Array 1 11847-12680 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEDS01000048.1 Veillonella atypica ACS-134-V-Col7a contig00101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 11847 35 97.1 34 ............A...................... ATACCAAGTAAGAATAGAGTATCTTCGCAATATT 11916 35 97.1 38 ............A...................... TTATTCTTAACAGCTTCTATGAATTCTTTTGAATATCT 11989 35 97.1 40 ............A...................... GAGCAAATACTCCAGCTTCTCTAACGAAGTAGTTTTTAAA 12064 35 100.0 38 ................................... TCTGACTAGAGGACTTTAATACTAATCTTATTTAAAAA 12137 35 100.0 33 ................................... TTTCTAAAGAAGCATCAGATACTTTAGCTACAG 12205 35 100.0 37 ................................... TTGTTTGTATACTGATCATATTCGTAAGCGATATTAA 12277 35 100.0 39 ................................... TGTAGCTACATCAGTTGTTTTTGCACGTTGAGTTAAGCG 12351 35 100.0 42 ................................... CGGTCTTCAGGACCATCTGCGTCCTTCATTACCGCGTCAGCA 12428 35 97.1 38 .................T................. ACATCAAGCTCCATATCGCATTGGATATGGTCAATATA 12501 35 97.1 34 ..........T........................ GTTACAACCTCTCCTGTGAATTGACCATAATTCC 12570 35 97.1 39 .......T........................... AAGAAAGCTTGTTTCCAAGCTTCCATGGATTTGCTATGT 12644 35 77.1 0 ...A......T..C..T.AC.A............A | A,C [12673,12677] ========== ====== ====== ====== =================================== ========================================== ================== 12 35 96.6 38 GTTGCAACAGCACTTACCGTTTACGGTATTGAAAC # Left flank : AACAATGTAATGGAAATGCTTGGCAAATACCAATATCTCGTTTTGAATATAGAGGGACTATCTTTGGATATATAGATCAGGTAGATATGCCAAAACTACCTTCAATCAAAGCATATAAACAAGCATTGGCTCCGTATATGACATATATTATGGATTAAAGATTGTCAGTTTAGATTGTTGTTGATAATTAATAAAGAGCGAGTAGATTATGAATGTAATCTGTTCGCTCTTTGCAATTGCATGAGTAGACATTTACCAAGAGGAAAAAATAAAAACTCAACAGATATTATCTGTATTCCTGTTAAATATGATGAATGGAAAATGAATCGAGTTATTGACGTAAAATTGATAAACCCTTATAATAACTGTATCTTAGGAAATATCATTTTTCTCCAGTATTTATTTATATCCATAGGCCTTGTGGATCAAATGGGAGCGTGTTTTGACCGTTTACGGTATTGAAACTTTTACTTCTACAGAATACCCCTCAAAACTCTTGA # Right flank : AAAAACTAAATAATCTGATAGGAATACCCCACAAACACAAAGAAACTCTACCCTAGATCTCCTAAGGTAGAGTTTTCATCTATAAATCTCTATAATACGATGCTTATTGTATCGTATATTTGTTTGGTATATAATTAACATAAGATAGTTGGACGAGGTTGGGCCTCTCTTCGTTATTGAAGGGAGGGGTAAGCCTATGAGTGATTATGAAATCATTATGCTCCTATTACAGGTGATGACCATAGTTATCGCTTTTGGGGCGTTAATAGCGCTTATTTGTCTAGGAAAAGACAAATAGCCCTTCGTTATCTTTGATAATTTGATAACTGAAAGGCCATTTCTACATGTATATGTAATTTAGAGATGAGCCTGACGTGTCTGCTCGTCTGACTATCTTCTTATATTATAACGATGGTTGCATTCATCGTCAAATATAGATGATCACAGTCGTTGTTGCTAGGATATTAATAGAGTTTTTTGTTTAGAAAAAGAGAAATAGC # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGCACTTACCGTTTACGGTATTGAAAC # Alternate repeat : GTTGCAACAGCAATTACCGTTTACGGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 16448-15914 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEDS01000067.1 Veillonella atypica ACS-134-V-Col7a contig00039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 16447 35 100.0 40 ................................... CTTTAGACTCAAGTCCATAGCTCTCTAAATCATATTTATA 16372 35 100.0 35 ................................... CCTACGAACATACCAACAATGATTAAAATCATTGC 16302 35 100.0 33 ................................... GATCTTTTCTATGAATTATTTTATTAGCTTCAT 16234 35 100.0 39 ................................... CACATAAATTTACTTTCATTTCTTTAGTCTTATATGAAT 16160 35 100.0 35 ................................... AATCGTATTTAAGTTCTTCGATCTTCTTCTTTGTT 16090 35 97.1 34 ................T.................. CATATCTTCTTTCTCCTCTACAGGTTTTTCTTCT 16021 35 100.0 38 ................................... TCCATGGAAGTGAATTGTGGTTGCATAAGCTTTGGATC 15948 35 68.6 0 A......T.....C..T......GT.G.A...TGA | ========== ====== ====== ====== =================================== ======================================== ================== 8 35 95.7 36 GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Left flank : ACTGTAACAGTAGGAACAACAATATATCAGGCGACACGGGATTAGTTAAAACTCTGTAATAAAAGGAGGTGTTATATATGATGCCATCAGTCGATCTTGGTTTAGTTCATGTATGTGTTGAGGTATAATTTTGAAAGTAATAAGTGAATATAAGAATCGATAGACCTATTCGTATGATGTCATATGGATGGGTCTTTTTCTGTATATAATCGAGGCAAACAGATTTTCTGCTACCTTATAACGACTAAAACTAGGGATAAAACTAGATATTACGTGTATTTTGTAAAAAATAGACATTTTGGAAAACCTACCCTCATATTGACGTAATTTCAGAAAACCCTTATAATTACTGTATCTTAAGAAAAATCATTTTCTTCCAGTATTTACCTATATCCATAGGCCTTGTGGATTAAATGGGAGCATGTTTTGACTGTTTACGGTGTGAGGTTTTCTAAAACCTATTTTTTAGCCCCGTGAATACTGGCTTTGTAAGGCCTGCT # Right flank : AGATATCCACAGAGTTTTAGCCATTGTATTCATCCAGAAAAACTTAATTAGTGCAATATCTTTTTTTGTGATTTTTAATAACATAGCGTAAGCAAATACCCCTAAGTAGACAGTCGTGTTTACTTGGGGGTATTTTGGTTATTTTAAAATTTGGTTTTAGCATAGAAATTATTAAGCTAATTTAATGTATAGTATTACAATTATTGACGGAACTTTATGACTACCCTATAATTAAAATTAATAATTCATGAAATTCTCATGATTTACAAAGTGTTTGTAAATGGTTGAGGTGGCATATGGGGACACATAATTTTTCAAGATTAGAGACCATAAATCCTGAGATGTATAAAATGGCTACGGATTCTGAACGGTATTTGTATGCAGATCATCAAATTGCATTAGTTAAGTTGCGCGTGTTTGCTGAAAGTTTTACTAATTATTTGTATAACGACTTACAGTTGCCTAATAATCCTAATGAAAACTTTTGTAGTAAATTACAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 9252-11402 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEDS01000047.1 Veillonella atypica ACS-134-V-Col7a contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9252 36 97.2 30 .....C.............................. TTAATAACCATGAAACACGCATTACAGATT 9318 36 97.2 30 .....C.............................. AAAGGTTACATATTAAGGAGGTAGCAAAAT 9384 36 97.2 30 .....C.............................. TGATACATATAGTTATGTAGGAGATAACGT 9450 36 97.2 30 .....C.............................. GTCATAAGTCGCTACAATCTAACCGCCGAT 9516 36 97.2 30 .....C.............................. GAAGTACTTCGCCTTGCAAATGTAGCACGT 9582 36 97.2 30 .....C.............................. ACAAGTGATTGATTTCGTTAAATCGGTAAA 9648 36 97.2 30 .....C.............................. TTATATTCGATGATTACAAATACGAAAATG 9714 36 97.2 30 .....C.............................. AGCAAAGGAAGAGGCTGACGCGGCGAAGAA 9780 36 97.2 30 .....C.............................. GCCCACCTACAAGAATGATAATGAAATTGT 9846 36 97.2 30 .....C.............................. CCACAAAAGAATGAAACTTTCAACGGATTA 9912 36 97.2 29 .....C.............................. GAAAAATAATGCGATTTAGAGATTACCTA 9977 36 97.2 30 .....C.............................. GGATTCTTTATTCAAGATATAGATTGGTGG 10043 36 100.0 30 .................................... GATGCTGAACGAGCAAAAGTTATCATTGGC 10109 36 97.2 31 ...................................A CTTTCAAGTATTTTTCAACCATTTTGTCGAA 10176 36 100.0 30 .................................... ATATGGTGTTAAACAAGAGATGTTAAGTCG 10242 36 100.0 30 .................................... CCTAAGCCTTTAACGTATACGTCTTTGGAT 10308 36 100.0 30 .................................... GCCGTTATAGTTGGGAAAGTTCCGCTAAAC 10374 36 100.0 30 .................................... ATGTTGCTGCATGAAAGCGGTGAATGGTTG 10440 36 100.0 30 .................................... AAGATTATAGGGAATTAGCAAAAGAATATT 10506 36 100.0 30 .................................... ACGCATACTCATGTTGAAACGTGGTGACTT 10572 36 100.0 30 .................................... GCATCTCTTTTCATCTTTACCATAAACTAC 10638 36 100.0 31 .................................... GATAGCGCAATACATTGGCCGTTATAGTTGG 10705 36 100.0 30 .................................... CGTTTGAGGTCCCATCATAGGTGCCTCATA 10771 36 100.0 30 .................................... AAGATTATCGAAAGAATGACAAAAGATTAA 10837 36 100.0 30 .................................... GCTAAAATCGATAAGTCCCTACTCGACATG 10903 36 97.2 30 .............................T...... CATTCAAAGCGTATTCTTCCTCGGACACCT 10969 36 97.2 30 ........A........................... GTTCTACCCTGACATTCGATTGACAATGAA 11035 36 97.2 30 .............A...................... CAAATCAAAGGAATGCCCACTTACACAAGT 11101 36 100.0 30 .................................... GGAAGTAACTGAGGGTGCATTAACAGATAA 11167 36 97.2 30 .............T...................... GAGTTGCAAAATATAATATCAGATATGCTA 11233 36 97.2 30 ...................T................ AGCTATCAATGAGACCCTAGCGACAGACCA 11299 36 100.0 30 .................................... GCAGTGGAACGAGCTCAAGAGCAACAACGA 11365 36 86.1 0 ......A..........C.......G.A.......G | G,A [11392,11395] ========== ====== ====== ====== ==================================== =============================== ================== 33 36 98.1 30 GTTTGAGAGTAGTGTAATTCTGTAAATCTCTAAAAC # Left flank : AACTAAATTACAAAATCAACTGACAAAAGAGGCTTTATTAATGACTGAAGAGGTAGCTGATATTGTTAATCGGCTTCATGCATTTTATTATTCCTTAGAATTTGGATATCCTTTATCAATTCAACATAAAATGGAAATGGGTGCTGCTGAGATTATTAAATTAGGTAGTTTTAATTTCGAGTTTAATCGTAAAGGCGAAGTCATGGACCTTATGTCCTATATTGAAGTGGTTGATACATTACTATCTCCTATGATATATATTATGATAAATTTAGATTTAGTCTTAAATGATGATGAAATAAATGCATTTTATCAAAATATGCTAAGCCGACAATTACGATTAGTTTGTCTAACAACTGGATCATTTGATAGAGAAAGCCTTGATAAAAATCTTATTAATGGGTATATTTTAGATAATGATTTTTGTATTATTTAAAGAGAATACAGGATTACACCTGGTGGTAGCCCGAGTTACTCTTGAGCCTCAAATTTAATTTGGG # Right flank : GAATGTATAGAATTGATGATATAAGAATATATAGAGCTGATGACAAAAAAAGTAGCATTACTATAAGTAATATAGACCATTGGCAAATGCCATCTGTGTCTATATGTTAGTAATGCTACTTTTATTCTGATATTGAATTTATTCTGTTAAAAATTTTATTACTTTAATTTCGTTAGATATGCAGTTAGCATGTCTAGTCGCTCAGCAAATAATGTTTTCATCATAGTAAGACGATCTTCCGTGATATTTGAATTTTTTGCATATATGGAATCCATCAATTCCATTGCTGTTTTAGACAATGACTGCGGAATTGTTAGTGGTGTTGTTACATACTTTATTTGTTTATCATGTTTCGATTTAAACGGTAATGATGGATACGTATGGAATGGTCTATGTGGATTAATCGTCATTTCGTTGTACCATAGGGTATTGCCATTATCGAAGATCGGGGCCATGCCAAGGAATTCAAGTGTTGTAGAATTCCGTAAGAATCCAAAGTT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGTAAATCTCTAAAAC # Alternate repeat : GTTTGCGAGTAGTGTAATTCTGTAAATCTCTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //