Array 1 53506-54631 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIP01000010.1 Salmonella enterica subsp. enterica serovar 4,[5],12:r:- strain BCW_2051 NODE_10_length_178921_cov_0.144909, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53506 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 53567 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 53628 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 53689 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 53750 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 53811 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 53872 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 53933 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 53994 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 54055 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 54116 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 54177 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 54238 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 54299 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 54360 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 54421 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 54482 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 54543 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 54604 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70889-72552 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIP01000010.1 Salmonella enterica subsp. enterica serovar 4,[5],12:r:- strain BCW_2051 NODE_10_length_178921_cov_0.144909, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 70889 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 70950 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 71011 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 71072 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 71139 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 71200 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 71261 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 71322 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 71383 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 71444 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 71505 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 71566 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 71627 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 71688 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 71749 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 71810 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 71871 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 71932 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 71993 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 72096 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 72157 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 72218 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 72279 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 72340 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 72401 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 72462 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 72523 29 96.6 0 A............................ | A [72549] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //