Array 1 49922-51013 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJC01000018.1 Clostridium botulinum D/C strain CP05_DC contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 49922 36 97.2 30 T................................... ACAGCTTTTGGGATATTGCCATTGGTAAAA 49988 36 100.0 30 .................................... TTAGCAGAAACTATACTAATGAACATATGT 50054 36 100.0 30 .................................... AATAGGAAAGCTCCACTGGCGGAGTTAGGA 50120 36 100.0 30 .................................... AGCAAAACAGTTATTATTGCATGGAGAAGA 50186 36 100.0 30 .................................... AGTACTAAAGATGCTAAATCAAGAATAAGG 50252 36 100.0 30 .................................... ATTGTAGCAGATAGTGCTGAACCTAGAACA 50318 36 100.0 30 .................................... AGCTACAAAATAGGGTGTACCAAAAGGGGT 50384 36 100.0 30 .................................... GTTCTTATAGGAGATTCTTCAGCACTATAT 50450 36 100.0 30 .................................... GTAAAGATGGGTTTAGAAATGAGTGTAAAT 50516 36 100.0 30 .................................... TATTACATTAAAGCAACTGCAACTGTTACA 50582 36 100.0 30 .................................... TCATAGCAAACAGAATATACATCCTTAGTA 50648 36 100.0 30 .................................... CTAACTTATGTGCTAGAATTTATACAAATA 50714 36 100.0 30 .................................... AAGGTTATTGAAATTGAAAGTGAATCATTC 50780 36 100.0 30 .................................... AAGAAAATACATAAAGAGTTGAATTTAGAT 50846 36 100.0 30 .................................... TGCTTCTTTAGATAAGCTTCCTCTATTTCT 50912 36 100.0 30 .................................... GAAAGGATTGGAGACCTGGAAGGCAAATAA 50978 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : TTCCTTGTTTTTAAAAAAAGTATTATACATTTTAAATTCTTCTTTTAATGAAGCATCCATAACCTTTAATTCTCTCATAATTACAGTTGCTCTATCAGTAGAAAATTCCTCACTATAACAAAAAATATCATAGAGCCAATCTTCAGAAGGTATTGGCTTTTCCATATTTGAATACACAAGTATATTACTTATTGTATCTTCTTTTTCTATATGATATTTAGCCCAAAAAGCATTTTTATCTGTTAACTTAATAATTTTAACATTTTCTATATCAAACTCATCTATATCTTGAGCGAAATCTTCATTACTGTCATACCAAAAAACAATATGACGCTTCTTTCCATCACCTAATGGCTTTGAAAATATCTGTTTAAGAAAATTTGTTATTTCATGTAGATTCATTAAATCACCTCTTACTTAATATGTACTATTATAACAAAAAAACAACTACTTGTTATAATAACACCCTATTAGCTATTTATTATTTTTAAATTATATTT # Right flank : TATTAGTCATGAAAGCCGTTGGAATACAGTGATTTTAACGGCTTTCATGACTTTAAAAAACATTTAATTGACTTGAATTTATATTCTTTTCTTCCGGTTTTGGTGATCCTACTAAAAACTTCATTTCACAATATTGCTTTTCAGTAATTTGTAAATATCTAACCGAACCTTTAGGTGGTAAATTTCTTTTCAATCTTATAATATGTTTATTAGCTCCATCAATTCCATTACATATCCTCGAATACACTGAATACTGAATCATTATATATCCATCATTTAATAAGAATCTTCTAAAATTCTGATACTCTTTTCTATCTTCTTTTTTTACAACAGGCAAATCAAAAAATACTAGTAATCTCATAAATCTTCTACTCATAATAATGATACTCTAATGGTTTTATTATAGGCAATTTTAATAGTCGGAAATCTTTTTTACTACATGCTGTTGTATATGAAGATATCATTTTATCAATTGCATTTAAAATAGAATGACTTTTCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 665-954 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJC01000090.1 Clostridium botulinum D/C strain CP05_DC contig_90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 665 29 100.0 36 ............................. GATTTTAATTTTAGTAATGTCGTTAGTATATGATTA 730 29 96.6 36 .........A................... AAATCAAATGGAGGGACAAGGATGGTATGGTTGTTA 795 29 100.0 36 ............................. TCTACAATAAGACTAAATGCTATTCCAACAACTAAA 860 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 926 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.6 36 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : AGGTTAGTTTTAATCATTTACTAGCGTTAATGATATTAGCATAGGAGAAATATTTGATAATATTTTTGAAAGTGGTGATTTCATTGATTGGATATGAAAGCTTATATAATGAAGACTATTTGCAAATAGGAAAAGGGAAGTAGTTTAGAGTAAAAATGTACATAAATACTTATTTTAATATATATATACAAATATAGAAAAAATTTAACAATAATATTGAAAAATAATTCTTAAATTACATAATTATAGTATAATAATAAAATAGAAGGGAGATGAAGATAATGGAATTCAAAAAATTAGTATTAACATCAAAAATGGCTCATTTTAAAAATGGAATTAATGGAAAAAATCAAAATACTTTTAGAGTTCCTCCCATATCAACCATAGTTGGTATATTAAAAAACATCTATGGCAAAGACATTAAAGATTTTATATTTGGATACACCTGCAAATATGATGGTATTTTTAAAGATGATAGTCAGGCATAATATGTTCTATTT # Right flank : CATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATGATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATACTATAATAGTGCAAAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 265-1285 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJC01000047.1 Clostridium botulinum D/C strain CP05_DC contig_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 265 29 100.0 38 ............................. ACAAAAATATGTTTAGATATATTATATTCAGATATTCC 332 29 100.0 36 ............................. AATTTTCAATAGGAAGGATGATATTATGAGTTTTTA 397 29 100.0 36 ............................. TCTATTAATACATCTATATATTGCATGATTTCTTTG 462 29 100.0 38 ............................. TTCCAAATAAGTTCCTTGGGCATGAATAGCTTTTTCAA 529 29 100.0 37 ............................. AATAAATAAATATACAGACAAAGAGGGAAAAGACAGA 595 29 100.0 38 ............................. CATTAAGTTCACAATCTACTATTTTTGCGAACTTATTT 662 29 100.0 40 ............................. GTCTACTATAAGAAAAAGATTTAAAAAAACGGGATATTTA 731 29 100.0 38 ............................. AGATTCGTTAAAGGAATATTTGATTTTTTAAGTGGTGT 798 29 100.0 36 ............................. GGCAAGGCAGAGGATATAAAACTGCCTACACATAAA 863 29 100.0 37 ............................. TTAAATATATTGTTTGTAATTTGTCTTGAGCTTTAGT 929 29 100.0 37 ............................. ATTGAGTAGATGCCCTAATTTATCTTGAAATGTACTT 995 29 100.0 36 ............................. AAATCAAAGGATGGAGATAGAATGGTATGGCTTACA 1060 29 100.0 38 ............................. TTATGTATTAAAACAACTACTGCTTACGCTGAAAGCGA 1127 29 100.0 37 ............................. TAAAAACTTAGGAGGAGTTGAAAATGAAAATAATAAA 1193 29 100.0 35 ............................. GTTGATAATTTGCATAAACTTTTCTACCTCTTCGC 1257 28 82.8 0 ................TA.G.-...G... | T [1281] ========== ====== ====== ====== ============================= ======================================== ================== 16 29 98.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : TTTGACTTTTATTTATTTTCAAATTATTTTCCTCCATAATTAATTTTAATTTATGAAGATCCTCTAACTTATCTATTTGTATTTCAGAATTAATATTCATTTGTATAATCATAATTACCTCCAGTTTATTAAATGTTGGTAATTATAGTATTATACATAAATCTAATTCTTACATCCTTAGATGATCACTTTCTTGCATTTCCATAATAGCACTTATAATATGTAAATGTTATAAGCAATGGAAGTAAGCAAGTGCAATTAAAAG # Right flank : AATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30442-31123 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJC01000036.1 Clostridium botulinum D/C strain CP05_DC contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 30442 36 100.0 33 .................................... ATGAAAATGAATCATTAGAAATATTTTTAAAAA 30511 36 100.0 39 .................................... ACTTACAATATTTGAAATCCATTGAAATCCATCTATAAC 30586 36 100.0 35 .................................... AGTATCCCAAATTTCCATAGGCATACCTTTTCTAA 30657 36 100.0 36 .................................... TCTATATCCTTTTTCTTATTATCAATATCATCCTCT 30729 36 100.0 36 .................................... CTTGTATATTTCTTTTGATCCCAAAGGGGCTTTCTT 30801 36 100.0 35 .................................... TTATATAATAAATCTAACAATAATTTCATTCGTGG 30872 36 100.0 37 .................................... TTACTTGTCACAATAAAGTGCATCCGGAGAAATTAAA 30945 36 100.0 36 .................................... AAATTAAAAGATAAATTATCAAGGCCCTCAGATAAA 31017 36 100.0 35 .................................... TAAATAATGCTTGATTAAGCATTTTCTTGATTTGA 31088 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 100.0 36 GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Left flank : CATTAATGAAAGAAATTGAATATATACCGTTTTTAATTAGATAAGATAGGAGAAAATGTGGTATGATGTATTTAGTTAGTTATGATATTGTTAATGATAAGAAAAGAACAAAACTTCATAAATTGTTGAAAAACTATGGTGTAAGAAATCAGTTCAGTGTTTTTGAATGTAATTTGGATGATAAAAAGTATGTTGAACTTGTATATAAGATTAACAATATTAAAGTAGAGGCAGGAGATAGTATAATGATTTATCCATTATGTTATTCTTGTAAATCAAAAATAGTAAGAAAAGGTTCATTTATTGAAATAGATGTAAAAAATATGATTTTTTAATGCGCCAAGCTTAGTGTTTGAAAAAGTACGTTGACATGGCGATGGCTTTAAATAGCCATTTGTAGATAGTTTTTTATAGTATTGGTATAAAATTTAAAATAATAATAGATACTTTGCGAATAATGCGGGTCTATGTTAGTGTTTGTGAGGGATAAAACGCCGGCG # Right flank : CTTTTAGAGGGCGGAATGACCTATATACCAACGGGTGTAATAAAGATATTAAGTATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATATAAGAATTAGATTTATGTATAATACTATAATTACAAACATTTAAACTGGAGGTAATTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //