Array 1 277437-278726 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALSQ01000016.1 Streptococcus agalactiae GB00020 ctg7180000003647, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    277437	    36	 100.0	    30	....................................	AACATTAGCCTTTTCTAACTCTTCAGCTGT	
    277503	    36	 100.0	    30	....................................	TATGTCTTCTAACAGTTGCTTCTTGTGCTT	
    277569	    36	 100.0	    30	....................................	CCGTCAAACAAGAGCGACAGCGAAACAAGC	
    277635	    36	 100.0	    30	....................................	GGATGATTTCGATTATGCGGCGGTGGTTGA	
    277701	    36	 100.0	    30	....................................	AAATGTTAATTTCATATCTACATCTTGTTC	
    277767	    36	 100.0	    30	....................................	ACATAACGTTCAAAAGTTTCCACTAATAGC	
    277833	    36	 100.0	    30	....................................	TCAAACAACATTGGTGATCTTATTGCGGTA	
    277899	    36	 100.0	    30	....................................	TTATTTAAGACGTGATTTAATGTTAAAACT	
    277965	    36	 100.0	    30	....................................	CAAACTATCTTGATTATAAGTGGACTGATA	
    278031	    36	 100.0	    30	....................................	ATTTTTACACGAGTGCTAGAAAACGGGGCA	
    278097	    36	 100.0	    30	....................................	ACATTTGTTAAATTTGAACTTACTGGAAAT	
    278163	    36	 100.0	    30	....................................	TCCAAAACAAATACGAATGCTTGAGCGATA	
    278229	    36	 100.0	    30	....................................	GATTACCTTAGATGATGTTCTAATCGGTAA	
    278295	    36	 100.0	    30	....................................	TTAACAGTTTCAAGTCTGTCTTGTTACTTA	
    278361	    36	 100.0	    30	....................................	ACTCTAAATGATAGTTATGAGTTAAATGTT	
    278427	    36	 100.0	    30	....................................	CAAATTACAGTTTCGACTGATTATGGAAAT	
    278493	    36	 100.0	    30	....................................	ATATGTTCCACTCTATGAATTTAGGCTCAT	
    278559	    36	 100.0	    30	....................................	TTTTTACCAATGCTTCCATATCGCTTATAT	
    278625	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA	
    278691	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        20	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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