Array 1 59244-61056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHO010000010.1 Clostridium perfringens strain 1805-50 NODE_10_length_65996_cov_63.6234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59244 36 86.1 29 A...C.TA..A......................... CAGCTGAAGAAAAAGAAGCCATAAGGCTT A,A [59246,59256] 59311 36 100.0 30 .................................... TAGTTGAAGTTCTTATACCATCTACAACAT 59377 36 100.0 30 .................................... TTACCATTTCCGTTATGAACTGAACTCCTT 59443 36 100.0 30 .................................... TCAGCGAACAACTTCAAGGGAATATAATTA 59509 36 100.0 30 .................................... GAAAAAATGAAAGAGGGCTTATATAAAATA 59575 36 100.0 30 .................................... CTTGGGGGTGGATTAAAAGCTCAAGATGCT 59641 36 100.0 30 .................................... GATTTATTAATTCTAGGCACACAATAGAAA 59707 36 100.0 30 .................................... TGCTGCACTAAATATTACCCCTCCAAGTCC 59773 36 100.0 29 .................................... AAAATGAAAGTATAAATTTAAATATTTAT 59838 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 59904 36 100.0 30 .................................... ATTTATTCTGATTAAACCCATCAAGGAATT 59970 36 100.0 29 .................................... GAAATGGGTTCTTTGTGTACTAAAATAAG 60035 36 100.0 30 .................................... CAACTTTAGACAAGGGCAAGTCATAAGCTT 60101 36 100.0 30 .................................... TCATGCAAAGATGAAAAGACAATAATTAGT 60167 36 100.0 30 .................................... TATCTATTAATGTTTGATAATTTAAAACTT 60233 36 100.0 29 .................................... TGCTTATAAGACAAGAAAGAAGAAAAGTA 60298 36 100.0 29 .................................... TGATGGTAAGTGGCAAAATATAAAAGATG 60363 36 100.0 30 .................................... TATGGAATGAATCCTAATTTCAATCCTAAC 60429 36 100.0 29 .................................... CTTCTAAAGCTCCTAAATTACTGTTAGCC 60494 36 100.0 30 .................................... CTTATCAAATGATTATCATATGAGAATACA 60560 36 100.0 30 .................................... CTCCAGTTTATTATTAATACCTCACCCCTT 60626 36 100.0 29 .................................... TTTAAAGCATCACTCCAACGCCCTTTTAT 60691 36 100.0 30 .................................... GCTGTTTAGATTATTGGTTGTGGGATGTTT 60757 36 100.0 30 .................................... GGCAACTCCTACATATTCCACTTGTACGCT 60823 36 100.0 30 .................................... ACAAAATGTATCAGAACGGCGAATTAGATG 60889 36 100.0 30 .................................... TATGTTTCTGTTGTTGAGTTTCAAAAAAGA 60955 36 100.0 30 .................................... AAGAAAAACAGCTGATAGTTTAGATAGTTG 61021 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.5 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGGTTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTCTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGTTTTATCTCTGGCAATTTTAATAATCTAAAATCTTTTTTACTACAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAACAGAATGATTTTTTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //