Array 1 4672-4458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRY010000010.1 Nocardia terpenica strain N-38 NODE_10_length_308321_cov_36.084207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4671 29 100.0 33 ............................. GCCGGTTGAAGATCACCAGGCGGGTTCCCTCCA 4609 29 100.0 32 ............................. CGGTGCTGGGCGGCGGCGCGGTCGATGGCATC 4548 29 89.7 33 ..............T............TT GGTTCGTACTGGGGTTCCCATCTGGATCAGCTT 4486 29 89.7 0 ............T...T..........A. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.8 33 GTGCTCCCCGCACGCGCGGGGATGAGCCC # Left flank : CGTGCTGACCGAGCCGACGGTCTCTGTCAAGGACGCGGCCCGAGCCCTCGGCGTCGGTCGGTCCACCCTCTACGCCGCAGTGAAATCAGGCGAGGTACCAGCCATCCGAGTTCGCAACCGGTTACGAATCCCGTCGAACTGGGTGTGCCACATGCTGTATCTCGACGCTGACCCGGGCGGCGGCGCGCCGGAACGATCTCATGGGTAACTTTCGCTGCGGGTTCTGTCTCGATAGGAACCCGCAGGGAGCGCCGAAGTCCCGGGAGCAGTTACGATTCCAGGTCGCCGATGATTGCGGCCCTGGTGCGTCGAGGGATGTCGGCGTGACGCCGACCTTCGAACATCAGGGGCGATGGTAGCCAGGGCAATCCTTCGCGATCAGCTTGTGGTCTCGCAGGAAGCGGCAGGCTACCGTCAAGCGGGCGGGCGAACAGGTTGGAGAGCGATCGAAAGTGAATGAAATTCCGGCCAACCGCCGTGATCGTCGCAGGTCGGCAAGA # Right flank : CGTGGGCCACCGCATAACCGGCGGTATCGTCGTGCCCCTACACGCGCTGGCGCGAGGATGAGGCGTTCGAGATTCGGAAGCTGCGGTCGCTGCTACATCATCTGACGGAGTCCCGGCCATCTCGATATTCGTTGTAGAAGTTCAACGATGGGAGGGTCAGGACGCCACCTCGGTAGCTGGTGAGGATGTTGGTCAGATCTGCTTTGGCGGTTCCGTCGTTGGTTTCGCCTGAGTCGACGACCGCCACGATGTCCTTGAGGTGGTTGTCGGGTCCGAAAAGGTAGTTGTAGCGGGGGTTGTGCTCGATGGTGCCGTCGTGGTTCTGGAGGGCTTTGACTAGGTCGAGGTCTGGTTGGTAGAAGCCGGTTAGGGAGTAGTTGATGTAGGGCTGTTCGTGTTTGGTGGTGTCGGTGGGGGGAGAGTCGCCGAATTTGTCGTGGGTCCGGTCGTCGGCTTCGGTGGTGAGGGCGCGGTCGAGGATGTGGCGGAGGATGCCGTAT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46265-46596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRY010000006.1 Nocardia terpenica strain N-38 NODE_6_length_474008_cov_38.853031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46265 28 96.4 33 ..............T............. GTCCGGGTACACCTCCATGTCGGCGAGGATCCG 46326 28 100.0 33 ............................ GCCGCGGATGGTGTTCTGGCCCGCCGCGCTGCG 46387 28 100.0 33 ............................ GAGTTCGTGACGGCCTACGGCGACCGGTCGGAG 46448 28 96.4 33 .................T.......... GCTGGGCGAGCTGTCGGCGCAGTTCCAGGACCG 46509 28 100.0 33 ............................ CCGCCCGACCGCATGCCCGCGCTCGGCATGGTG 46570 27 85.7 0 ....................A.-C...T | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTCTTCCCCACGCACGTGGGGGTGCACC # Left flank : GTCGCACTCGCCCACCACCTCGCCATCCCCCTCATCCCGATCGCCGCCTCCGGCGGCACCGCCGAACAGACCTGGCGCGACATCCGCACCGACATCGTCGGAACGCCTCTCGCCGCCGACTTCGACAACCTCTGCAGTCCCGACCCGACGATCGTCATCGACGCCGCGGTACGGCTTCTTGCCCGCTATCTCGATCTACCGCACTAAGTGCCTATGAACCTGACTGCACCACAACCAACGTCAGAGTATCGGTGCCCACAATGTGCGAGTTCGCATAACCGCGTCGCCGCGAACGCTGTCGTAGCGGATGCACCGACGGTGCACATTCAGCCCGACCGAGATCATGCCGGACTGTGTCCGGATAGCATGGCTGAACCGTGAGGGCCCAGCCAGAATTCGCCCGGCACCGCCCACGATTTATCAGCAAAGCCGCACTGTCATATACGGTCACAGATGACCAACGGAGGCCCTACGCCCGACAAAACTGCTGTTCGGAAAGT # Right flank : TGTTGACAGCGAACCGAGAAACCCTCTGCGGCGGCAGGTTCTCCGCGCCTGGCGAAGAGCACGGCTGAGTGTGGTTGTGCCTCGATCGGATCAGATATTTGAGTTCTTCGCGACTCGACTCGCTGGTGTCGGAGCCTGATTAGAAGTCGGCGTCTATGTCGTCGGTTTCCGGCTCTTCCAGCGGTAGGAACCGAACCAGTTGCAGCCCGTCGAAGTCGGCGACGCGGCGGTGGCGTTCTCCAGCGGTCTTGATGCTGAAGCCCTGTTCGTTGGAGGCGGGGTGGATGCAGACGGCTTCGCCGCCGCCGACGGAGTCTGCGACAGCATCCCATAGCTCGTCTCGGACCTTGGCGGACACCGTGCCGACGTAAAGTCCAGCGGTCGGTTCGATCAGCCAGCGCGACAGCGCGCCCCGGACGTGGTCGGGAACCACGGTTGTGGAGATGACGAGGATGTTCGCCATCAGAACTCCGGGTCGAGGTCGCTGCCGTAGTTGACGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.70,-11.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 292850-292640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRY010000009.1 Nocardia terpenica strain N-38 NODE_9_length_311318_cov_33.210996, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 292849 28 100.0 33 ............................ CATCCCACCAGCGCGAACTACCGATGTGTTCCG 292788 28 100.0 33 ............................ CGCTGCTGGCTGTGCGAGGAACGGCGCACCTGC 292727 28 96.4 33 ..........T................. CCTGCGCGACACGGTGGTGACGGAGGTTGCCGG 292666 27 85.7 0 ........T...T.......-....T.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : TCTGGGACACCGACGTCGTCGAGCTGTGGGACCGCAAAGGCAATGTCGCCGCAGGCATCTCCTACGACGACGAGGAATTGCCGTGGTAGTAATCGTCCTCACCGCGTGCCCGGCAGGACTACGCGGACACCTGACCCGGTGGCTACTCGAAATCAGTCCCGGTGTCTACGTCGGCATCCTCACCACACGCGTCCGGGAACTGGCCTGGCAGCGAGTTGTGGACCTGTCCCGTGACGGCCGCGCGATCATGATCTACTCCACCCGCTCGGAACAGCGCCTCGCGTTCAAGGTCCACTGCCATGACTGGGAACCGGTCGACATCGACGGCATCCACTTGATGCGCCGCCCTCACACCGCCGACCGCGCGCTCGGCGGGGCGCGACCGGGCTGGAGCAAAGCGAGCCGATACCGCAAAGCCGCGCGACAGCCAAACAGTCGCTCTACGACTGAAAGTGAATGAAATTCCGGACTTTGGCCACGAACACCGCAGGTCAGCAAGT # Right flank : TAATGACGAGATTTTATTCTCGGACCGTTGGCGGAAACGTTGCGACGGTAGCCGATTTAGGTAAGCATGTCGGGGGCTTACGCGCGTTGGCACTCTCGTTGCTGTGGTGATCTCAAGGCATCTCCGCTCGTATCTAATGGCGGCTGTCTGCTTTTGATGTTGGCTGGGTCGACACGTTGGTGTCCGTCTCCGATGCGCGTGGGACGGTTCGCATTCGGGCCCTGGGGCTGGCTGGTTGTCTGGCTTACAGTTCGAGTGTGGTGCCGGGGTTGAGTATCTCGATCGTAGTGTCGACTTCGGGAGTGTCGAACGTGTCGGCGTGGTGTGCTTGGGAACGTAGCTGGTCTTCGTGTGTTTGTTGTTGGGTGGTGAGGTGTGTTCGGCGGTGTTGTTCGGCACGCAGGGTGTCGAGTTGGTGTTGGAAGTATTCGGTCAGGTCGTCTGGTGGGGTGGGGTCGTAGTGACGGACGCCGTCGGTGTATGTCGGGGCGGGGCCGAAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 303037-302063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRY010000009.1 Nocardia terpenica strain N-38 NODE_9_length_311318_cov_33.210996, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 303036 28 100.0 33 ............................ CAACGATCGCGCCTCCGGGCGAACGCTGCTGGG 302975 28 100.0 33 ............................ CCAGTTCAACATCCGCTGGGAAGAGCACTCCCA 302914 28 100.0 33 ............................ CAGCCATGCGATCCAGGTGACGGCGCGGATGGC 302853 28 89.3 0 .....................G..CT.. - Deletion [302826] 302825 21 71.4 33 -------..............G...... CAGGCCGGTGTCGGGCTGGGCGATGGCTTCGCG 302771 28 96.4 33 .....................G...... CAGGCCGGTGTCGGGCTGGGCGATGGCTTCGCG 302710 28 96.4 33 ...............A............ CACGCAAATGGCCCACACGATCAACCGGAACGC 302649 28 100.0 33 ............................ CAGTTCGGCCTCGTACTCGATCTGCTAGTCGTA 302588 28 96.4 33 .........................A.. CGGTGTGGCGCGCCTTACCTGCCGATGCAACTC 302527 26 89.3 33 ...........--............A.. CTATTGGCGCACAACCGGCGTCGGCGGCCACAA 302468 26 92.9 33 ................--.......... CCATGCTGCGGAAGCACACAACGCGAATCCGCC 302409 28 92.9 32 ..........T.T............... CGCCGAAATATCTGGCGGCGGACAGTCTTCCG 302349 27 82.1 52 ........T......A....A...-..T CTTTGCGCGGGGATGAGCCCCTGCGAGCCTTCGCAGGCCGCCGCTGGCAGCA 302270 26 92.9 32 ................--.......... GAGCAGTACTTCACCGACCTGCAGGCGATGCT 302212 28 82.1 93 ............TT.AT.......T... CCGCCGAAATGTCCGGCGGCGGACAGTCTTCCGGCGTTCCCCATACGCATTGGAATGGCTCTTCATGCAGGGATGCAGCGGCCCTACTGCTGA 302091 28 75.0 0 ..........TGT.........AAT..G | C [302081] ========== ====== ====== ====== ============================ ============================================================================================= ================== 16 28 91.1 36 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : TCACCATGTCGGCAGCCGACTGGTCGGCCTTCCTTGGTGCAGCAACCGCAGGCATCCACATAACGCAGCACGATCTCCCTACCATTGAGCGCGCCGACACCGGCGAAGTAAGCCTGCGCGCGGCGGACGGGACGGTCCTCACCTACACCGCCGCCGAGTGGCTCGCCTTCACCTCGGGCGTGCGAGACGGAGAGTTCGCTGCCGCCTGACCGGAAAGCTGTTGGCCTGTAGGGAGTCTGGGAAGTCGTGGCCAGGTCTTGGAATAATGGCTACGACTTGGCCAGAGTTGGCCGTAATTTTGAGATTCGTCCTTGAGCTGTGGCGTTGGCCGTGCTGAGACCGGGCGGAGGTTCGTTTCTGCCGCTCGGCTGCTGGTAGCCGAGCGTCACCGAAATGGTTTGGGGCGGACGACCGCTAGGAGGACCAGGAGAGATGTTGGGAGGCAATTGAAACTGAATGAAATTCGGGCTGACTGCGGTCATCGGTGCTGGTCAGGAAGT # Right flank : TGAGATCTATCGCTGCGGCCGAGGTGCTCCTTGCTTGTGCCGGGATGGGTTATGAAGGGTTGGCCGCGCATGGTCTGTTGGTGTGCGTAGGACTGGACGGTCGTGTCCATTGGTTGGTTGTAGTGTCGAGTGTTGCTGGCGTGTCGGTGATTTGGGGTGCACTTGCCAGTTCGTGAGTGTGTGTCGGTGGGGCGTTGTACTCTGCTGCCGTCCTGAGCTGTTCGGCGGTCATGTCGTGTTTGGGGGTCTTGCTTGTTGTCGGATGCGACGTTGTCGGCGTGGGCGAAGAGTGACCGTGACGGTGGGAGTTTGTCGCTGGTGCGGCATCTTGCTGATTCGGTGGCGGTGGCTGGGTTGGTGTGGGATCGGTGGTTGCCGGAGCGGACGAGGGAAGTGGTATCGGCTTGTCTGCCTGGGGGTTCGGCGGATGGGCGGCTGCTGGTGCGGTGGTTGGCGGGGGTGCATGATATCGGGAAATTGACTCCGGCGTTCGCGTGCCA # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1101526-1101931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRY010000001.1 Nocardia terpenica strain N-38 NODE_1_length_1145567_cov_40.862718, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1101526 37 100.0 36 ..................................... GTCACCGTCGCCCACCACCGTCAAGTGGTCGCCCTG 1101599 37 100.0 35 ..................................... CCTGATGGCGCGGGAGATGGTTTCGCGGCGCGGTT 1101671 37 100.0 36 ..................................... CAATCCGGTGCGGGCTACGGGGATGGGCTGGTCCAA 1101744 37 97.3 36 ......................G.............. ACCTCGTAGGCGATATAGGCCGCCGCCAGCGCGCAG 1101817 37 89.2 39 ....................A.G.....C....G... ACAAATACGGGCATCAGCGCGACTGCGGTTGCTGTCGTT CC [1101837] 1101895 37 73.0 0 ...A.....G......C...CC.TT.C...C.....T | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 93.2 37 GTGGCGGTCACTCGTGAGGGTGACCGAGGATCGAAAC # Left flank : TGATGACCAGGTCGCGACCCGTATTGGGGGCACGCTCGGGCCCGTCATTGCCGTTTGCCCTGCGTGTCCGGATTGAACACTCCGCCAGGACAGACCGGTAGGACCTCAACGCAATACGAGTTTTCCGTGACCATGCCGCGGCTGCTGGATTTCACCAAAACCGCGCTTGCCCCGTCAGATTCGGGCAACGGGCAGGACCTACTGACTGGTCGATCTAGACGGTACCGGTGTGGGTCAGCAACAGAGGGGCCGCGCTCGACGCTGGGTCGGGCAACACCCGCGCGGCCCTCTGATCTCACTTGGCCGCTCGATCCCGCAGCTTTTCGTGTAGGAGCTCTCTGCTGCACGGACATGCCGAGCGGGTAGCAGGTTGTGACCACCTCATATAAACGGCGACACGCCTGTAGGTTCCGAACTGCCGATGAGGGATTATAGAGTCGGTGGCCCGCGGTGCAGGCGGTCGATCGCGTGTGGAATAGCGAAAACCCAGGTGGAGTACT # Right flank : TCTGAATGGGGTTGGCGTTCCGCCGGTTTCGATGGTTATTCGGTTACTCACGACGGGTTCGTTGTCGGGTTCGGCGGCGCCACCACAGCAGCTCGAGGACCGCCATGGCTGCGTCTCGGCGGCTCTGTGACTTGGCGAAGATCGCGACCACCGAGGCCAGAGTGATGAGGAGCATGTAGACGACTCCGGCGGCGCCCCCGGCCGTGGCGACTCCTACGAGCCCCGGTACCCACGATGCGAGAGTCAAGTTGTCTCCGATAGCGCGTCGGTCTCTGCCGAGGGACGAGGTTAGCGGAGATCCGGAGCGCGCGTTGGGAGTTCGAGGAATCTCGCTAAAGACACCTTGGCGCTGCGAGACGCGCCTCTAAAGTTGTTACCGTGGCGATCGCGGCAGGACCGCGATCGAAGGGTCGAAACAGAGGCGCGACGTCGTTGGCGCCCAGGTGAGTGTAGTGGATTGGGAGGCGGCGAGCCTGCTGTCTCCCCAATCATCGGATGCA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACTCGTGAGGGTGACCGAGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1110235-1110785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRY010000001.1 Nocardia terpenica strain N-38 NODE_1_length_1145567_cov_40.862718, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1110235 37 100.0 35 ..................................... GGGAAAACCGGTGCTTCATGCTCTCCGCCGACGTG 1110307 37 100.0 37 ..................................... CCCCACTGCTGGCCTGGCCGCGACGATGATGAGCTGG 1110381 37 97.3 38 .......................T............. TACGACGCCGCGAACAGGTTGCACACCGCGGGATCGAA 1110456 37 97.3 36 ...............T..................... GTCCTGCTTGAGTTTCCTCGGCTGCCGAACACGAAG 1110529 37 94.6 37 ....T.......T........................ CAGCAGGTGGTCGCCAATGCCTATACCGACACGCAGC 1110603 37 94.6 36 ...................AC................ AACCTCGGCAACGTCGTGGGCGGCACCTGCAAGGCG 1110676 36 97.3 37 ................-.................... ACGAAAACCCTGAGCTAGGGAGCGCACGCCATGCAGA 1110749 37 97.3 0 ...................................C. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 97.3 37 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : CTTCTTCCCTCAGTCCAAGCACGACTCCTCGCCCGGCACCTGCGCGGAGAACTACCCACCTACCTGCCCTGGACGCTATAGATGGAACTCCTGGTCACCTACGACGTCTGCACCGCGACTCCTGAAGGGAAACGAAGGCTCCAGCATGTCGCGAAACTTTGCGAGGGCTACGGATTACGTGTCCAGAAATCCGTTTTCGAGATCGTCTGCACGGACGCTGAACTTCTCACCCTGACCGACAGCATCCACCGAATGATAGAGAACACCGAGGACAGCATCAGAATCTACCAAGTGCCCACAGGCTCGTTCAAGACCGTCCGCACCATTGGAACAGCCGAGCTATTGCCGCACCACGACCCGTTGATCCTCTAGTTCGGAACCGCCGATGCACATGAATTCCTAGAGAGGTTCACAACTGTCGAGCACCGTTTTGGTTGTAGGACCTCTCGAAAGAGGAGCTGATTGCATGGCCGAGATGGGATCAGTGCAGGTCGCGCACC # Right flank : CCCTGCCAGGGCGCGCGGGGTGTAGAAGGGTTCGCAGGTGGCGGTAGGTCATCACCTCCGGTTCGATAGAACGATCGGGATCCTGAAAAGAATTGGGGGAAGGAGCATTCGAATGATCAGCCTTCTGAGGCGACTGTGATCGGCCGTCGGCCTCGGGATCGGATCGGCCGATCGAACGTCCCGTCTGAGCGCCACCGGATCCCGGGCACTGCCGTCTGATCGCCACCGATCAGCGCGACTCCGAGTCGCGCCAGGCCGGTCTTCGCGAATCGGAGCAAGACCTCCACCAGCGCACGCTTCCAGAGCGGTCGACCTGCCGATCGATGCCGGCTTCGGCGAGTTTCGGTGCCGGTAGTCAGGATTCGAAGTCGAAACCGAGCTCGGCCGCGACGCGGCAGGCGCCCTCGGCGATAGATTCGCCGACCTCATCGGGGTGCATTCCGATCTGTAACGCGGTATCGAGAAGCTGCGTGAAGGCGTGCTCAGGGTCCGAACGCAGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //