Array 1 146807-147933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQTP010000003.1 Corynebacterium diphtheriae bv. gravis strain 07-18 NODE_3_length_260141_cov_47.556101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146807 29 100.0 32 ............................. CCTTACTCCATCGCGTCGCCGCCGGTGAATCG 146868 29 100.0 32 ............................. AAGGTATTGGTGCTATGCGCTCGATCGGCGCC 146929 29 100.0 32 ............................. CACCTATCACGCGCTTTTTGGCCAGTCTGTGC 146990 29 100.0 32 ............................. GCTCAAAAGTCGGGGCTTGTCCTGTCGCTGGA 147051 29 100.0 32 ............................. GGGTCTGAAGCCATGAAATTTGAGGCCTTGAA 147112 28 93.1 32 ....................-.......G TCATTGAATGCCGACCAGGTACGACGTGGGCG 147172 29 96.6 32 ............................G CGGTAGGCCGGTTAGCCGCCGGTGCCGTCCTG 147233 29 100.0 32 ............................. TCAATAGTGAAACGCGCCGGTGATACTTACAC 147294 29 100.0 32 ............................. CCGCTCGCAAAAGCTCAGATCGTCGCAAATGT 147355 29 96.6 32 ............................T GACTGTCGGGCGCGTCCGCGTGAAGCATTATA 147416 29 100.0 33 ............................. TCCGGCGTCGGCTTTTCCAGCTCTGGCCTCGAA 147478 29 96.6 32 ............................G AAGGGGCAAGCAGGTGCGGTTACAGTAGCTGA 147539 29 96.6 32 ............................G CGCGCTGCGGTGCACCAAGAGCAGACGACCTG 147600 29 96.6 32 ............................G CTTCTGATCTTGCGGCGCTACGCCTACGGGTG 147661 29 100.0 32 ............................. CCGCGAGTCTATGTCAAAAGCAAAATTGATGC 147722 29 100.0 32 ............................. GGTTTTGATCGCCATTTCGCCAGCGCCCAACC 147783 29 96.6 32 ............................G AAAACCAATACTCCTACAGCTGGAACGACCAA 147844 29 93.1 32 .............T..............G TCATAATCAGCACTGTCAATCCTCATGTATTG 147905 29 93.1 0 ...........GT................ | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.8 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTTTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13794-12787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQTP010000008.1 Corynebacterium diphtheriae bv. gravis strain 07-18 NODE_8_length_108023_cov_46.982465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13793 29 100.0 32 ............................. AGGTTTGCTCCGAGCGTTCCCGGCAGTTTCGC 13732 29 100.0 32 ............................. GACGAAAGCCTATGTGGATGGCAAGATTCGTA 13671 29 100.0 33 ............................. TGCACCAGGCTCTCATATCGGAGGCAGAAGCAA 13609 29 100.0 32 ............................. ACCCGTAGGGGGTTTCGGGGGATTTTTTTTAG 13548 29 100.0 32 ............................. TCATCGACGAATCGCTGCGAGCGAACCGAGAA 13487 29 100.0 32 ............................. TCCGCTAAGCGCGTCACTGTCGTTTTTTCTGC 13426 29 100.0 32 ............................. GCCACACCATGCTGTTCCTTGAGCACTTAGCA 13365 29 100.0 33 ............................. TAGGTTGTCGGTGTCGCGGCGTCGGTTATCGCG 13303 29 100.0 32 ............................. TTCCAGTTGGCGTTCCGTAGGGTTGGCGCATG 13242 29 100.0 32 ............................. ATGTCTTCACACGCTATTCGCAGTGGGTGGGG 13181 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 13120 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 13059 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 12998 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 12937 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 12876 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 12815 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : GGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //