Array 1 25594-23088 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000037.1 Laceyella tengchongensis strain BKK01 NODE_37_length_27262_cov_91.254052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 25593 29 100.0 37 ............................. AGTATTGAAGGGCGATTGCCTCGGCGTCCGCTGGCAC 25527 29 100.0 35 ............................. CGAAGACAAGGTAATGGCTGGCGTCATGGCTGATC 25463 29 100.0 36 ............................. ACTTGCCGTCTGTGGCGGCGTGGGCGCGGTGGAACC 25398 29 100.0 37 ............................. CTTTTCTTCACTCTCGCTAGAACCACTTGCAATGCCC 25332 29 100.0 37 ............................. TCGAAATCTCAGGGGGTTGACGTATCCGGTGCCGTAA 25266 29 100.0 36 ............................. CCACCTGAGCCGTCCCAGAGTTGCTCGCAAACTCAC 25201 29 100.0 37 ............................. CCTGTTCGTTCAGAATATAAATATTCCGCACTTTAAC 25135 29 100.0 35 ............................. TTTGTCCGTGTCTGGGGTGTCCGGCTCCTCATCTG 25071 29 100.0 36 ............................. TCTATTCAACATCTCTAACAATGCCAGGCGGATGTA 25006 29 100.0 36 ............................. CAAGATCACTTTCGTCAACGCAAACCCTGAATTTGA 24941 29 100.0 35 ............................. CAAGTTAAGGGGAACTGTAAGAGCGACGAGGCATC 24877 29 100.0 36 ............................. GTGTGCTTTTTAGTCAACTTGTAAACGGGGAAAGTG 24812 29 100.0 38 ............................. GTCTTTCTTGCTGGCCTTTTTGGATAGCTCCGGCGGTG 24745 29 100.0 36 ............................. CTTTAAATATGGCTTTGTTGGTGTTATTGAAGCGGT 24680 29 100.0 37 ............................. TCGATTCCGCCACGTCGTCTACGGTCTTGGTTTTCCA 24614 29 100.0 36 ............................. GATGTTACTACAATACAACAGTTAACCCCGGAAGTC 24549 29 100.0 35 ............................. ATTCATAAACCAAAACAAGAAAGCGGGTACGACTA 24485 29 100.0 37 ............................. TGTTCTTTAGTACGCGGGTTGCGTTCCGGGCTTTACC 24419 29 100.0 35 ............................. TTCCTTCGCCAACCATTACAACGCGGTTTTCAGGG 24355 29 100.0 35 ............................. CTATCAGAGGAAGAGTTGGTCAAAAAGCAAGCAGC 24291 29 100.0 37 ............................. TCAGAAGCTGTCCGAACGGATTGGCCGGATCACGAAT 24225 29 100.0 37 ............................. TATTAACGAATTTTTCCCCGTCCATACGCTCCGGTTC 24159 29 100.0 37 ............................. GTTTATCCGAGAATCAAATTTTGGAGACGTTTTATGT 24093 29 100.0 35 ............................. CATTCATGAAAAAGGTGATCCGTTCCCCATGATGG 24029 29 100.0 35 ............................. ACAAGTGTCACGGGTCTCGCCGCATGGAAGTACTC 23965 29 100.0 37 ............................. ATCTTTTTTGCTTGGATTTTGCCCTCGGCACACATGT 23899 29 100.0 36 ............................. ACGGATGGAGCAGTCAAGACCAAGACCACGGAAACC 23834 29 100.0 36 ............................. CAATGTAAAAATAACCTACACTGCCGGCTACGGGAC 23769 29 100.0 37 ............................. AAGAGCGCCTCGGGACAGAATACACGATCTTGGTAGA 23703 29 100.0 36 ............................. GCAAAACACATGTTGCTGGCTCCCCTTGGAACCAGA 23638 29 100.0 37 ............................. CTTTCCATCTCTCCTTTTATTCGATGGGTGCGGCCCC 23572 29 100.0 37 ............................. TTGATTCGAGATGTCGAGTGGGAAAGGCGTAATCCAA 23506 29 100.0 37 ............................. ACATACGCTCAGCAAGGAACTCCCAATCTTCCGGTGA 23440 29 100.0 36 ............................. TTGTATTGGAAGGGGCGTCAAGCCGCCCCGTTGTTT 23375 29 100.0 36 ............................. GCATGACGGATGAAGCGGCGGATGCCCCACCGGTTC 23310 29 100.0 36 ............................. CTAGTGAGCATCGCCGGAAGCGTATCGAGGAAGAAG 23245 29 100.0 35 ............................. TAGAAACCCATCCCTTCTTGTTAGACTTCCGTACC 23181 29 82.8 36 ....AT..............GT.G..... CGAACAGGCTGAATATGCAGTAGCGGGTGACGGAGG 23116 29 82.8 0 ....AT..............GT.G..... | ========== ====== ====== ====== ============================= ====================================== ================== 39 29 99.1 36 GTTATCAATTAACTATGTGGAATATGAAT # Left flank : TAGAAACAGAGTTGGACCATATCTTCAAGGACAAAACCGACATCGCGCATTGGTATACAATCTTCTTAATGCTGACCGTACCATCGTAATCAAAGGTAAAACCATTGCTGATATGGGAACACATGAAGAATTGATGCAAAAACAGTTCGTCTATTATCAGTTGTTTACCGACCAGTTGCAAGGTTCGCTGATAAGTAAAAAAGTACAGGAGGATTTATGAGACGAGTTTATCTTGCCATTAAATATCACGGTAAGGGAGTCGTGCAGAAATGTCCTTCAGGCAAATATGATCCCTTTACTTTAGTTTTGTTTGGCAAATGCAGTAAGGTTTTTTATAATAAAATGTAGTAAAGTCCTTGAAACACCTTACTCGAACACTATCATATACTCGGGAAGCAAATTAATACTGAAAGTTTAATGCAATTGGAGGGGTTTTGAAGCCTTATTCAATTTGTTGAAAGCCTTGAAATAACTAGGTTTTTCTTATGTGACTTTATAGG # Right flank : AGTGATCACATCGACCCGTTTCGCAAGCAGCACTTGGTTCTGTATTCAAAATGTTTAAGAAGAAACTCTCTCCGTAAGCACTTCCATCGCCGTGTCAGCCGCCCTTTGTTCTGAATATTTTAACAAAAATAAAATCCTGCTTATTATGCGTGTTTGATGAGTATACAAAAGAGAAAATCAATGGGGTTATCATAGACATTGTCAGTTTGCAATTATTAAATCGAAAACTTACAGCGGTGGTGTTTCACCGCTGTTTTTGTGTTGGACACGAAAGTAGCTTAAATATAAACTAATGACCCACCGAAAATGCAGTAAACCTCAAGTTAGAAAAATCAGCAGATGAAAATGCAAAAAAAGTCTAGTCATATCAAGGTATTGATGAATATCCCGTTAAAAGAGGTTCACTGCAAAGTTGTTATGCAAGATAAAATAAGTTAATATATAAATTGTTCAGAGAGGAGGTAATTATGAGAATAAAATGTTCATTTACTTGCGAGGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCAATTAACTATGTGGAATATGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 18568-18863 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000048.1 Laceyella tengchongensis strain BKK01 NODE_48_length_23695_cov_88.267459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 18568 30 100.0 37 .............................. TTCACCGTCGATGAGGACGGCGACAAGTATGATCGGA 18635 30 100.0 36 .............................. ATATGATCGGTGTCCGTTCTCTTCATATGGCAACCA 18701 30 100.0 36 .............................. TGATCAAAGGCGGAAGAATAGCTTGCGATGTCGGTT 18767 30 100.0 38 .............................. TATCAAAGTCAGTACATAGAGATCAACAGTTTGGAGTG 18835 29 80.0 0 T........A.T.......A...-.C.... | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 96.0 37 GTTTAGTTGTAACCATAGTGGTATTGAAAT # Left flank : TCATTGTTTATTTAGTTTTTCGCTACATCATTGTCAGGCTTGTCTAAGTGTTACGGGAGTGTGTACCAAATCTCAAGGAGTTGACGGATGGGATGAGTAAACAACGTGTAAAACAAGAAGCGATTGAGCTGGAAGATGTTATTTTGATTATCAATGGCAGTCCCACACCGGCTGCCTGTAAAAACTTTATCAGGATGGTAAACCAGATGAAAGTATCTCAAAAGAATGTTACTATACGTTGCAAATGATTTTCTTCACTTGTATTGCCTACCGAAACGAGATGAGAATGGCAAGAGACGGGCTTGTATGTTCAGTTGATGTTGGCAGCAAAGATATGCTAAAAAGAATGAGGACGAAGTGGATATTGGACATCTACCATATCCTTTAGTGAGCTAAAAAGTCTGTGAACCTCCCGGGGTTTTTGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGATATAATGAAAATGCTTGAAATGACTGGTGTTCACATACGG # Right flank : TGTGTATAAACGTTCGTTTTTGTTACACGATTACACCATCTCATGTAATCATTTTCCGCTTATTTCCACTTGACAATATTGTTATCATGAAATGAACCCCCGTCAAAGGAGAAAAGATAATGACTAAAATCTATAAACAAATCCCATCCGCAGCACTCCAATACCTTCAATACGCCATCCATGAGCACCGTGAGCAACTGATCACCCAATTTGACCGCTACATTAACACCTTTGAAGGTGAGCTGGAAATGATGCGCCAGACGCTTGTTAGTCAGTGGTCAAACCTTATGACAGCTTATACATATTTCGCTCAGGAAGATCCACTCGCAAGCTCTGCTCTCCGACAAGAAATCGACCAAGTAACTGAACTGCTTAAAAGTGATAACAAATTGCGTCCGCTGATTGAAAAAGAAGAAGCTCTTTTTGATGAATTAAAGAAAATCGCCGCCCAATAAGGCGGTTTTTTTGCTTGCAGAAAAAGTACCGACCAGTATCACCGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTAACCATAGTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 19772-19995 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000048.1 Laceyella tengchongensis strain BKK01 NODE_48_length_23695_cov_88.267459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 19772 30 100.0 34 .............................. GCCATTGACGATACCAAGGCCACGAAAAACATAA 19836 30 100.0 36 .............................. GGGACTCCAAGAACTTGTGGCACATCAACCAGTTCC 19902 30 96.7 34 ...................A.......... GCGTCTGGGCATCAAAGCAGATGGTATCTTCGGC 19966 29 90.0 0 ...........T.....G.....-...... | G [19993] ========== ====== ====== ====== ============================== ==================================== ================== 4 30 96.7 35 GTTTAGTTGTAACCATAATGGTATTGAAAT # Left flank : AGAAGAAGCTCTTTTTGATGAATTAAAGAAAATCGCCGCCCAATAAGGCGGTTTTTTTGCTTGCAGAAAAAGTACCGACCAGTATCACCGGTGCCTTTTCAGGGATAGTGTGAGGAAAAGGAATCGACGAAGTTTTAGTTGAATCCATAGTGATATTGAAAGGATGACAAGGGATACAACAAGGAAAAGTGGTTCACATCCAATCTACCAACTAAGAGTTCTACGCCTGGGATAGCCAAAGGAGAAACTAACCCCAGTATCTCTGATCGTGACTGTATTGATCAAAAGGAAGCACAATCCTTCTTCGATCTAATGACCCCCATGGCTTAGATCGCGATGGAGATAACGTAGCTTGTGAGAGTTTGCCGTAATTGGAGCTATCCTTTAGTGAGCTAAAAAGTCTGTGAACCTCCCGAGGTTTTCGCATCATAAACGGTTCACAGATTATTTTGGTTTTTGTTATAATGAAAATGCTTGAAATGATTGATGTTCACATACGG # Right flank : TGGGTGTATGACCTGAGGGAATATACCGTTTCAACCATCACAAGTTGTTTTGGATCGGCGAGGGGGTTGCCTATGCCTTTGGGGAGCTCCTCATCTTCTGGTACATTATCTTGATCTCGATCGTCTTACCCTTGGTCAGGTAAGTATTTGGAGAAAAATGGTTCCAGAAAAGTCTTAGACATTGCGGTTTAGGCTTTATTTGCTTCTGGGGCAATATTTTTCAAAACTATATGAAAAATTGATATGATAGGCACGGAGGTGAGACTGTGAGAATCAATATAACCTTTCAAGACCCATCACAGGCAAGAGAGAACGCATTTTGGTTGGCTATTTTGACATATGTGGAGCCGTTCGTATTGTGGTTTGGGATCATGAAGATGTACTCGATGACTCCAACAGGCTCCTGCCTTGGTGGATTGATGTGTTGGGGATCGTGCTGGTTGTGGGCGGCAGGTTCTGGATGCTATTTTTCCGAGGGAAATGAGCTTTCTGTTATTGGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTAACCATAATGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 22961-22107 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000040.1 Laceyella tengchongensis strain BKK01 NODE_40_length_26442_cov_96.072725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================================================================================================================================================================================= ================== 22960 31 90.3 34 ..........A.T.....G............ TCTGGTTATTGACTCAGGCGTTCCATCAGTTTTC T [22955] 22894 31 90.3 35 ..........A.T.....G............ GCTTGAACCTTTGTAGCGGGATCATCAGACATCAT T [22889] 22827 31 93.5 36 T.................G............ CCCAGGAAGAAGCAAACTATTAAAAATGCTTTGAAT 22760 29 83.9 199 T...............-.G.......-..C. GTAAACAGACACTTCTAATAGTGGTTGACTATAAGGAATCTAAGAAGTGAAGTGTAGACTGCATCAGAGGAGTACAATATCTTTTAGTAAGCTAAAAAGTCTGTGAACCTCCCGGGGTTTTTGCATCATAAATGGTTCACAGACAATTTTGTTTTTTGATATAATAAAGATGCTTGAGATGACTGATGTTCACATACGG 22532 31 100.0 37 ............................... TCCCGAATTTCCTAATTGTACCCGGCGGGAAATCCTT 22464 31 100.0 36 ............................... TTTTCTAACGCTTCCTCCCTCGCTTCCTCGTTCGGC 22397 31 100.0 34 ............................... CGGATTTTCTCCTTTTCAGGTGATGAACCGTCGC 22332 31 100.0 35 ............................... TCAGATGTTCTATCATCAGTTGACTGAGAACATCA 22266 31 87.1 35 A...........T.....G...........G TCCTTCGAGGACAGCCACGCCGTAATTTCTAGCTC 22200 31 80.6 31 .T................T....TA.C..T. GTTCTTCTCTCGGACATATTGATCCAATTGT 22138 31 77.4 0 .A........A.TT....G...C.......A | T [22111] ========== ====== ====== ====== =============================== ======================================================================================================================================================================================================= ================== 11 31 91.2 51 GGTTTAGTTGTAACCATAATGGTATTGAAAT # Left flank : AGAAGAGATTATATTTGGCCCTGACGAGTGCTGGCTGCGTGTAAAAAAACATATCCTCTTTGGGGACTTGGAAGTGGATTTGTATATTCCAAAATACAAACTGGTGATTGAAGCGGATGGGAAGGCATATCACATCACACCATTACAAAAAGAGCGAGATCGTCAAAAGGAATATGTATTGAAGAAACATTACAAACTTAAGGTGAAACGATTTAATAGTGATCAAATTAAGAACCGGTTGAATCGGCGCGTAGGAAAGGTTCATGAAGTAACGGGTGGACCAAGAGAAAGTTTGTGGCAACAAGTGGGGGAGGTCATTAGTGGGCTTTATGGATAGTTTAAAGATATAGTTATTCGTAACTATATCAAACGAGTACAATATACTTTAGCATGCTAAAAAGTCTGTGAACCTCCCGGGGTTTTTGCATCATAAACGGTTCACAGATTATTTTGGTTTTTGTTATACTGAAAATACTTGGAATGACTGATGTTCACATACG # Right flank : CGGATGATCATTTAAAATACTTTCAGGAAACCAATACATACATAAATAACCAAACGGCATAAATGTAACAAATGGATGTAAGTTCCCTCTCCTTTTTGGCAACAATGCACCCATAAGGGGTGGACAGTCAATGAGGGAACAACATCCAAAGCAGAAAGTGATCGAGCTGGAAGAGGTTATATTAGTCATAAATGGCAGTCCTACACCGGAAGCCTGCAAGGACTTTGTAAAGTTGGTCCAACAGATGAAAGTAGCTCAAAAGAACAGAAATTAAGGGGTTTTACCCATACCGTCGGGGTGCGCTTTGCATCCCGATTTTTTTGTTATATGATATGTACATAACAATGCACCGAGAGGAGTTCGCAAATGAGCCAAAGCATTTACGATGTGCACAATGTTGCCATTTATCTGCGTAAATCACGTGGCGATGAAGATGTGGACCTAGACAAGCACAGGGATGAACTGGTGTCAATGTGCGAAAAGAATGGTTGGTCCTATGT # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.56, 5:0, 6:0.25, 7:-1.67, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAGTTGTAACCATAATGGTATTGAAAT # Alternate repeat : GGTTTAGTTGAATCCATAGTGGTATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 26352-25917 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000040.1 Laceyella tengchongensis strain BKK01 NODE_40_length_26442_cov_96.072725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 26351 31 100.0 36 ............................... TGAACCAAGCCTTCAACCGGATATGCAAAGCGCTCA 26284 31 100.0 37 ............................... ATGGACGATTGAAAGACTACGAGTGAAAGCAGATGTG 26216 31 100.0 35 ............................... CGATCAGCGGTTGCAAAATCGGTAGAAATCGCTCT 26150 31 100.0 37 ............................... AGCGTTTTGTCAGTCGCCAACAAGGTCAAATTGTTTG 26082 31 100.0 37 ............................... TTTGTTGACGAGGAAGGGAACGTAACCCCGGAGGGAT 26014 31 100.0 35 ............................... CGCCTCCATTTTGAATCATAACCACGCTGGGTAGA 25948 31 96.8 0 ..............................G | T [25942] ========== ====== ====== ====== =============================== ===================================== ================== 7 31 99.5 36 GGTTTAGTTGTAACCATAATGGTATTGAAAT # Left flank : CTCCCGGGGTTTTTGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGATATATTGAAAATCCTTGAAATGATTGATGTTCACATACG # Right flank : ATGGAGATGGCACTTGAGAGTAAGCTGGATGACCTATATATCGTGTCAAAGAATAAAAAGCCGTCCGCATAGAATGGCTTTTGAATCGTTTTACAGGAGGCTAGAAGGCCCGTAGAGTGGCGGAAAATTGTTTCGAGTATTTAAGTTTTTATACGCCAAAAAGTTTTTACAAGCAAGGGACATATATAACCGTCACTTTCAAGCTATACAGTTCTCGCTTGCGGTCTCGGTGCCTCTACGTCTCGGCTCATGCTCTGTTGATTTCATTTATTGCCACTATGTGTTTACATGGAAACAGGCATCCCGCTGCAACCGCTCTTGCATTCTCTCTACATCCGCAGCACGGAATGACCGCTGCCTGTCGTTGTGTCTAGCACTATGACGGATTAATTCTTTTGAAGATCCTTTCTAAACTTTGGTAGACCACTGGCGACCAATTTGATCAATTAGCCATGAATGGAGAAAGAGAAGTTACATAGTGAATTAAAACAGGAAATGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAGTTGTAACCATAATGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 12257-11859 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000097.1 Laceyella tengchongensis strain BKK01 NODE_97_length_12459_cov_120.176959, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 12256 36 100.0 38 .................................... GATAAACGGAAGTATACGCCGTTTTCAGAAAGGCCCAC 12182 36 100.0 35 .................................... TCATCCTTGCTGACTTGCTCCTGGGAAACGCCAAG 12111 36 100.0 39 .................................... GCGAAAAAGAAATAATTAAAAGCCCCTGGTAGCCGCCAG 12036 36 100.0 34 .................................... ACCAGGCTACATCAAGCAGCTCGAATCCATCCAG 11966 36 100.0 36 .................................... GAATAACCTGGTCGTTTCTCGAAGAAGGGGAACCAG 11894 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 100.0 37 CTTTAAGTGATTAGATGAATTAAATGTGATTAGCAC # Left flank : GGCTACCGCTGACTTGTTTCCTGTTTCCAGCGCCTCTTTTATGACTTGTAATTTAAACTCCTGAGAGTACCGATTTCTTTTCATTTTTCTCATCCCCCATCACTAGTAGTGTAATCCACTTACACTCTTAGTGTCCAAAGTCATTAGGGGGCTAAAGAGATTAGCACTGGTTCAAACAAAACGGAGCCGTTATTGGATCGCT # Right flank : GATGAATTATATATTTTTCGTCTAGTTTCTTCCCTTACTGAACGCGTTGCTACTTTTTTGGTCACTGGATAGACACAAATGATAGCTCCTTGGAGTCATGTGGGTGTTTTGGATGCCGCTTTATAATCGAGTAGGCATTCCTGCATGATTGAGAAGACAGGAGGAGAATCAGTGTCTACCACAGTTCACAAACCTCAGCGGTTGACGCAGTTGATTTGGCGTTGGCATTTTTATGCGGGGATAATATTTGCCCCGTTTATTGTGATGTTATCTATTACCGGCGCGGTGTATTTGTTTAAGCCACAATTGGAGGATTGGCTTTATCGGGATGATTACTATATTCAGGAGCCTCAGAAGCAAAACGGCAAGTTAACGCCATCCATGCAGGTGGAGGCGGTGCGTAAGGTATACCCCTATGGGCAAATCACGAGCTATCGGCCGAGTGACGGGCCAAACCGGACAGCCGAAGTTGGGGTGATGGACAAGGGGCAGGTGGCAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGTGATTAGATGAATTAAATGTGATTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1382-1616 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000066.1 Laceyella tengchongensis strain BKK01 NODE_66_length_19148_cov_87.353480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1382 31 100.0 38 ............................... GTTCTCTTGTGGCAATGGCATCAACTCACCCCCTTCAT 1451 31 100.0 36 ............................... TTCTTCGCTTTCCACCCGCTTCCTCTTTCGTTCATC 1518 31 100.0 35 ............................... TTGATGTCATCAGCCGATAATGTGTACTTGGCAAA 1584 31 87.1 0 .T........A.T........A......... | GG [1610] ========== ====== ====== ====== =============================== ====================================== ================== 4 31 96.8 37 GGTTTAGTTGTAACCATAGTGGTATTGAAAG # Left flank : GATCGAGGGCCTAGTACAACACTGGCTCATCCATGTCTAGGCAAAGTTGACTCAGGCGGTGCGGCAGGAGTTACGAACAGTGTATTCCTAGCTAGTACTATTAATGAATAATAACTTGATTATTATCGAGGATTAGATGAATCTCTCTCAATGGTGCTGGTTATTTGGCCTCCTCTGAATGAATCAGAGGAGGTTGTTTAAGTGTCTGTGTGATTCTAAAATCAACTTACCGCAGGCTGAGGTTATCTCGCCCAAGCGAAAAAAAGAATATGGTAATGTCCCAGCTATGTAGCCGACAAATGTTATAACCGGGATAAATGGTATGATCCTCTTCACTGTCGAATGCGCCAACAACTTCTCACGGTTTGCAAATGGAGAGCACAAACCCAGTACTAAAAAGTCTGTGAACCTCCCGGGGTTTTTGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGTTATAATGAAAATGCTTGAAATGACTGATGTTCACATACGG # Right flank : GAGATTTTGTTTTTGGAAGATGCAAAGTTCTGCACCTATATGGTGATCAGTTTTCAACAACTTCGTTCCTTGGAATCTATCCGACATCCCTTTTCAAAACAATAGGTCTAAATAATTACATAACACAAAATAAACACCCTCGGTAATTCAAGTGCCGAGGGTGTTGCTTTTGGAAATGTAATTGGCACGATTGGACAACATATGCCTGTTGATACAAGGGGACAGTGAACGATTTCATCGCACCTAACTCTTGATTGAAGCATTCGTCCTTGGGAGAAATGGATTAAGAATGAGTAACATTTTATTTTTGTCAACATTGAGGATGACGAAGTTATGTTTTCATTTTGTTGAAGTAGGCATGGAACCGCTTTACTATATGGACAAGGGAATAATGATTACATTATTTAAAGTTAGAAAGGAGATAGGTTATGGGTGAATCTGTAAAACAGGCTGAAAACAACACAAACATTCGTGTCCGCATACAAAAATTTGGTAGGTTT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAGTTGTAACCATAGTGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 14094-15380 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000066.1 Laceyella tengchongensis strain BKK01 NODE_66_length_19148_cov_87.353480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 14094 37 100.0 36 ..................................... GAAAACATCAGCAGAAGCCGTAGGAGCTCAGAGGAG 14167 37 100.0 36 ..................................... TGGAAGCCTTGTTCCTGCTCTGGACGGATAGCGAGG 14240 37 100.0 35 ..................................... TTGCCTAACGATTTGCCTCGATTGGCCGAAAAATT 14312 37 100.0 38 ..................................... TTCTTGTCGTAGTTGCTTCACCTCCGCATACAGCGGAT 14387 37 100.0 37 ..................................... GAGTCTGGGAGCGGCAGGCGAGGAGCTACCGCCCGAG 14461 37 100.0 36 ..................................... ACCACAACTCGCAAGAAAATCATCGCCGCCGGACGC 14534 37 100.0 39 ..................................... CGCAGTTTGGAACGGGAGTTGGAGAACCACAGAAAGAAG 14610 37 100.0 34 ..................................... ATCCTCCCAATATATATTAGGTGTATCGGATCGC 14681 37 100.0 37 ..................................... TTTATTGGTTTTAAGCAAGATTCGTCCACGCAGTAAA 14755 37 100.0 34 ..................................... TCTAATTGGCCGCCAACCTTCCGCACAAAGAACA 14826 37 100.0 34 ..................................... TTGTACAAGGACTTCGCTATCGTCTGAATAGCCT 14897 37 100.0 37 ..................................... ATTTCCCCCAGCCGACTTGTCTTTCCCTCTCATATCC 14971 37 100.0 41 ..................................... CACAATCTCTACATAAACCATCCCTCACCTGAGTTGAGTAG 15049 37 100.0 35 ..................................... GATGTTTCCGGCTGGCAAGAACAAACGGAAAAGCA 15121 37 100.0 37 ..................................... TTCCACACACTCGAACTCTTCTCCACATACCCGCACT 15195 37 94.6 35 .........A..........A................ TGCGGGGTCTTCTACTCCAAAGACCAGTTTAAACC 15267 36 94.6 40 ...........T........-................ AGGGTTCCATACCAGACGCCATCTTTCATGATCTTGAACT G [15290] 15344 36 81.1 0 T........A..CC......-..........GC.... | C [15366] ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 98.3 37 GTATCAATGGAATACATCTCGATAAGAGAATTGAAAC # Left flank : AATCATTTATCGCTAAAGCGGAATGTCGTCCGATTAAAGAGATTGTACATATGCTTGGCAAACATTTGGAAATTTATAATCAACAGGTGGAAGCTTTTAATCATGATGAAACGCTTGAGTATGATATGCTGATTACGTATGAACGTATTCATGCATTAAACTGGGTATGTGGTTTGATAAGTAAATGGGATGACTGAGGTTGAAACATGGTACCCTGAAAGTGTGATGGGCTTGATGGTTTTATTTTCTAAATTATTTAGATATAATGAGTGGAGGGTGTAGGTAGTAAACTTAATGGCGTAGCTTGAAATGCGAACACCCATTGCTTCGGGAAAAAGCCAGGGGGTCGTCGGAAATGCTCAATGCCTTATGAATCAAGGGGTTTGCCATTTGGTGCTAGTATGATAGAACCGTTTTCTGGTGATGAAAACTTAATTTTTGGAGGGGTGTTCGGAAAAGGGATAGCTAGATGTTGGTTTTTACAGGTATCCGCGAACGCC # Right flank : CGGCAGGGAATCCATAAGCATATATAAAAACCGGCTGGAGAGATCTTCCTCCAGCCGGTTTTATTTCTTTATTCCTGATCAGATACAAACACATAGTGCTCGGCAAAGAACTTGTCCAAATCTCGCCCGCTGGTTTGTTCCATGATGCGGATAAAGTCTTTGGTGGTAGTGATACCGAATTTCTTTTGTTTGTAGTAGGCCTGCATCGAGGCGTAAAATTGCTTGTCACCCAATAGCTTGCGCAGGTCGTTCAAGGTGCGGGCGCCGTAATCGTAGACTGTGTCGTAGTAGGCGCTGATGCCTTCTTGACCGTAGGCGGTGAAATAGGAGATCGGATGGGAGAGATGGAATCCGGGAACCGGTTCGGCGGTGAGTTGGTCGAGTTGGTTGTCATAGAGAGCGGCGGCGAAAGTGGCGAAGGATTCATCTAACCAAGCCTCGTCATATTCGTTGTTGCCGATGATGCCGTAGAACCATTGGTGTCCGATTTCATGGGCATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAATGGAATACATCTCGATAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 4458-5892 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000133.1 Laceyella tengchongensis strain BKK01 NODE_133_length_6111_cov_102.387219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4458 36 100.0 36 .................................... TTAATAAAGATGGTTCTCTTTATTACCCGAAGCAAC 4530 36 100.0 40 .................................... ATGGATATTGGCAAAGAAAAAGAATTTAAAATCCAATCAA 4606 36 100.0 40 .................................... CCATACGGAACTCGCCAATGTCTTGTTCAAAGGCCCGCTT 4682 36 100.0 36 .................................... CTCTCAATAAAACAATGATCGGTGTGATGTTGCCAT 4754 36 100.0 35 .................................... ATTATGCAGGGGGAGCATCTCATGGAATTCGCAAG 4825 36 100.0 35 .................................... TTGGAAGACAGCAGCGGAGTGTTTAAGGGGATCCG 4896 36 100.0 40 .................................... CTTTTTTGGCGTTAAATACAATCATTAATCCGATCTACAC 4972 36 100.0 41 .................................... CCCGTTCGGGTTCGTGTTTAGTTGTATCCAAAAGGGAGGCG 5049 36 100.0 37 .................................... CTTCATTGTCAGTTGCCATCTGATCGCGTATCAGTTT 5122 36 100.0 38 .................................... GGAGATAGTACGTTTTCTCAAACTCTGTTTGACTTTGC 5196 36 100.0 36 .................................... CAAGGCATCATTTGTGTATGACCAACTGCTCCCGCC 5268 36 100.0 35 .................................... GAAAGTAAGTCAAGCTGAGGCCCAACTAGCATTCA 5339 36 100.0 40 .................................... ACGCTGATAGTCAGGTAGATGAAACGAAGTTCAACCAGGC 5415 36 100.0 35 .................................... TCTGCACTTTCACATTGCCGTTATGGAAGAAAACC 5486 36 100.0 36 .................................... TGGTCTGAAACGATGGCCCCGAAGTTATCAGATATC 5558 36 100.0 35 .................................... GTTTCCTTTTTTGAAACGTTGGAGCTGTGGCCGTT 5629 36 100.0 41 .................................... CTTCACACACCCTCATGTAGATTGACATCGCTGTCAAAGAG 5706 36 100.0 38 .................................... ATAGGAAAATCCGTGCTAGGCTTCTTAGGAGGCGCTTC 5780 36 97.2 41 ................................A... GTAACGCTTATTGGTGAATGGACAAAGATATTTGTTGTAGC 5857 36 86.1 0 ............G............T.A......GA | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 99.2 38 CTTTAAGTGATTAGATGAATTAAATGTGATTAGCAC # Left flank : CAATTTCAGGATCAAATCATGTTGGTACACATTGGTCCTGTTACTTCAGAACAATTGGAAAAACGAATTTCAACAATTGGACGAAAATATATTGCAATGGATTTGAAAAACCTTGTGTACTAGTATTTGATTGTATTTTCTAAATGTGGTAACATTAAATTTGCCTAAAGGGCAAAGAATACTGTGCGTGTGCTAAGGATGGAAAAATCCATTCAACCACAGGATTACATTATTTATCTAATCACTTAAATAAGAAGGTCTTGCATTATGCAAGGTCTTTTTATTTGAATAGAAGAAAGTGCTTAGAAGTAAAATAAACTTGCGAGCGCCTAGTGATGACAAAAAAGGCTTACGATCCTCGTAACCCTTTAGTATCAAGATGTATTCCAACTCATTGGTTTATTTTACTAACATATAAATTCATAAAAAGTGTGTTCTAGAGGAAGTGCTCGAATTTACAAGTGAAACTGCACGTAAGACAAAGGTTTTTAAGGAATACT # Right flank : GCTTTCGTTACTTGGTCTTGACGAAGTTGAAATAGATGCAAGAGGTAAACACACGGTAGAAGGGCTTGTACCCATCTTGTAGTGAGCAGAAAAGGCTGCCGTCAATCAGGAGGCAAACATAATTGAGCAATTGCTACTTGCAAAGATAAAAGCCGCCAAATGGCGGCTGAGGCTGCTGACAAACTGCCTTGAAAGGCAGGGTCAGCAGCCTTTTTTGTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGTGATTAGATGAATTAAATGTGATTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 35480-36988 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000009.1 Laceyella tengchongensis strain BKK01 NODE_9_length_50380_cov_90.661759, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 35480 37 100.0 42 ..................................... ATGGAATTTATGTCTGCGCCCCCGGCTACTAATAGGGGGGCG 35559 37 100.0 35 ..................................... TTGAGCGGTAGCGATTGGACGCCGCAGACGCTGGA 35631 37 100.0 38 ..................................... TACCGGGATATAAAACAATTCGCGCCCCGGTTCCTGTA 35706 37 100.0 35 ..................................... GCGGATTCCCAACTTAATCCGCCGTACCGTCTCGG 35778 37 100.0 37 ..................................... CCCAACCGAAAGCCCCATCACGAGCCCCGCCGAACCG 35852 37 100.0 37 ..................................... AGTGCAGGGGTACCCCGAGTCGTATAAGCGTCGTTTG 35926 37 100.0 36 ..................................... CTCACCGCCGAAGTTTTCCTCCTTGTACTGCCAAAA 35999 37 100.0 35 ..................................... AAATCCGGCGCCACCCGAACGAAAAACGACGTTAG 36071 37 100.0 37 ..................................... TAATTGACCGAATAAGGTTTCACCGTCTCTAACGTGA 36145 37 100.0 36 ..................................... GAAAGACAAACAAGAGGAATAAGAAAGGAGGTTTCC 36218 37 100.0 38 ..................................... CGGAAATTACGATGATAAACAATATAATGCCTGAGGAG 36293 37 100.0 37 ..................................... CGTCGCAGTAAAAACCGGGCACCCGTCAGGTAACTCC 36367 37 100.0 35 ..................................... CACCTCCCATCAAGTTCAAGGCCCAGGCTCAATTC 36439 37 100.0 37 ..................................... TCGGCTGGGACGATTAGCCGCATAAGTATCGCCGAGA 36513 37 100.0 34 ..................................... ATAGGCGCCTGACCGTCAAAGTATCGATTCATCG 36584 37 100.0 36 ..................................... TTTTTAACTCTGATCGGGCCCACTTGGAGTAGTACT 36657 37 100.0 37 ..................................... TCGGCTGGGACGATTAGCCGCATAAGTATCGCCGAGA 36731 37 100.0 36 ..................................... TTTGGCCATACGTTTTCTCATCTCTGCTTCATTCGC 36804 37 100.0 38 ..................................... AACGAACGCACCGAAAATAGGAGTTGATGAAACATGAT 36879 37 100.0 36 ..................................... GAATTTATCGCCACGATCTCGGAGCCTTTCAATTCC 36952 37 94.6 0 .......T.......................G..... | ========== ====== ====== ====== ===================================== ========================================== ================== 21 37 99.7 37 GAATCAAAGAAATACATCTCATCGAGAGAATTGAAAC # Left flank : TAGCCCTCTTCAACACCTTATCACTTATATTTTCCTCCATTATATTGAGAACTTAGACATCTAGCGCATAATCTAAGTTATTCTACAAATTAACCAGATAAGGGGATTTATTGTAATGTTGTCTTCATACATTTAAGCTCCAACCTTGTTCATTTTGATTAGGGTGTGTCGCTGGCTTATTCATCAGACAAGCCCTAGTACAAATCTAGCGTTTTATTATTTTAGAATGTAATTTCACCGAATAAGGTCAATATCATGAAACAAGCGATTAATTATGCTATTATAAATAATAGATGGCGCGACCAAATTTTGCGAACACCCCATGCTTCGGAAAAAAGCCAGGGGGTCGTCGGAAATCCTTAATGCCTTATGAATAAAGGGGTCTGGGGATTTTGAGACGTATTTTATCGGACATGTTAGGAGCATTTATATTCTTTTTTAGGGAGGTGTTCGCAAAAGGGAATAATCATGGCTGAAGGACAAGCGCTTCGGCAAACGCC # Right flank : CGTAACTGGATCTCTCATAAGAGAGATTTTTTGTTTTAGTTGAGGTGAATGATCAATTGAAAAAGCATGTGAAATATCGAGAGCGGCTATTTGCTATGCTTGCAGAATTATTACTTGATCCTGGACCATATAAAATTAAGGAGACGGCATTGCGTTATGGAGTCAGTGATAAACAAGTCCGCAACGATATCGATTATTTGAGAGAAAAGCTAAATACACCAAATCAAAGGGAGTATATCTCCAGATATCACGGGAAATACGAGGGTAACTTTTCAAGAGGCATTGTGAACCTGAGTCCGAAGGTTAGGTTATATCTTTTCTTAGCACTCAAGCAGGTTGAACCATTGTTGTTGAATGAAGGACAAGAAGCGTATAAGTTGCTGTTTCAACATGCCTGTTCTGTGTTGCCTAAGCAGGATATTGAGAGGATGAAAAGTTGGTCTAAGTTTTATCGAATTAAACAATTTGGTTACCCAAAGGAGCGAATTCATTTTTATCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCAAAGAAATACATCTCATCGAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 47925-49066 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000009.1 Laceyella tengchongensis strain BKK01 NODE_9_length_50380_cov_90.661759, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 47925 37 100.0 38 ..................................... TCTCCTGAATCCGCACTACTTTGGTCGGGGCGATTGGA 48000 37 100.0 39 ..................................... TCGCTTCTGATACGAGCAAACCAACGGGCGAGCGAGAAA 48076 37 100.0 35 ..................................... CCATGAACGGACTTCATCGCTGGATGGAAAAGGAT 48148 37 100.0 36 ..................................... AGATACTAAGGGATACCAAAGGATACCTAACGATAC 48221 37 100.0 35 ..................................... CTTCGCTATCATTTTTATCGTCCAAGATGGTTTTG 48293 37 100.0 36 ..................................... GTTTTGAATACCTCCCGTTTATGGCGGAGCGATATT 48366 37 100.0 36 ..................................... AAGCGTGAGCCGGAGGGATGCGACCCCTTCGGCTTT 48439 37 100.0 37 ..................................... GTAAGCGCTAACACAAACCTAAAATATAGGAAACGCC 48513 37 100.0 38 ..................................... GAATTTAATGTCGTCACGTACAGGCGCTAAGCCTTCCG 48588 37 100.0 41 ..................................... ATTGGCGCAATCTCCGCTTTTTCCGCCCATAGGTTAATGGA 48666 37 100.0 35 ..................................... GTAAACAATGCTAGATTGTTCGCGGCCCCAACCGG 48738 37 100.0 35 ..................................... CTCCCCACCGCGTGTTTCCCACTCGTCTTCAATTG 48810 37 100.0 37 ..................................... GCCAAATGATTACAAGTGACGACAAGCGTGGCTCATC 48884 37 100.0 35 ..................................... TTCCCCTTCCGTCAAATGTCCCCGAACGAATCATC 48956 37 100.0 36 ..................................... TCGTTTCAAATATCGTTCCTCTGTCCCATAGTGGTA 49029 37 78.4 0 .............A.........TCC.C..G..C..T | T [49052] ========== ====== ====== ====== ===================================== ========================================= ================== 16 37 98.7 37 GAATCAAAGAAATGCATCTCATCGAGAGAATTGAAAC # Left flank : TTGCCAGATCCTACCCTTTTGTTTTTGAGCGCTTTAAAAATTACGCATACAGGCAACATTGACTTTCCATACTCCATGATTCGGACCATCAAAATTAATTATGCTTCTTTCAAAACCGTGGTCGTCGACTTTGAAAAATTTCAAGCTATCGGGTTTTTGGGGAAAATGACTTTAAATACAAATAAATTGCCTCTTGAGGATCAGAAGTGGCTTTGGAAGTTAGCATGCTATGGTTCGATAATGGGGTTTGGCTATAAAACAGCCTGGGGGATGGGGCAAGTCAAATTAATTCCGCATGATAAAGCCATTTTGCGAACACCCAATGCTTCGGAAAAAAGCCAGGGGGTCGTCGGAAATCCTTAATGCCTTATGAATAAAGGGCTTTGGGGATTTAGAGTCGTATTTATACGACAGGTGATTGGGCAATTCTATCCTTTTTTAGGGAGGTGTTCGCAAAAGGGGGTGATAAATGTTTGAAGACAAGCATTTCGACGTACGCC # Right flank : TGGCGCTGTCTGTGGCGACGGCTGAAGGGTAAATAATTGATGTTTTGAAGCAAACCATACAAAGGGAGAGGAAAAAGTTAAGTGGTCAACATGATCAATTAGCTGAGAAAGGATTCGAAAATAGGGCATCAACACAAAAAAGGGCTCTTGGTATCAGACTATAAGCCCTTTTAAAATTTATTTAGGTAGGATAGCGAGCATCTAACTCTCATAATGTTGTAAATATTGATTTGTATGCACGATTTAGTGTTACGCATCAGTAAATAGTTAAGGTTTAGCAATGAGGGTATATATCATTGTATTTGCCTGTGGATTGGGTCTTGTTATCTTGTTAAACCAGATAATGATTTTTCCAGAAGTGAAGGTAGTTTAAGATGAAGGAGGAATATTATTGTTTATGGGAAAGTGGAAGATACCTACTATTCTATTAATATTATTAATCATGCATTTGAATATCCCCCATTTAGCATTAGCACAGACTCATACATGGTTGGGCACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCAAAGAAATGCATCTCATCGAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 1358-1056 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFE01000181.1 Laceyella tengchongensis strain BKK01 NODE_181_length_1429_cov_75.801310, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1357 31 96.8 36 G.............................. TATCAATATATGTACTCCTTTCTACAGGATATATTT 1290 31 100.0 36 ............................... TTTGGCGCTCAACATCATGTCAAATGTGGCGGTTCG 1223 31 100.0 34 ............................... CTCTTTTTCTGTTTCCGCAATGAGTTTCACATAA 1158 31 93.5 37 ..T................A........... TTACGGGATCATCGGATACTTTTTCCGATATTTTGAC TT [1151] 1088 31 90.3 0 ...T...........T..............T | A,T [1059,1081] ========== ====== ====== ====== =============================== ===================================== ================== 5 31 96.1 36 CGGGTTAGTTGAATCCATAGTGGTATTGAAA # Left flank : GATGGAGATAACGTAGCTTGTGAGAGTTTGCCGTAATTGGAGCTATCCTTTAGTGTAACGCACAAAAAAGA # Right flank : GGGTGTATGGATGAGGAAACCGTTCAAAAGATGACTTGCCTGATGTTGATTATCAGAATCAAAATAGCTGATGTTACGGACGGTCGCGGTGAAGTGCCAAGTTATATTTTGAAAGGAAGGTTGGTGTTTCGGATTAAATATTAATAATATTCTGCATATAATTAGGGTGTAACTACATCATTTCTTGATAGTAGGGGGGATCATATGCCAAGATGTCCTGCATGTGGAGAAAAGGAAAACATCGAAGAAACACACTCAGGTAACTATGGTTGCAAGGAGTGCGGGGAGACATTTGATAAAAACGGCAATCCCTATAAACATTAGTGGTGGTACAATGGGATTACCTATTAAGGTAGTCCCTATTTTCAAAGGTGGGAATAGCAATGGACAAAAAAATGTTGATAGATCATGAGGCTTTTCTTAAAGGAATAAAACCAGCCTTGTATCGAGCCTACAATCAAGGTTTGGCGGAGTTGTTTCCAATACTAAAAGAATATCCG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGGTTAGTTGAATCCATAGTGGTATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //