Array 1 478634-479820 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPV01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-354 NODE_2_length_714367_cov_55.9904_ID_2513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 478634 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 478695 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 478756 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 478817 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 478878 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 478939 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 479000 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 479061 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 479122 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 479183 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 479244 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 479305 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 479366 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 479427 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 479488 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 479549 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 479610 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 479671 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 479732 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 479793 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 495991-497670 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPV01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-354 NODE_2_length_714367_cov_55.9904_ID_2513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 495991 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 496052 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 496113 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 496174 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 496235 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 496296 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 496357 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 496418 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 496479 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 496540 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 496601 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 496662 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 496724 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 496786 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 496847 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 496908 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 496969 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 497030 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 497091 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 497152 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 497213 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 497275 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 497336 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 497397 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 497458 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 497519 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 497580 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 497641 29 93.1 0 A..............A............. | A [497667] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //