Array 1 17538-17768 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXZ01000143.1 Staphylococcus felis strain F20 k127_328, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 17538 36 86.1 29 ...C.......GC......A.....A.......... ATAAGCATGTGACTAAGAAAAGAGGAATA 17603 36 94.4 29 A........................A.......... AAGAAATGACGTTACCAGAGTTGATTGAG 17668 36 100.0 29 .................................... AGTAATTTCGCAAATGCAACTAAAAGTAC 17733 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 4 36 95.1 29 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTTATCGATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTATACAATTGATTAAAAGTTATCAACTTACAACCATTATAATTACAAATCATCCATCTATTATAATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATAAAAGATATAAAGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATACTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCACTGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : CTAGGGGGAACCAGTTCCCCCTACCCCCTTGTTTTAGAAC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.14%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-495 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXZ01000096.1 Staphylococcus felis strain F20 k127_219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... TATTCCATGTTTCTAAAGGATATCTATTAG 67 36 100.0 29 .................................... AAATATCTGACGACCTCGACTTCGGGGGT 132 36 100.0 30 .................................... TGGCGACACAAGACTCGAAATGTTTAAAAA 198 36 100.0 29 .................................... TAAATTTAAAAGAGTCAACAGTGAGTAGT 263 36 97.2 30 .........................A.......... CTTGTTTGTCATATTGTATATCTTGATGGC 329 36 97.2 30 .........................A.......... TGATCAAAACTGGTATACAGCAAACTGGTC 395 36 94.4 29 ..............G..........A.......... ACTAAGTCTTCATTAAATAAAAATCCGTT 460 36 97.2 0 .............A...................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.2 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : | # Right flank : GAAGGTGGAGAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //