Array 1 965549-966492 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP075128.1 Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15 strain CFSAN044923 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    965549	    29	 100.0	    32	.............................	CTGGCGACCGACCGGGCAACGAAACGGGCTGC	
    965610	    29	 100.0	    32	.............................	CCAGGACACCTCACGCTTAACGTTGAATTCAG	
    965671	    29	 100.0	    32	.............................	TTTGTTTTTGAGCTGAAGACGCTTCCACATCA	
    965732	    29	 100.0	    32	.............................	ATCCTGATACAGGCTTATCAGTGGCTCTTCTT	
    965793	    29	 100.0	    32	.............................	CCAGACACGGAGCCGTGCATTTCGGGGTAGAG	
    965854	    29	 100.0	    32	.............................	ACAGGTATTGATGTTACCGGATTATCCACTGC	
    965915	    29	 100.0	    32	.............................	TGATAAAGAAACACTCTCTTTCTGATAAATAT	
    965976	    29	 100.0	    32	.............................	CACCAGTAGAGCAAATCGCTGTTGCGGCCAAC	
    966037	    29	 100.0	    32	.............................	AATCCAGTCAAACATAACCATATCCTTATCAA	
    966098	    29	 100.0	    32	.............................	CAGTTGCTCAATGAGGAGATTAACAGCGACGT	
    966159	    29	 100.0	    32	.............................	ATTTCGAGTACCAGTTTAATAACGGTTAATAT	
    966220	    29	 100.0	    32	.............................	CAGATTAACCCTGTGGTCACAACACCCCTGAT	
    966281	    29	 100.0	    32	.............................	GTGACATTTGTTACCGACACGGAAGAACAGGA	
    966342	    29	 100.0	    32	.............................	GATTTCCGCGACGTGCTGCCGACGCGTCTGGA	
    966403	    29	 100.0	    32	.............................	CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC	
    966464	    29	  86.2	     0	............T............G.TA	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  99.1	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT
# Right flank :  ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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