Array 1 161547-160907 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZT01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C4310 NODE_1_length_496432_cov_69.303550, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161546 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 161485 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161424 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161363 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161302 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161241 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161180 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161119 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161058 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160997 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160936 29 96.6 0 A............................ | A [160909] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179232-177679 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZT01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C4310 NODE_1_length_496432_cov_69.303550, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179231 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 179170 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 179109 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 179048 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 178987 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 178926 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 178865 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 178804 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 178743 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 178682 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 178621 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 178560 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 178499 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 178438 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 178377 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 178316 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 178255 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 178194 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 178133 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 178072 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 178011 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 177950 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 177889 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 177828 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 177767 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 177706 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //