Array 1 207212-206241 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDN01000002.1 Riemerella anatipestifer strain RCAD0147 ZB100001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 207211 47 100.0 30 ............................................... ACATTAGTGTGCGACCCTAAAGAGACAGAG 207134 47 100.0 30 ............................................... TTCAATTGTGAGGTTGTTGCTCCTCCGCCG 207057 47 100.0 30 ............................................... CCGATATAAATATTTTTTTCGTTTTGGTAT 206980 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 206903 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 206826 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 206749 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 206672 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 206595 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 206518 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 206441 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 206364 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 206287 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 97.5 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 206790-204724 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDN01000004.1 Riemerella anatipestifer strain RCAD0147 ZB100003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 206789 36 91.7 30 .................G.....TG........... ACTAGTAAAATAATAACGATATGAGAAATT 206723 35 83.3 80 ...................-..CT....T..A...A CTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT T [206698] 206607 35 83.3 79 .......G...........-..TT....T..A.... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC G,C [206574,206583] 206491 35 83.3 79 ...................T.T.-..T.T..A.... TCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT G,CG [206457,206471] 206374 35 83.3 79 .......G...........-..TT....T..A.... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC G,C [206341,206350] 206258 35 83.3 79 ...................T.T.-..T.T..A.... TCCGCTGAAAATATAACGAAGCTGTGAGTAAAATGAGAGTAGTCCCAACAGACCTAGCAGATGACGGTAAACTAAACGG G,CG [206224,206238] 206141 35 83.3 82 .......G...........-..TT....T..A.... TCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT G,C [206108,206117] 206022 35 83.3 81 .....T.............-..CT....T..A.... TCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAA G,C [205989,205998] 205904 35 86.1 81 ...................-..TT....T..A.... TCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA G,T [205871,205880] 205786 35 83.3 80 .......G...........-..TT....T..A.... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC G,C [205753,205762] 205669 35 86.1 80 ...................-..CT....T..A.... TCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT G,T [205636,205645] 205552 36 97.2 30 ...................G................ ATAGCAGTAGAACCATCAAACGCTGTGGCT 205486 36 97.2 30 ...................G................ CGGCAACAAAAGAAGGAGAAGAACAAAGCA 205420 36 97.2 30 ...................G................ AGCAACATATACGAAAATCCAGAAATCTTA 205354 36 97.2 30 ...................G................ TGTGCTTCCTACAACGAGTAGCGTTCCTTT 205288 36 97.2 30 ...................G................ TTAACTAAGTTACCTAGAAGTATAAATGAA 205222 36 100.0 30 .................................... TCTGCATCTACGAAGGTGATGAGGAAAAGG 205156 36 100.0 30 .................................... CAATAGGACCTATTATATTTACAACAACAG 205090 36 100.0 30 .................................... ATTTTGAAAATATAGAGGCGATAAGCCTTT 205024 36 100.0 30 .................................... ATTCTAAAAGGTACAGAGAATGAAGCTAAA 204958 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 204892 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 204826 36 100.0 31 .................................... TCACAAACGGAAAAATATGTTTATTCCGTTG 204759 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 24 36 92.0 52 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : CATTAAAATAGATGGGGACAACCCTAAAAACGGTATTGTCTTTAAAAACTTAGACACTCAGCAAGAAGTGAAACTCTCAGCAGAGCATATTGTCCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCGGGTAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGAACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGCACTTCTAAATAAAGACCGCCCTTCCTTAATGCTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGACACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGCCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATAAATAGGAAGCAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTATGCCCTTAGGT # Right flank : TTAGGAGCAAATAAGCTGTATTTATTGGTGTTGTGAATACCCTTCAAATGCTGTGCATTATTGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTA # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.45, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-67] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //