Array 1 115488-114525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFH010000012.1 Bacillus thermophilus strain DSM 105453 Ga0454087_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 115487 30 100.0 37 .............................. GTTTAGGGAAATTATCGGAAGAATTCGAGACGGCATT 115420 30 100.0 37 .............................. GAGGGCGAGGAGAAATAGCGTATATCAACGGCACTTG 115353 30 100.0 38 .............................. GCTTTGAGGGGCTGGTAAGTACGTCCGACCCCGCCCTC 115285 30 100.0 37 .............................. ATCGTCGAAATGGATGGAGAGACAGTAGGCCGTATTG 115218 30 100.0 36 .............................. TTCCGGGAATCGCTTGAATTGGGCAGTAAAGCGTGG 115152 30 100.0 37 .............................. AGATCATTCATTTTATTCCCGATAAAATCGGGATTTT 115085 30 100.0 36 .............................. CGGGCTATTTTTTATGCGATTTAACAGGAATAACAC 115019 30 100.0 36 .............................. CGGGGAGCGGGTGACCGTCAAGGGTGAACAGGGCGG 114953 30 100.0 38 .............................. AGCGAAAGAGTGGCAATATCCACTGACTGCCCATCAGC 114885 30 100.0 37 .............................. TCGTAGGCCGTAGTGAAAGCACTAACAACACCGTCCC 114818 30 100.0 37 .............................. TGGTGAGTTAGTTTCACTTAGTAATAGAGTGGACAAT 114751 30 100.0 35 .............................. AATGCCAATAAAAAACAGAAATCCAGCTAAATATC 114686 30 100.0 35 .............................. CTAAAGGCGAGATTACAAACATAAGCGTGCAGCGA 114621 30 100.0 37 .............................. CTCAACGGAGCTGGCGGTCGAACTGTCGGCTGGCATT 114554 30 96.7 0 .....A........................ | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.8 37 GTTGACATCTTACCTAAGAGGAATTGAAAC # Left flank : AACCGCTGCATGCCTGGATGTTCCCGCATTCCGAGTAGTAGAAATCAAGGACGGCCAAGTGAATATCGACATGATTTCGATTGATGACGAGACGCTTATGGAGCAGATCGCGATTGTCAACACAAAAATACCAGGATTTGTCCCTATCGAGCAACCGCATGGAGAAGAATCCGACCGCAACTTGCTCGTAGAGATTCAAGAACCAGTTACAGAAACTGGGAAAGTGTTCTGAAAATCGTCTAGGAGTACTGTTGGCCAAAGAATGAGCAGCGATATATGACAAGCTTGATGTTGTATCATGAAAAAACACCCATTGTCGTCGATCCATCTCGTGACACCAAACCCGCGGGATCGACGACAAACCAACATGGGACAAAAGGCAGTAAACACAATGAAGCGAAGTTATTTGGAAATGAAGTGAAGCTATTTGTAAAAATAATTACTTTTTTTCGCGAAAGATGTGATATACAATAAGATGGTAAGAGCCATGTTGTTTGGGG # Right flank : CGTAAGATCCCCCAGGAAAGCGACCTTTGCTTTCCAAGGAAGCTGAGAGACCTGTGGAAAGCGAAATATGTTGACGTAGCGATGATAGGGATTTTTTTAACAAATAAACCGAACAATTATAAATGAATTGTACGGTCGTATTTGCTTATGTCCCAGCCCGTCCTTCCCCTTGGGTTTCCGTTGATCAGACGTGTATTTATAAAAATCAGGATGCTTGCCTATCATTCTATTGGAGTGATAGGTTTTTTATTGCGGAAATTTTTACTTACTCTTAACATAATTTTTATTTGGGATTTGAATTTTTGTTATATACTTTTGCTTTAAGGGATCATGATTGGATCTCGAAGCATTTTGTTTGAAACGATCATTCGTCTAAAAGGAAGGCACCATGCTATTATGCCGTATGACTAGATGCTTCAATTTTTATTTTCACTATCCTCCACGATCATGTGAGTCATTGGAAAATAGAAGAATCTTCTGTTAAAAATACTATGATAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATCTTACCTAAGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 125318-124745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFH010000012.1 Bacillus thermophilus strain DSM 105453 Ga0454087_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 125317 33 100.0 35 ................................. AACTCTATCATACCTTAAACTACCGTCAGCTTTGC 125249 33 100.0 34 ................................. ATTAAGTCGGAGCACAGTGTCGAAATCACGAAAG 125182 33 100.0 35 ................................. ATTTTATGAAACTATTCGAAAGTATTATCGATGTC 125114 33 100.0 33 ................................. GTCAAACTCGCCCGTTTCCTTGCCTGCATTCGC 125048 33 100.0 36 ................................. TAAAGAAATGTCTTGCCGGGATAGTGATTACCAATT 124979 33 100.0 33 ................................. TCGCTCTTGTTTCAAATGACTCGAATCATTTTT 124913 33 100.0 36 ................................. CTCCAACATCTTTTGGCTGCATGACTGATTTTGGTC 124844 33 100.0 34 ................................. TTTGATTTAAAGGAAATGTTTGGTCGTCCATCTC 124777 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 100.0 35 GTCGCACTCTATATGAGTGCGTGTTAATGGCAC # Left flank : CAGGAAGGTAGAACAAGATGGTATTCCTGAATTTGAGAAGGCTATCCGTACATTCAAAAACTGGCAGACAGAAGTACTAAACAGCTTTTTACTCAAATGGTTTTTTGGAGAGAATTAATAACCTAACGAAAGTCATGAAGAGGAACGCCTTTGGATTTAGGAACTTCCTAAGGGGAAGAGCAAGAATACTTCTTTTACATAAGTATAAAAAAATTGGAAGTCATGTTGGGTAAAGTGAGATTCTATCTCACCCCACTCCAACATTTGACATAGAACCATTTTAATTAAAAAGAGAAACGTCAGTTTGTATAAAATTGAACGTAAACTTTGCTGCGGACCCCAAGCGAACATAAAATCTCCGGGGGACCCGCACCAAAAAAACCCAGTATAATACGAAAATATATGGTAAAATTGAAAAGAAGATAGGCGAAATATCCCCAAAAACAGGTTATCCTACTAGATTTAGGGAATGATTTTCCTTTTATTAGGAGATTTTCGCT # Right flank : GTCGCATATTCTTTGTTTGTTGTGTGTATATTTCAGTGTCTTGTATTTTGTATTGTAGCTGTCGTAACGATAGAAATAAGAACGCACAAGGACATGTTGTAGTCGCGAAATTCCATTAAGGCCGATCATTTCCTCTTACTCGTGGTTATATGGGATGACACTCTGCATGTTCTTGATCCGCCAGTTGCTGACAGATTGGCTCAATATCATAGCCGGCATTGAACAGGCCTGTTACTTGCTCATTTTTCGATATTTGGAGAGGTACTCCTTTTTCTATCCTCGAACTTTTAAGGGCAAATGGTGACATTCATTCATTTATATGAAAGGGGGATTCTTCATATACTGCTCAACATGTTAACGCTTGTTTACTCGGAGTCTCTCGGTTAGCGATCATGTAAACAATATGAATCCACGCAAATTGTTGCTAGTGTTTGAAAATCGAACTTGGCTTTCTTTATCTAAAGATTGAAGTTTTTGTTTGTCGTAAATATCATATTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGTTAATGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 63044-66260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFH010000015.1 Bacillus thermophilus strain DSM 105453 Ga0454087_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 63044 30 100.0 36 .............................. ATAAACTCCCAGACCAGATTGACCATTTCCCTAAAC 63110 30 100.0 36 .............................. TGTTCGTATTCTTGGCGGCGGGCATAAGGTAACTCC 63176 30 100.0 37 .............................. TCGAATATATCGGTGTAGGTGACGATGATACGGACGA 63243 30 100.0 35 .............................. CCGGCTATTACTTCCGTTGCCATTTGCGCAATAGA 63308 30 100.0 37 .............................. TTAAAAAGCTTTACGATGGCAGCGGCCAGTATTATTT 63375 30 100.0 36 .............................. AAGAAGGTAGAATTTTACTTGCGGAATTTGGAGCAG 63441 30 100.0 38 .............................. ATGAACTACATTTCAAAACATCCCCCTCGTATATCTGT 63509 30 100.0 37 .............................. TGTCTAGTAGTACAGCATAAACAAAAAGGTCATGTAT 63576 30 100.0 36 .............................. ATAAAAAACAGCAGGCGTATGCAATCCGTGAAATCG 63642 30 100.0 38 .............................. TGTCGAGTAATTCCAGCGTCTCTTCTATTCCGAAAAGT 63710 30 100.0 37 .............................. ATCGACTAGTTGAGCTCTATGCTTCCGACACAAAAAT 63777 30 100.0 37 .............................. AACATACCAAGCCGAGTGTCACCGCCGCCAAATCCTT 63844 30 100.0 35 .............................. CCGTAATTTTCCGTTTTTGATGCACCACCGCAATA 63909 30 100.0 39 .............................. TCGGCCAAGACCCGCCAAAGTCTTAAAGCCTCCGCCTTC 63978 30 100.0 37 .............................. AGGGCAATACAACGTTACAATCACCTGCAAGTACGAC 64045 30 100.0 36 .............................. AATGCGTTAGCCAGCGAGGTTGCCAACGTAACCAAA 64111 30 100.0 37 .............................. CAGAAAGCGCCCGTCCTTTTCGGACTTATCGGAACGG 64178 30 100.0 35 .............................. GACTCTGCGCAGGTATTATCGAAAACACCGCGCGA 64243 30 100.0 36 .............................. GAACATGTAGACGCGCGGCACTTCGCCTTCGCCCAC 64309 30 100.0 36 .............................. GACGTATCGAGGACGTGATTGGCAGCGGCTAGAGGC 64375 30 100.0 36 .............................. CGGTGATAATCGTATGGTTTCCAGTATCGACGATAA 64441 30 100.0 36 .............................. GCTGATGCCCAGGGATTTTCTGCGGTTATCATGGCC 64507 30 100.0 37 .............................. TTGCTACGGGAGCCGTTAACAAGGAAACGGGTACGTT 64574 30 100.0 36 .............................. TAATGCCGAGAAGTCGCTACGAGAGGTGGTTCGGTG 64640 30 100.0 36 .............................. CGGAGAGGGAGAATATTATCCGGAAGGAGTAGACGA 64706 30 100.0 36 .............................. TTGCCCGGGATCCTGACAACCCTAACCTGGTCGTTA 64772 30 100.0 35 .............................. TTTTTCGATTAAGACGTTGAGCTGTTCGGCTAAAG 64837 30 100.0 36 .............................. TCAGCCAAGCGATTGTAGTGTAACCCACCCTAAACC 64903 30 100.0 37 .............................. CCGGACGAGCCTATCTATGATTTGGAATTTGCGTATA 64970 30 100.0 35 .............................. TAGAGCTTCTTCGTTTTCCACGAGTACTGCTAGAC 65035 30 100.0 38 .............................. TAGGAAATTGCCAAACACGACCGACGCAAGGAGGAAAA 65103 30 100.0 36 .............................. GGAGTTACAACTGTTGTAGCAGGATTGACAGCGGCG 65169 30 100.0 37 .............................. TCGTAATACAACCCTCGGACTGTATTACGTGCTAATC 65236 30 100.0 35 .............................. ATGGTCGTACATCTGTTACGTTGACAGCCCTAAAT 65301 30 100.0 35 .............................. ATACTTTGTCGGCCGTTGTCCTCGTTGTAATCGTC 65366 30 100.0 36 .............................. CAAAAGCCTTTACGAATTCATCGGACGTCATCCCCG 65432 30 100.0 36 .............................. AAGTATGTCGAACTTTTTTAACGCTCTAAAATCAAA 65498 30 100.0 37 .............................. TCAATAGCATCCTTAATACCGGGCAAGCCCGTGTTAT 65565 30 100.0 35 .............................. TCAATGAAGGTGATCTTTGGTTTAAAACCGTCGAT 65630 30 100.0 38 .............................. TTGTAAAATCGAACCTGTATATCTGATTGAGGTCTCCC 65698 30 100.0 37 .............................. TTCGCTGCCATTGCTTAATACCCCATTTGTAATCTTT 65765 30 100.0 35 .............................. AGTGGAATCTGGGAAGTTATCAAAGAGATTTATAA 65830 30 100.0 38 .............................. CGGGTTATAAAGGAACTGCTACCCAAAACACGGAACTT 65898 30 100.0 36 .............................. CCGTAAGCGTCTCTGCAATCGCGGACTTATATTCAT 65964 30 100.0 36 .............................. AGATAAAGAACGGGGAGGAATTAAAATGAAAAAGGT 66030 30 100.0 36 .............................. TGAGGATAGTCCACCCTACTAATAAATCCGATTTCC 66096 30 100.0 37 .............................. TTCCACAAAACCAAACTATGAGTGGTATGCAGTGGTG 66163 30 100.0 38 .............................. TGAGTATAAGTAGGAATCAGTGAATCGGGATCAACAGC 66231 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 49 30 100.0 36 GTTTGAATCTTACCTATGAGGAATTGAAAC # Left flank : TCAGTCGCTCGTTTATTCGACTCTCCCTCAACAAGAAGCTTCATATCTTCACGATCAAGGGTACCGCTACCATAACCGAACGTATAAACTATTTTGTTTTTCAAAAATAAAAGCCAAAAAGGCGACTTTTGACAATAGCACTAAAGAAATTACGTTTCATGACCAAATATCAATATCTATGGGGCAACAAATTTCGTATACAGGGATCGTTAAACTCTCTTACAACAAATGAATACAAGTTAATACACCCTTCATTTTTTGAGGTTAGTGTTGACATACCATGAAAGATAAATTATGGATTTTAAAAAAACTTAGATTTTATCCTGTAAACAGTTGTCGTCGATCTATCTCGTGACATCAACCCCAGGAGATCGACGACAAATCAAAACGGTACAAAAGCTAGAAAGCACCATTATTATGAGTCTATTTGGGGAAAACACCTTTCATTTTTATAAAATATGTGATATATAGTAATTGTGATAGAATCAATGTTTTTTGAG # Right flank : CATCTTAACAATAATCAAACAGCTTGTTTTTCCACTTTCCAAGATATATTTCACCATATTTATCATATGCAGTTATGGCAGAAAGGGCTCGTAATCTGGTAACTGGAAATGAGCTTTTATTTTTGCGATTAAAGTTTTATGCAAATTTTAGTCTCGTTTATCCACTTTGGTAAAGCATCTTTTATTCCCCGTTTTTTATCCTGCATACTTAGTTTCATAAGTTATCGCTGAAGCATATTTATTGCTTTCAGTTGTTCCTCTTTGTGCTGCTCGCTGATCTACTTGGAAATTTGTTTTCCTACCTCTTTCTTATCCATTTAACATTCCTTATGACAACTTAAATGACAATAGGTGCTGAAGGTAAAGCATAAGCTTGAAATTCAGATCCATTCAGGAACTGAAGCTGAGAAGGGTCTGTAATAAAGAAGGCCTATTGTATCGTGCCTTAAGAAATTGAGATTAGGTTGAGCCCCTTTGGTTTATTTGACTTTCATCTGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 75722-78937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFH010000015.1 Bacillus thermophilus strain DSM 105453 Ga0454087_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 75722 30 100.0 36 .............................. ATTGGTCAAAATGGTGTCCCGGCAACGCCTAATAGT 75788 30 100.0 37 .............................. AGACTTGTCAAGCCCTCCTCCCCATCAATCAGGAGCC 75855 30 100.0 38 .............................. TTGGGTCTTTTCCGGCATTGGCGTCCGGTTTCGGGGCA 75923 30 100.0 37 .............................. CCAGAACGGCATGGAATGGCACGGTCCAGCGCTTGCA 75990 30 100.0 37 .............................. GCGGCTATGATCGGCGTAGGTGCCGAGCCACCTGTCC 76057 30 100.0 36 .............................. CCAGCCCCTCAAAGCTAACCGTTTCAGTAATCTTTC 76123 30 100.0 38 .............................. GACCTCTATCCCGCAGACCATACGCTTTGACTAAATTG 76191 30 100.0 36 .............................. TCGGTTTTCAAATATATATAGCGCTACGTCTTTTGG 76257 30 100.0 36 .............................. CCGATGCATACAGAAATGAGACATGGGAGCCTCCAA 76323 30 100.0 37 .............................. GTCGATCCTATCTATCTAATGGACTTCGAAAATAACA 76390 30 100.0 39 .............................. ATGAGCGCGCAAGTTGAACGGCAGTATGACGAATACGAG 76459 30 100.0 37 .............................. AATAACATCTCGACGTTCGAATTAATGCGCGCCCTAG 76526 30 100.0 38 .............................. AGTACGTAATCAAGCGGCACGGCGACGATGGACTCGTC 76594 30 100.0 36 .............................. TAACTCGTTTCATCTTCATCAACCAGCGTCCACATT 76660 30 100.0 36 .............................. TGTCGTCATCGCTATCGAGTATCCACGCGCCGTCGT 76726 30 100.0 35 .............................. TATACATACTTCTTTGGATCCCGTACCCACCCATA 76791 30 100.0 37 .............................. GAGGATAGGACGGTACAGGAGGGTGTTCTTAACAAAC 76858 30 100.0 35 .............................. ACTTCAGCCCGAACTTTTTCGTATTCTGCTTGGCT 76923 30 100.0 38 .............................. CCCTGGATCACTTCCGTTGCCATTTGCGCAATAGACTT 76991 30 100.0 35 .............................. ATGGAGTAGCAGAGGCGGCGGGACAGCTCGGTATC 77056 30 100.0 36 .............................. TCGCCTGCTTTGCGCCGTTATCCTCCGTCGGCTGCC 77122 30 100.0 36 .............................. ACAAAAAGGTCATGCGTGACTGGCGCGGGAAAATCC 77188 30 100.0 35 .............................. CGTCCCTGCTTTTGGCTGGGAAATGGGGCCGCCAA 77253 30 100.0 36 .............................. GATGGACATGATTCAGTGGTTGTCTAGTTTCTTAGA 77319 30 100.0 36 .............................. TGGAAAAATAATCGCCGTACAGACCAGGCTTGTATG 77385 30 100.0 36 .............................. TAAAATTGTCGCTCCCGAAGCCGATAAGCCAAATTC 77451 30 100.0 35 .............................. AATGTATTTCTATGTATAAACATTCTACACCTTTC 77516 30 100.0 37 .............................. TGGTGAACAGAAATGAGAATGTCAGCTCCCCAACTAT 77583 30 100.0 36 .............................. TAGGACAATTGCTTAACTTTTAAAACTTCTCCTTCC 77649 30 100.0 36 .............................. GAATATCGTGGGAAAACTGGTACAACCCCCGTACAC 77715 30 100.0 36 .............................. TTGCACGGCATTATCGAAGTTGAATTTCAATTCCAT 77781 30 100.0 36 .............................. AACAACGAAGGTTCTGCCGACACATACCCGATCGTC 77847 30 100.0 36 .............................. TTTTTGTACTAACTCCAAATGAGTTCACCGATCTCC 77913 30 100.0 36 .............................. ATGTGATGCACCATGTCAGCTGGTGTCAGTATGCCT 77979 30 100.0 35 .............................. AGATTGGCCGAATTTCGGACTTTGAGACAGCGTAG 78044 30 100.0 35 .............................. AAAGATCAAGATGAGCAAAAATTGAACTTAGAAAG 78109 30 100.0 35 .............................. AGGAAAACCAACGCATCATCACTAAGTGGTCAGAG 78174 30 100.0 36 .............................. AAAGATGCGCATGCCAATCGGTTTGATTATTTTAAA 78240 30 100.0 36 .............................. TCACTTATCCATAGCAAGACTTCACAAGTGATCAAT 78306 30 100.0 36 .............................. GATGACACTATAAACATACTTGATATAGAGGAAATA 78372 30 100.0 35 .............................. CAAGTATGAGCGCTTTTTTGTCAAAGCTGTGAGCC 78437 30 100.0 39 .............................. TGTGCTAAACCCAGCCAACGCTTGCCAACAGGGCTATCC 78506 30 100.0 38 .............................. GGTGACATAGATAAATGGATATCCGTTCATGAGTCTAT 78574 30 100.0 38 .............................. CCAGTTGGGCTGTCAGACATACCAGACGTAGGGGTGTC 78642 30 100.0 36 .............................. CACGTTCGCAGGCGTTTTCCGCATTTCCCCACCATA 78708 30 100.0 37 .............................. TCGATCAATCCGATGAAATCGATGAAGATGGCATGGC 78775 30 100.0 37 .............................. TTGTAATGTTTTTTTCTCCTCTGGAGTTTTTCTGTCC 78842 30 100.0 36 .............................. CGTGTAGCTGCGGCAGGCTTCCCGGTAATCGAAAAC 78908 30 93.3 0 ..............C.....C......... | ========== ====== ====== ====== ============================== ======================================= ================== 49 30 99.9 36 GTTAACATCTTACCTATGAGGAATTGAAAT # Left flank : CATATATTAGGTGAAAAAGAATACGAACCGTTCGAATCGCTTTGGTAGAGGAGGATTTCAGAGAATGTTCTTAATCCTTGTATATGACTTTGGAGAAAAAAGAGTCGGAAAAGCATTGAAAATTTGCCGAAAGTATTTACACTGGGTTCAAAATTCCGTTTTTGAAGGAGAAATTTCAAAAGCAAATTTTGTAAAATTAAAAAAAGAGCTGGAGCTACTCATGGATCCAGAGGAAGACTCGATCATCTTATACACATTCAGATCACAAAAATTTTCTAAAAGAGAAATCATGGGCTTAGAAAAAGGAAACATAGATTTTATCCTGTAACATTTGTCGTCGATCTATCTCGTGACATCACCCCCCGGGAGATCGACGACAAATCAAAATCATCCAAAAAGCGGAAAATGCAACCAGTATGAGCCCTGTTTGGGAAAAAATAACTTTCATTTTTATAAAATATGTGATATACAATAATGTGATAGAATCAATGTTTTTTGGG # Right flank : TTTGGCAAACGCCGCGGTCTTTGTAAAATTCACCTTGCGTTAACATCTTCCCTATGAACTTTTCTCCGTGCTTTGATTTTCGCTTTGCCTCTCCGAATCTCTTTCTCGTTTATCCCGCATGTAAGGTGCCGTAAGGCTCCCACATCAAAATCTTGAGCGAATACAAAAAGTATAAGTGTGAGCAAACGGCATCTAAATGCCCGATTGGTTCAACTAACATTCAGTAGGAGCCCTACTGAATGAAGTTTCACTTTATCCCGCATGTAAGGTGCCGTAAGGCTCCCACATCAAAATCTTGAGCGAATACAAAAAGTATAAGTGTGAGCAAACGGCTCCTAAAAGCCCGATTGGTTCAACTAACATTCAGTAGGAGCGGGAAGAAAACTCCTCTGAATGAAGTTTCACTTTATATCTTCCCTATAGCTTTTCTTTGTTTATTGCTCCAATAGCTGATGTCCTGTCAAAGAAGTCTCAGCCATCGGAGCGTCCGCCTTTTGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACATCTTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 37757-37590 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFH010000030.1 Bacillus thermophilus strain DSM 105453 Ga0454087_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 37756 32 100.0 36 ................................ ACGCCGGGTACTACCGAGGAAAAGGAATCGAAGTAT 37688 32 100.0 35 ................................ GATGCTCAAGGTAACATGAAACCTTTGCCAAAAGT 37621 32 96.9 0 .............................G.. | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 99.0 36 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TTCCAAAGCAAAGTAACCGAGTAGTTTGAAACCATGCCGGCAAGTGGACTGGGGACAATTCATCGTCGATTGGAATGATAAGCAGATCATACTATTTTGCAATAAAACAAGTGAAACAACTTTAATAAAACGTTCTTCTTCAACTGAATGCGACGATTAAAATTGTTAATGCGGGAAATGTAGAGAAACACCGGTCAACTTACATGAGAGCTGGATTGTGAACAGAATTAAAAAAGGATTGAATTTTTGATTCTGGGACTAATGGAAGAATTGGAAATTTTTTTAATTAAAAAGAGCAGCATCCGTTCGTATAATATAACGTAAACTTTGGTGCGAACCCCAAGCGAACATAAAATCTCTAGGGGACCCGCACCAAAAAAAAACAGTATGATACGAAAATATATGGTAAAATTGAAAAGAAGATAGCAAAACACCTCCCAAAAACAGGTTATCCTACTAGATTTTGGGAGCAATTTTCCTTTTATTAGGAAATTTTCGCT # Right flank : CGCTGTGTCGATCCTTTTTTCCTTTTAGCCACTTCCTGTAATCGCCCAAGGGTTCCGGATATTGTTCCAGCTGCTTGATCTTTCGTCGGCGCTCAAATCAAACCGATTTGTAATGAAATGTAGTACATTCCCTTTTGAATCCATCACTTTTAGAAAACGAAAGTAATTTTCAGCACGGTTTTGAGTCGTACCAATCAGCACCATTTGATCCGATAAAACAGTCGTATCCTCGGGCAATTTAAAATTGTAAATTTATCGCATGGCAGCGTTTTTACGTAGTCTAGATAGAAAAAAGTAGCCGTCATCAGTCATGCGGTCAAAGCGCTCGTAGTCCAGATAGCCACGGTCAAACACATACATGCACTCCTTGTCATCCACCATGATTTCAAGCTGACCACGGTCGTGTTCTTTTGCCGTTGTTTGGACGGCTTTTTCGGGATAGGAAGTTCCTTTTTCCATAAATACAAGGCGTAGATGCAGTTTCACACCGGCTTTTGTCT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2495-2262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFH010000044.1 Bacillus thermophilus strain DSM 105453 Ga0454087_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2494 32 100.0 35 ................................ GTTTCCAAATCTGGAAATGATTCTTTCGGACGCCC 2427 32 100.0 36 ................................ TCGGGAACCCGGATTCCCCGAATCTCTCCACAACCT 2359 32 100.0 34 ................................ GTGCAAATTTTGCACAAGGTTAAAACGGTCGATG 2293 32 93.8 0 ...........................GC... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 98.5 35 GTCACAACGTATATAGGCGTGTGTATTAGTTC # Left flank : AGTTCTCGCAGAAAGCGAGGACATAAACGATATTGTCGGAAATTCCGATAATAATTCGGTTCTCCCAAAATGGGAGGAACGAGCAAACGAAGTCACACCGGACATGTCACGCCATAAAACTCCGTCTAATAAACAAAACAATAATACATATAAAGAAACGCCTTCGACGGATTCAATAATCAAACGCGGTCTTAAACACGCTATCCCTGCGCCCATTTACGATGCCCTAGCGCCCTTTCTAGGCGGTCAGGAGCTTTACGATACCTACGGCATACTATTGCGTGCCAAGGCGTCTGTAGACCGTTCTATCACGCTAGAAACGCATGGACAAGCCTATATTGACGCATTCATGAACGTTGTCAGACTGTATAAAGCGGGCAAGGTGCGGAGCCTGTCCGGTCTACTTTATCGCACATGGCAGGCGGTTACTTCGACGATTAAAAGACGCGTCAGCGTGGACAAGCATCCGGTATTATACGACTGGCTTGCTTAAATTCGCA # Right flank : TTCGTTTCCATGTCCTCCGATTTTCGGAGAAGATCGTCACAACGTGCGAACATGCTGCAACTACTCAAGTATCGACCTACGTAATCGACGGATTAAGCGCGTCGTTATGCGGAATGTGAAACGTGTTTAGATACAGAAGTATCGAGGACATTCCCGAAGATGACATACCGGCATATATCACGGAAACTAAACTGAATAGGGATGATTTAAAAAACGGACAGAAAGCGGCACTAGTGATTCGGCTGCACTATAAAGATGGGGGTGCGCAAGGGAAAAGAACGGACTTATCCCAAGATTGGGAAAAGTTAAATATCCACGAAAAACTGGCTAAAATGGCAGGAATCAGTAAAGGCTCTATCGGGAATCTAATAACGGTCTACAAACGACGTACCGACCTATTCGAGCGGGTATTCAACGGAGAGTATTCGATTAATCGGGCATATACGCAGATGAAGGCGGACGAGCAACCGGAAGGCGTTAAATGCGCTAATTGTTCTCCG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAACGTATATAGGCGTGTGTATTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //