Array 1 38911-40569 **** Predicted by CRISPRDetect 2.4 *** >NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 38911 37 100.0 37 ..................................... CGGGTCTTGGGGCGGGCGGTTCATGCGGTTTTATTAC 38985 37 100.0 34 ..................................... GCGCCATGAACACAACGGCGGTAGTTGGACCGAC 39056 37 100.0 37 ..................................... ACGTGCCCAGTGTGCGGATGTGAATACACTCATCATT 39130 37 100.0 36 ..................................... AAGATCGAGGCGGGCAAGCTCGCGGAGGAGGCGGAG 39203 37 100.0 38 ..................................... AACATCATATTAATCCAATTCGATTTATTGCGGAAGAG 39278 37 100.0 39 ..................................... AGATACGACAATAGGAGGCTGCTCCGGAACTTCAACGTT 39354 37 100.0 35 ..................................... GTATGTATCGGGGACGGGAGTAACCCTTCTCAAAT 39426 37 100.0 35 ..................................... TGGCGCTTGTGAGTTACTTAGAGAATAGCCATACA 39498 37 100.0 35 ..................................... CATCAGTTCCTTGACCCTCTCGTTTGCCACGTCGC 39570 37 100.0 37 ..................................... GTGAGTTCATGATGAACCACGTGTAGTGATCAATGGT 39644 37 100.0 38 ..................................... TCGTTTTTTCAGTCGTCGTTTGTCGGGGCGCTCGAAAA 39719 37 100.0 38 ..................................... GGCGCGAGGTCAGCGCGGAGCATGTCACGGACGCGCGG 39794 37 97.3 38 ..................C.................. TATAACCATTTGTGATACATCTGTCATAGAGGAACAAT 39869 37 97.3 37 ..................C.................. CCAAGGATCTGCGTCAGAACCACTCAATTCTGCCGGG 39943 37 97.3 38 ..................C.................. GTGCTCGGTCAGTGGGCACTGGAGTCAGGCTGGGGTAC 40018 37 94.6 36 G..G................................. AAAATTCGGCTTGATGTTTGCGACATAGCGATTCTC 40091 37 94.6 38 G..G................................. GAGAGCGCTTTTACGCCATCGAATACGAGCGGAGCAAC 40166 37 91.9 37 G..G..............C.................. CTGAGTATGATTTCAGCTCGATACGCATTCAGTAAAA 40240 37 100.0 36 ..................................... CCGGACGACCAATACGACCGCCTTTGCGTCGAGCTA 40313 37 100.0 35 ..................................... ACCGCCAGCCAGAAGATGCCCACCCAGTCGTATGG 40385 37 100.0 37 ..................................... ATGCTGACGATCAACACGGACATCCGGTGGCAGTGGC 40459 37 94.6 37 G..G................................. TTGGTGGCGGCCAAACTCGAAGGAAAGGAAGCGATGC 40533 37 89.2 0 G..G........................T......A. | ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 98.1 37 CTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Left flank : CTCTCGTCCACGACGGCGCTCACCGGCTCCACGGAGGAGGAGCAGTTTGTGGAGGCGTGACGGCTCCGGAGCCGACGGGCTCACGAGCCCAGCGATCTCGGCGCTCTGCGAGGATGGTTCCAACTCGGCATGGCACTCACTTTGGGGCCCGGTGCGGCCCCCTTTTTTTCGTGAGTAGCCGGAGGGTAGCAGGTGGGACGATCAAGAGCGGGATGATTGGACGCCTGCGATTGAAGGGCTCGGTTCAGGGCGAAACGGCGCGTGTGGTGCCGTGGATCACCGCAGTGATGGAGAAGCGGCGGGGGTAAGGAGCGCGAACCTGAATCGATGGCGAAAACCCGGGGGGTTCGCGAAATGCAAAGATTCCGCGTGGGGACTGGATTTTTGGGCGGTGAGCGGGTATGATGAGGGCAGTTGGAAGGCGTGTGAAGGACGCGCGATGCATAGGTTCGCGATTTTCGCCCGGAAAGCCGCGCCAGGAGCGGGCTCAGGAGAGTAGC # Right flank : CGCGGCGCCCCCCAATCACGACAAAGAGGGCGGGAATCATCCGCCCTCTTGAATCGTCGTGATGCATTCCGCTTTTAAGCTTCTATCCTCCAAAAGTCACTCCGTGAGCCAAGCCAGCATCCGAGTGCCACAACGGCCATACCGACCAGGGAGATGGCGTCCGACGGACTGAGCCATCTATCCAACACGCCGCCGACCCACGAGCCGAGAGGCGGACCAAGTGCAATCAGTGAGCCCCGTAGGCCCATGATGCGTCCCATGACCTGCGTCGGCACAGAGCGCTGGACGACGGTCCGCGCCAGCGGTGGATACCCGCCAAACAGGAGTCCGGCGCAGGCGAGGAACACGTAGATGAGCGTGAAGGCGTGGATCCAGAACAGCGGCGCGAACGCCGCGCCCCATCCGATGATCATCATCGCCATGACTACGCCGGTCCTGCGTCTCTTGGACATCCAGCCACTGAACGCCGCTCCAGCAATGGAGCTGATGGCATAGGTGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 66900-65468 **** Predicted by CRISPRDetect 2.4 *** >NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 66899 37 100.0 38 ..................................... GATTGCGCCTGTTGAGTTGACCTAATGCGAGTAGGGGG 66824 37 100.0 36 ..................................... TTCCTCAATCCCGATGTGCCGAACAACATCACGATT 66751 37 100.0 38 ..................................... CTCATCGTAGCCGAGATAGACCACAACCGACCACGAGT 66676 37 100.0 36 ..................................... AATGATAGGTTGTGTTAAAGTTGCTACAGTATCAAT 66603 37 100.0 38 ..................................... TTTTCTTTGAACGGTTTATTGTATTTATCGTAACCTAA 66528 37 100.0 38 ..................................... GATCCGCTGGTACATCGGCGTGCCCTGGGTCAGCGGGT 66453 37 100.0 36 ..................................... TGGCTAGCCATAGGCATTTGGTTTATCGGAATGGTC 66380 37 100.0 37 ..................................... ACCAACTGGAAGATCCACGACAGTCTTGTAATCTGTA 66306 37 100.0 38 ..................................... ATACGCCGCCGGAAATGGGAGTGCAGTGACATGCCGAC 66231 37 100.0 35 ..................................... ACATCAAATGTTACACAATATGCGCTTATGGTAGA 66159 37 100.0 34 ..................................... TTGCCGTCGAGGATGATCCGCATGCTGCACCGAT 66088 37 100.0 38 ..................................... GACGACTTGGTGCGGACCATTCGCAGACGGCGGTGGCA 66013 37 100.0 38 ..................................... CACGCCACTTCGGGCGCGGACACCTCCGCCTGTGCAAC 65938 37 100.0 35 ..................................... CGTGGCGCGTCAGTCACATGCTTTGGACATGCCCA 65866 37 100.0 36 ..................................... GCGGGCGATAACATTGTCCACACGACGGGCACGGGG 65793 37 100.0 35 ..................................... AACGCCACGCTGAAGGCGCTCGGCGCGAACCCGCA 65721 37 100.0 36 ..................................... GCGCACTACATGTGGTGTCTCTCATGTAAGCATTGG 65648 37 100.0 35 ..................................... CCGAATCCGATGCGCAAACTGCTCCTCGACTTCTC 65576 37 97.3 35 .............A....................... AAGTTCATCCCAGTAAGCATCCTCGCCAGCGCTTC 65504 37 75.7 0 .................C...........GCCTGGCG | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 98.7 36 GTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Left flank : CGTTCAATCCGGAGAGAGCCGCAAAGATAGCTAAGAGAGCATATGCCAAGAGCACACTCATCCATCGGCCACCCCCTTGCATCTCAGTTGAGACCGGGAGTAGAAAAGTTATTATAGCGCGCGAAGGGCGGCTTGAGAACGTGTTTTTGGAGCATTTGTGATGAACCATAAGCCATAATCTTCTGGGATGGGATTGTGGACGAGGCGCTTTGAGTGAGTCGCGTCGTGACGCACCGCGACACGGGCTCGCGTCAGCAGTTCAGGTGTACATCGACCGAGGACGCTTGCGGAGGCGGTACTCACGCACACGGCGCGAACCTGGATCGATGGCGAAAACCCAGGGGGTTCGCGAAATGCGAACATTCCGCATGGGGACTGGATTTTTTGGCGGTGAGAGGGTATGATTAGGGCAGTTGGAAGACGTGAGACAAGCCCTCTTCAGAGGGGTTCGCGATTTGCGCCCGGAAAACCGCGTCAGGAGCGGGGCTCTGGAGGATAGC # Right flank : CCGAGTTAGGCGTTCCTTTTACCTGATGAGGTACCCAGTTTGACGGCCCTCTTAAACCTCACGTTGACGTTAGCTTCCGATTGGCGTACACTGGGGTGCGGCAGAAGATGAGGAGGTGGAAGATGGATCGCGACAAAGCATGGACTGTGGAGGCCGTGGCGGAAAGATTGGGCATCACGCCGCGCACACTCCATTATTATGAAGAGAAGGGTCTCATTCCTGAGGTTCCGCGAACACCGGGCGGACACCGAGTCTATGACGAAGACACCATTGAACGCATCGAACACATTCTTCGCCTCAAGGAAGCCCTGGGCTATTCGCTGCAAGAGATTCGGTCCATTCTCTCCACAGAAGACCAGTTGAAGGCATATCGGGCGCGCATCGCAGAAGGTCACGAGCCCGAACACAACGTGCAAATGCTTTCGGAATCGGTGCGCTTGCTTGAGGACGTGGTTCGCCACATCGACGAAAAGATGTTGAGACTTGGGTCCATGCGCGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.00,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 2733234-2733559 **** Predicted by CRISPRDetect 2.4 *** >NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 2733234 38 100.0 35 ...................................... CATTGCAAGAATCACCCAATCGTTTTGAGCGCAAA 2733307 38 97.4 34 T..................................... TCGGATCGAGATGCGCTTCGCGCGCGAAGGACCG 2733379 38 100.0 33 ...................................... ATGCACCGTCTCGAAACCTCGACGTTCACTCAC 2733450 38 100.0 34 ...................................... ATATCATCCGCCAGGAACGCGAACATATCATCCT 2733522 38 89.5 0 G...................T.............GT.. | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 97.4 34 CGTTGTTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Left flank : AGATGACCATTTGTGGTCAGCTCGTTATCCAGAAAGGTTTGCTCAACGTGGATGAGCGCGCACTGTCTCGGACAGTAGGCGTAGTGTTGCAGAGCGGAAATGGGTATCAGCCATTCGTCGTCCTCCATCGCGAGTCCCTCCTCGTGCGCCTATCGTCTTCTTTGATAGACACAGTATTGCCGTTTGCAAGCGGGGACATACCCGTTCAGTGGTCACGACTGGCACACCCGAAGACATGGATTACAAAACAATGCATGTAAGGGTGGTGAATGACGTGAGGTGAATAAGCGGACCCTATGAAGCGAGAACGTTCCGCGAACCTGGATCGATGGCGAAAACCCCGGAGGTTCGCGATTTCCACAAAACCCGCACCACATCTGGACTTTTGCGCAAGCACAAGGTATGATGGAAACGTCATGGTGGGAGGAAATGTAGCGGGCACAAAGAGGTTCGCGATTTTCGCCCGGCAAGCCGCGCCAGAAGCGGACTCGTAGCGGAAA # Right flank : CGCCCGCCGACCGCCTCAACCACCTCGTGAGCCCCCGCCCCATCTAAAAAGGCCGCTCCGCATCGGAACGGCCTTTCTGTGCAAACCCATCTCACCGATAGACGTCTCCCCCGCCGGCCCGGAACGCCTCCGCCTTCTCGCGCATGCCTTCGGCAATCGCCTCCTCAAGCGCAAGCCCGCGCTCTTGTGCGTACGCGCGTATGTCCTGCGTGATCCGCATGCTGCAAAACTTCGGCCCGCACATGGAGCAGAAGTGCGCGGTCTTCGCGGGCTCCGCCGGCAGCGTCTCGTCGTGAAAGCTTTCGGCCCTGACGGGATCGAGCGCGAGATGAAATTGATCGCGCCAGCGGAATTCAAACCTCGCCTTGGACAGCGCGTCGTCCCAGTGCTGCGCCCGCGGGTGGCCCTTCGCCACGTCGGCGGCGTGCGCGGCGATTTTATACGCGATCACGCCCTCCTTCACATCGTCTCGGTTCGGCAGCCCAAGGTGTTCCTTCGGT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGTTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 4 2946296-2945305 **** Predicted by CRISPRDetect 2.4 *** >NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2946295 36 91.7 38 TC.....A............................ GACCGCTACTGTCGACGGTGCCGAAACAAGCCCACTAG 2946221 36 100.0 36 .................................... AGGAATCCATATATGCTGATTAATGTGACGCTCGCG 2946149 36 100.0 36 .................................... GGTTGGGCTGCGTCGCTTATGCTGGCGCGGCCCCTG 2946077 36 100.0 37 .................................... GGTTAGGGAATGATCCGATTATAGGATCAGTTCTAAT 2946004 36 100.0 37 .................................... GGGTTTGGCTTAGCGCTTACGTTTCGCACGACGCATC 2945931 36 100.0 37 .................................... TTGGGCCGCGACGAAACCTGCGGCGTGTCGGAAACGC 2945858 36 100.0 39 .................................... CGCCTGGTCGGCCACCGACTGAAACACGCTACCATAGTC 2945783 36 100.0 38 .................................... TGTGATTGGTACAACAAAGCGAATGTTTGACATGGATC 2945709 36 100.0 40 .................................... TCCGCGTCGTGATTTTATCGGCGTATTCCAGTGCGGCACC 2945633 36 100.0 36 .................................... GTGAACCCGCTGTCGCGGTTGTGGATGATGTTGTGC 2945561 36 100.0 36 .................................... CATGCTGCCGAACGCGCCGACGATCTTGGAGGATTC 2945489 36 100.0 39 .................................... ATCCAGCCGGTCACCGCTTCGTACACCATTTGGGCCATC 2945414 36 100.0 38 .................................... CCACGCGACCATTCTCCTCAAACTTGGCGTACATCCGC 2945340 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 99.4 38 CTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Left flank : ACCTGCGGGCGGAGCTATCACACCTGCACTTGCAGGTGAACGATTTGTGATGCGTGGGAAATCCGGGAACAGAACGGGCAGAAGCCGGCTAGGATGCGACTAGGCGCTAAGCTGCAGTTCAAATCGCAAACCGTGTGCGGGACACTTCACTGGCTATCCTTGAAATACGCAATGAGATATCTGATCAATGCGTACACGGCACCTATGCATACGGCTGCCAATATAGATTCCAGTGTCCAAAGCAGAATGAAGCTCAGAACTTTCTGATGACGAATCCATGGTATCAATTGTGTGCCGCCGAACGCCATTCCCGACAGAAACGCGATCCACCGCAGTTTATCGATCAATGCCAGGTATTTCACGGCTTCCGGTGGATTAGGCTTCGTGATCTTGGATAACCATTTCACGTTCTCCGTGACCCCACCTCTGGCGCAAACGCCGACTCCTACATCCGCAACAGGAGACCGGAATCACCAACCGGGTATTTCCGCGTTCAAAGG # Right flank : GCTACCCTCCAGAGCCGGCTCCTGGCGCGGCTTCCTGGGCGTAAATCGCGAACCCATGCGGCGCGCGCCCTTCACACGCCTTCCAACTGCCCTCATCATACCCTCTCACCGGCCAAAAATCCAGTCTCCATGCGCATTTTTCGTCTTGCGCGAACCTCCAGGGCTTTCGCCATCGATCCCGGTTCGCGCATCGCTCGGTTGCGTACCGTGCGCACACGCATGTCACTCGACGCTCGTTTCGTACAGAATCGATGCAGGATTCCCTGAATTCAGGTCGAACTTCTACCTCCATCGCTTTAGCACCGCAGTGGTGCAGGCGAGCTCCCGAAACGCCCCCGCTGCCCCCGCGGCCGCCGTGCAGTCGAGCTGTCCTCAGCCGTCACGGTCTCCGCGACGGCTGAGCCACCTGATCAAATCCCGTCGCCATGACCACCGCGACACCCCGGGCGGGTTGCACAGGGATCGCTCGGCACGAAAGGGTGATGTTTCGCCACACGTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //