGACGTTAACCTAGTCCCAAACATTTG 18557 29 100.0 32 ............................. GGGAACGTGGTGGATTCGATGCACAACATGCA 18496 29 100.0 32 ............................. ATGACTACGCTTACCGTTCCGACCGTGAAGTT 18435 29 100.0 32 ............................. GTTCTGTCAATCCGTATAAATTAACCCGTCCG 18374 29 100.0 33 ............................. GTTTGTGTTATTGTAGCGGTGTTAATCGCTGCC 18312 29 100.0 32 ............................. AAAGCGACTGTATGAGGTTATGATCTATCTTA 18251 29 100.0 32 ............................. GATGTTCCGCAGAATGGGCAAAAACGAATTTT 18190 29 100.0 32 ............................. CAGTATTTGACAGAATGCAAGAACAAGCTGAA 18129 29 100.0 32 ............................. GACACTGACACTACGGCTGGCGGTTTTGCAGG 18068 29 96.6 32 ............................C CAGCCAAGAATTAGCCGGTATTAACAATATTC 18007 29 100.0 32 ............................. TTATCGTTCTGATGGAAAAGGAGATATTGTTT 17946 29 100.0 33 ............................. GAACATATGTTAGGTGTTTGGGACTTTGAAGAA 17884 29 100.0 32 ............................. GTAAAAATTTACATGCTGGGTAACACAGTAAA 17823 29 96.6 32 ............................C TCATCAAAAATAATTGTAGTTACTTTGGGATA 17762 29 100.0 33 ............................. ATATGTTTCTCGTATGATATTTGCTAAAGATAA 17700 29 96.6 32 ............................C CATCACAAAACATAGTGAAGCAGTTACACCCA 17639 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 17578 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.2 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTGAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51036-49906 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQR01000019.1 Lactobacillus crispatus strain UMNLC1 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 51035 29 96.6 32 ............................C ATGATTTGCTAGTTAAAAACATTGAAAATATG 50974 29 100.0 32 ............................. CTTACCCTGGCGCTGGTATTAGCGATATTGCA 50913 29 96.6 32 ............................C TACACCAGCCGCTATTGATACTAATGACGTTA 50852 29 100.0 32 ............................. TAAGTCAAGCGATCGGAATTATCTGTGCTTGG 50791 29 96.6 32 ............................C GATAATTATATATTTTTTGTTTGTCACGGTGT 50730 29 100.0 32 ............................. AGGCGATTCCGCAATACTTGCGAACCTATCGC 50669 29 100.0 32 ............................. ACACCAAGGATACCAGTTTTGGTAACTTCAGT 50608 29 96.6 32 ............................C ATCACAACATTTTTAAGGAGTTACACCCATTC 50547 29 96.6 32 ............................C ACCGCCAGCATTAAACAAGGTACTCATTTTAG 50486 29 100.0 33 ............................. AAACTTACTGGCGGAGATTTTTATTTTTGGAAA 50424 29 100.0 32 ............................. CACTAGAATCAGATATAACTTTAACTGTATTT 50363 29 100.0 32 ............................. TTTCGCTAGTTTTCTAAATAAGAAGCCCGTTA 50302 29 100.0 32 ............................. GTTCGCAATTGCGAATTGCTGATCGGGCTCTT 50241 29 100.0 34 ............................. TAAAAATCATTCATACATTGTGTGACTGCTGAAA 50178 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 50117 29 100.0 32 ............................. GCACTTGGTCCTTGCGCCTTTAAATTGCGACT 50056 29 96.6 31 ............................C ACAAAATCCAGGTACTACTTTAATCCATGGA 49996 29 89.7 32 ...........AC.....A.......... AACTGATTTAGTGGGTGCAGTTATGGATTGAG 49935 29 75.9 0 ...........AC.....A.TC..T.A.. | T [49918] ========== ====== ====== ====== ============================= ================================== ================== 19 29 97.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTCCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGATAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTGGAACGTACAGAAAAATAGCTGATAAACCGCGTCACGACGGCATTTGTTAGTGATTGAAAGTGTACTTTTTTCTTTCTGAACGATTGGAATTAGTACACTTTTTCTATTTGAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGACGATCGTTCAGTTTGGCAGGTCGTATTGATTATGGTAGTGAAAGTAGGAATAAAGATTGATATAACAGCATTTACAGAGGGCGCAAAAATCAGTCAATTTAGCGTTGAGAGTTGAGTTAACGAGTATGCTATTAAATTTTGACTGTTTCGATTAAAAAATAGAAAATCTGCACAACGGTAGTTTACTCGACGTATAATATTAATATTCCTGAAGATTATTAAGGCGGTAAACAAGATGGCAAATCGACAAATTGAAATAGAAAATAAAGCGATGAAAGAGATTCTTATCGCAATGCATAATTTGGGAGGTCAGGTTACGAGAAAACAAGTACTACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 53760-54097 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQR01000019.1 Lactobacillus crispatus strain UMNLC1 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 53760 29 82.8 32 ..T..T.........TGT........... TTGTCTGATTCGATCACTACAGCAGAGCTGTC C,T,G [53762,53765,53769] 53824 29 89.7 93 ...............TGT........... ATGCTCTTAAGGACATGTCGAAGGAAGAAATTGGGATCACCTCCACACTCGTGGAGAATACCGATATTTGGAGTTCCCTCCTTAATTATTTTA 53946 29 100.0 33 ............................. TTGCATGGTCTTAACGGCTTGGTCAACCTTGTC 54008 29 100.0 32 ............................. GATTTTGATCGTCAAAAAATGGTACCTAAACT 54069 29 86.2 0 G....G.........TA............ | ========== ====== ====== ====== ============================= ============================================================================================= ================== 5 29 91.7 48 AGGATCACCTCCACACTCGTGGAGAATAC # Left flank : TAACTTGAAGTGAACTTTGATTTGTGGTTTTTTCTTTTGCACTTTGCAATTGGGCTTTCGGCATATTTGTCACCTCTTAGCTCCGATTCTCTTAGCCTCCTTTCACTATATACAACACACGCTTTTACGTGTAACGCGAATGATATTTAGAAAAATATGCCAAAAAGGCATCAATCTGGCCGTCTAAAGCCAAATGATGCTTTAATTGTTTTTTCACCAAAATCAATAGCCTAACTTAATGACACTGTTTTTACATAAACTTATTAAATTTATAATTCTTCATATTTTTTGCTCTTTAACTAATTTGTTATCAAAATTGAATACAACGATTAGTAGCTAAGTCCTTCTTACGATTACCAGATTACCAATTCATCTCGATTCTATTTTAGATTTCTTAGCATCTTTTCACTATATAAGTGAACGCAATCTCCGTGCACCATCAACAATATTTTTAAATAATATACAAAAACAGTCACTCTATAGAAAATATTTTTCAGAGC # Right flank : CTAAATGATCCACAATATATCAGCATCGCTCAATCGAAATAATATCATTTTTAATCACTTTTAACAAAGACCAATAATAAAGCCATAATTACAAAAAGCCACTCCAAATAAAAAAGAAGCATTTCTGCTTCTTTTTGAATAGTTTTGCTCCCAAAGTGCCCCTAGGATTCAAATTTCATTTATAAATCCTTATATATCAAGGTTTAAGGGCTATCCATTAAACGATTTCTTGCTCCTTGAAGCGACCATATACTTTTTCAACTTCACTAACACTCATGAAAGCATACGGATCTGCTCCTTGCACGATTTGGCGAATATCATACATATCATATCGATCAATAATGGTAATCAAAACTGTCTTTTCAATATGACTATATGCACCTTCAGCATCGTGCAAAATAGTGATTCCACGATGCATTCGATTCTGAATTCCATCGATAATATGCTGTGGGTGCTGAGTAACAATCATTACTTGCATCTTCTGGTGTTGGGTGTAAACC # Questionable array : NO Score: 3.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-2.24, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCACCTCCACACTCGTGGAGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //