Array 1 284481-288478 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKA01000002.1 Moraxella catarrhalis strain 26/133/1 NODE_2_length_349189_cov_29.228724, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 284481 28 100.0 32 ............................ GTCTTGATAACCGATACGCCCAGTTACCACCT 284541 28 100.0 32 ............................ TTGGAAATTATGCAATCTGATATAAAAAAACC 284601 28 100.0 32 ............................ TTTGCATCGAATTGCTGCTGTAGCGACTGTGC 284661 28 100.0 32 ............................ TTGCGAGGAGACCTTCACGACAAGCTATTAAA 284721 28 100.0 32 ............................ AGCGGATTTGGCGATACCCTCTAATCTTAGGT 284781 28 100.0 32 ............................ TCACTCTCAAAAGGAAGCCCAAATTCATGGGC 284841 28 100.0 32 ............................ ATGCGGATCGCCTGCCAAAAGAATTCCAAAAG 284901 28 100.0 32 ............................ AAGTGATGAAGAAGTCAATGATTTACTAGACT 284961 28 100.0 32 ............................ CTGTGATGCCTTACCTCGCACGGTGTCGGTCA 285021 28 100.0 32 ............................ CCTGACAATGTCGGATTTATCAATGTGGTGGG 285081 28 100.0 32 ............................ TAGATCTGAGCCATTAAATTTCATAATGAGCT 285141 28 100.0 32 ............................ TTACTGTATTCACTCTTGGGTGCATTAGTTAT 285201 28 100.0 32 ............................ GTTCAACACCAACCGAGAAGCCTACAATGAAC 285261 28 100.0 32 ............................ TTAAAGTATATCAAGAAGTTAGTAATGTTGTT 285321 28 100.0 32 ............................ AGCTTGATTAAGTCCCATTTGTCATCGAGCAT 285381 28 100.0 32 ............................ ATCTAATGCAGACTGCGGCAAATTTGGCGTGC 285441 28 100.0 33 ............................ CTAGAATAAATGCACCTATTGCCATTCTCTTTA 285502 28 100.0 33 ............................ CTGTGCAAGTGCTGTGGTAAAATTTGCGTCGAC 285563 28 100.0 32 ............................ AAAAGGATCGGGCTATGATCTCTTAGGTGCTT 285623 28 100.0 32 ............................ TAAGCTATGCAGGCGGTCAAGCATATGACAGC 285683 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 285743 28 100.0 32 ............................ TGGTGATGTGCTATATGCTAAGTATGTTTGAT 285803 28 100.0 32 ............................ ATTTGCCATCAGAACCTTTGACGGCGTTCATA 285863 28 100.0 32 ............................ CAGCGGCTCTATGGAGCGATGTACACTAATAA 285923 28 100.0 35 ............................ CCAGTCGCTCAGTAGCGAGTTAAGTTTCAGTTTCA 285986 28 100.0 33 ............................ TAATCCCAAGACCTGAGCAAGTCTTAAAACTGC 286047 28 100.0 32 ............................ AATCTGTCCAGTCTGATGTATTGCCCAGTTTA 286107 28 100.0 32 ............................ TTGGTTTTCATGATACGCGTCACGAAGCAATT 286167 28 100.0 33 ............................ TACTATACCTGATTCTTATTCTGTGAATTATGT 286228 28 100.0 32 ............................ AACTTTTTCGTAATGCAAATTAAGCAGTTCTG 286288 28 100.0 32 ............................ ATACGCATCAAGCAAGTGACATCGCTGATCTG 286348 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 286408 28 100.0 32 ............................ TTGGTGCAACATTAGAGATGACCACTTTTGTC 286468 28 100.0 32 ............................ TAGAGGGTTCGTAGTCTTCCACTGAAATAGTC 286528 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 286588 28 100.0 32 ............................ ATAAGGCTACCGCTCCACACCCATTCGGTCAT 286648 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 286708 28 100.0 32 ............................ CAGCTGGCAGGCAAAGCAAGCACAGCGTCAGT 286768 28 100.0 33 ............................ TGTTGATGCTCCTATGTCGTATAGCACCCCGTC 286829 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 286889 28 100.0 32 ............................ GACGATTACACGGCTTGAAGTATTTAGCCGAT 286949 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 287009 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 287069 28 100.0 32 ............................ CTGCAAATCCTCTGGAGCTGCTGTCCAGTCTG 287129 28 100.0 32 ............................ AAAATAAATGGCTTCTGTAGCGTTAAATCGCT 287189 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 287250 28 100.0 32 ............................ AGAATACTATGACCAGATGAAGCTCATTATGA 287310 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 287371 28 100.0 32 ............................ ATCGGTCGGTCATGGCGGTAAGCTAATTTTGG 287431 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 287491 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 287552 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 287612 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 287672 28 100.0 32 ............................ ATAATGAACAAATGAATATTATTCCGCTTGTT 287732 28 100.0 32 ............................ CCTAATTCAATCGATTCAAAACCAAAAATATT 287792 28 100.0 32 ............................ ACTGTAGATTATCAGGAAGACTGGGTAATGTT 287852 28 100.0 32 ............................ CACACACGCACATCATTTCAATAGATTTTATT 287912 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 287972 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 288032 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 288092 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 288151 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 288211 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 288271 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 288331 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 288391 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 288451 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ =================================== ================== 67 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //