Array 1 1304554-1304078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011266.1 Methanobrevibacter millerae strain SM9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1304553 37 97.3 37 ..........G.......................... TCTTTTCCGGGTTCCTCAGCTGAATATGCGAAGTCCC 1304479 37 100.0 37 ..................................... CTCCATCTGGATTTCTTTTCCATGCAGCTTTTAATTC 1304405 37 100.0 35 ..................................... TCATACAATTGTGTTGCATCCATTGGAGTTTCATT 1304333 37 100.0 36 ..................................... ATATAACTTCATCGATTAAATCGATATATTCATCAT 1304260 37 100.0 36 ..................................... TCATTCATGTTGTTTATTTCCAGTTCTAATCCTTTG 1304187 37 100.0 36 ..................................... TTCACCAAAAGCACCATATCTTCTATCGGATATGAA 1304114 37 91.9 0 ........................T.........A.A | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.5 36 ATTGCAAAGATTATTCTATTAAAACAAGGATTGTGAC # Left flank : GAAGGTAAGATTTATATTCATGAATCATGCAGAAAATTACTCATCAAAACAATACTTGATAAACTCAATAATGAAATAACTTTAATGGAATTAAAACTACTTATGTAGATTTAATATCTATTGAATCAAAAAATATTGTAGATTATTTATTATATTTAAAGGAATATAAAACATTTTATTTAAGATGGTGAATTTCGCAAATCACCTAATTTTTTTAATTTTTCTAATATTTTTTAAAATTTGTTAAAATAATTATTCATTTTAAAATTGGATATTTTTAAAATAAATCGATAATACTATTTATTTTTATAAATAAGATTTTTATTTTATTTAAATTTTCTTTTTTTGATTTATTTGGTGTTATTAGAATGCAATAATTATTTATATCATGTGCGCATATCTTTATATATGGTACTTAATATTTTTAATCTGCGAAAAAGTACCCTATGTCAAACAATTCTTTGCAAGTTATTGGGTATTTTGAAAGAATTTGACACCCT # Right flank : GTTTTATCTATTTAGATTACTATGATTTCAAATGTATTCTACTAAAAAAAGATCATATAAAAAAAGTAATGGTGGTGACAGTTAAAAATGGTGTTTATTCATCATCCAGATTAAAGAATTCATCATTTTCATGTGCTTTAAGCAGTTCTTCGATTTCTTCTTGAGTAAGTACTTTAGCTATTACTGAATCGTTTGCAATAAACTTTACTTCAGCAAAACTTACATCAGCTATTTTATCATATATTCTTCCTGCACTCATTGTTCCTTTTATTACAGTTGTTGTGCTGTTTGCAAGATAACCTGTTTTTCCGAATAGTTCAGTTCGCATTTTATTGCTTCTGTATCAAAGTCATTGTCAGGTTCCTTTATCAGTTTTACTATTGATCCGAGTTTGAATACTTGGTTTCCTTTATAGTTTTTTAGTCCTACTACTGTTGCAAATAAATCCTGTGTAACAATTTCACTCATCATTATCACATTATTTATATTTTGTGTTTATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAAGATTATTCTATTAAAACAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 1306672-1305831 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011266.1 Methanobrevibacter millerae strain SM9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 1306671 38 100.0 35 ...................................... GGGTACTCATCTTCCCGTCTATTTGGAGAGTATGA 1306598 38 97.4 35 C..................................... GTATATACATCATTAAAAGCCAATTTGCCATCTTC 1306525 38 100.0 34 ...................................... TTTAGCTCAGGGAAATATCTTTTAAGTTCTTTCA 1306453 38 100.0 34 ...................................... TCATTTATTTCGCAATAATTTACTGGAGCTAATT 1306381 38 100.0 35 ...................................... ATTTTTGCCCTTTCTAACTCTTGAGGGGTTTGAAC 1306308 38 100.0 35 ...................................... ATTTTTACTCCTTCCTTGTTTGCAAAGATTTCTAT 1306235 38 100.0 35 ...................................... ATCCACATTGGATTAGTTTTGATAATCCAATGTTT 1306162 38 100.0 36 ...................................... ATTATCTCTCCTAAAAAATTAAAAAGAACAGACTCC 1306088 38 97.4 36 ...........G.......................... ATTATCTCTCCTAAAAAATTAAAAAGAACAGACTCC 1306014 38 97.4 35 ...........G.......................... CATTGGAATGCGAAGTCTTGTGGTGCATATTTACC 1305941 38 94.7 35 C..........G.......................... GCATTTGGATAGTGTTCTTTTAATGCTGAAAATCT 1305868 38 89.5 0 A..........G......................CA.. | ========== ====== ====== ====== ====================================== ==================================== ================== 12 38 98.0 35 TATTGCAAAGATTATTCTATTAAAACAAGGATTGTGAC # Left flank : GAAGGTAAGATTTATATTCATGAATCATGTAGAAAATTACTCATCAAAACAATACTAGATAAACTCAATAATAAAATAACTTTTAATGGAATTAAAACTACTTATGTAAATTTAATATTTATAGAATCAAAAAATATTGTAGATTATTTATTATATTTAAAGAAATATAAAACATTTTATTTAAGATGGTGAATTTCGCAGATTACCCCATTTTTTTAATTATTCTAATATTTTTTAAAATTACTTGAAAATAATAATTCATTAAAAATTAGATATTTTTAAAATAAATCATTAATATTATTTATTTTTATAAATAACACATTTATATTATTTAAATTTTCTTTATTTGATTTATTTACGAGTATTATAATGCAATAACTATTTATATTATGTGCGCATATCTTTATATATGGTACTTAATATTTTTAATCTGCGAAAAAGTATCATATGTCAAACAAATCTTTGCAAGTTATTGGGTATTTTGAAAGAATTTGACACCC # Right flank : TAAAATTTTGTTTTGATTTGGGTTATATGGTCTTAATTACAAAAAATTCCATTAAAACAAGGATTTTATAAAAAAGTAATGGTGGTGACAGTTAAAAATAGTGTTTATTCATCTTCCAGATTAAATTCATCGTTTTCATGTGCTTTAAGCAGTTCTTCTATTTCTTCTTGAGTAAGCACTTTAGCTATTACTGAATCGTTTGCAATAAACTTTACTTCAGCAAAGCTTACATCATCTATTTTATCATATATTCTTCCCGCACTCATTGTGCCTTTTATCACTGTTGTTGTGCTGTTTGCAAGATAAACCTGTTTTTCCGATATAGTTCAGTTCGCATTTTATTGCTTCTGTATCAAAGTTATTGTCAAGTTCTTTTATCAGTTTTATTTTTTAAGGTTTAGTTTATTTATCTAACAAAATAATAAAAATTCACAGATATTTTTTCGAATAGAATGAATAGCATCACATGAATATTGGATTGGATTTAGATATTTAATTGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTGCAAAGATTATTCTATTAAAACAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 1358349-1356865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011266.1 Methanobrevibacter millerae strain SM9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1358348 37 100.0 36 ..................................... TCATTTTCCTCCTTAATTATTTTTATAATTTCTTTT 1358275 37 100.0 35 ..................................... CTTTTATGCCTATTATCATTTCTAATTCCAATTTT 1358203 37 100.0 36 ..................................... AACTCTTCTGACTCACTTAATTTGTCAGTATATAAG 1358130 37 100.0 35 ..................................... TTGTTTTTCCGTTTTCTTCAAATATGTATTCTAAA 1358058 37 100.0 35 ..................................... ATATCTAGGAAACTGTAGAATCTGAATGTTGCTTC 1357986 37 100.0 37 ..................................... ATATTTGACAACTCAAAATACATTATAGACTCATTGT 1357912 37 100.0 36 ..................................... TGCTTTGCATCTTTGTTTTCGATATTTAATACATTC 1357839 37 100.0 36 ..................................... CTTCTTTTCCTTTGATGAATACTATTTCTTGCTGAA 1357766 37 100.0 34 ..................................... ACTTTCCGCAATGGTGACATCATGGCAGATTGTC 1357695 37 100.0 36 ..................................... CAATTATCTTCTTTTCCTTTTTTTGTAATTGTATAG 1357622 37 100.0 35 ..................................... TTAAAGCGTGGTCTTGCTTACACTCCTGCTGATGA 1357550 37 100.0 36 ..................................... TCAATCATAAAAGGATATTCTGCGATGTTATGCTTT 1357477 37 100.0 37 ..................................... CAATCTATCATTATCATTAAATATCATATCAAATATC 1357403 37 100.0 36 ..................................... AGATATTGTCTGTTTAAATGAATGTGCATACTTGTT 1357330 37 100.0 30 ..................................... CTGTTGTCTTAAATGCTTTTTGAACTTCTG 1357263 37 100.0 36 ..................................... TCCCTTAGTTTAACATGACCATAATTCGTTGTTGAT 1357190 37 100.0 36 ..................................... TCCTCTTTCAAAACCTTGATGGTTTTCTTTTTAGGT 1357117 37 100.0 35 ..................................... GACTTCTTCAAGGTCTCCAAAATTGTGGAATTTAT 1357045 37 100.0 36 ..................................... TTTGTTATGTTTTTTGTTAGTCCATGTCTTTTCATT 1356972 36 94.6 35 .........-..........................T GCCTGTTGCTTGAATGTATTCTTGAATGTCTTCAA 1356901 37 75.7 0 .......................TG..A..AA.CACA | ========== ====== ====== ====== ===================================== ===================================== ================== 21 37 98.6 35 ATTGCAAAGGTTATTCTATTAAAACAAGGATTGTGAC # Left flank : AAAGATTTGTGGAAAGTGATTTTTTAATCACTTTTTATAAATTTAAAATATTTTATTTAAAAACGGATATTTTGTTTAAAAAAACAATATATTCAAAATAAATAATTATAACTTTATTTTTTTTAATTTAAGGATATTAAGTGATATTTAATATATTTAATCAACATAAACTTTTTTATTAAAAATGGTCGTTTGAGCAAACCTCCATTTTTTTAAAGATTTTTTTAAAAATTCAATTTTTTGATGAAAAAATTTTCTTTTAAATTTTCATTTATATTTAAAAATATTGTTTATTTGTTTTTTATTTGTAATTATATACAATAATTTTAATTAAATAATATTTTTAAGAATAAAGTGTTAAAATTTCTATTCAATAATTATTTATATTAAGTGAGCAAACCTTTATATATAGTACTTATATTTTTAGGTTTGCTCATAAGTGCTGTATGTCGCAGTAATTTTTGCAAGTTGTAGGTTATTTAAAGGAAATTTTCCACCCT # Right flank : TTCAAAGTCATGGCACTCTTTTTCATGTTTTAAGAAAATCCGTTGTATTTATAGATATTAGGGTGATAGATATAATTATGAAAATAGTAGATAAATTAAACTGGGAAGATAAATTTTCAAATGAAGTTATTAATCAATCCTTTTGGTATATGAACTCTATTGTAGAAGTTATTATAAGTGAAGGTTACATAAATGCAAATCTTCAAAAATCAACACATTTTCATGTTAGTATACATATAAAAGATAATGAAATCACTTACATGTTCTGCACTTGTGGAAAAGACAATTGCAAGCATCAGGCTGCTGTTTTAAGATATGTTGAAGAAAATAACCTCCTGGAAAAGGAAAGTGATTTTCTGGATTTGATTAAAACTGTGGATGATAATCATTTGAGGGAGTATTTCATTAATGTTTTAAATGAAGATCCGGTACTTAAAGAAGATTTTATTCGCAAATTTAAAAAGGAACCTAAAATTGACTCAAAACCATATTTTGATAAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAAGGTTATTCTATTAAAACAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //