Array 1 306405-306624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPQ010000001.1 Listeria innocua strain FSL L7-1663 NODE_1_length_1459899_cov_62.704048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 306405 29 100.0 35 ............................. ACGTGCGTGGCTCACTATGCAAAAGATCGATCAAC 306469 29 96.6 34 ..........T.................. AGAGGTCCTGTAATACCTAATAAAGCCAGCCCGA 306532 29 100.0 35 ............................. ACAATAATTTTTCTCTTTTTATCCATTTTTCCGCG 306596 29 72.4 0 T...........C.CCA......AA..G. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 92.2 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATTTCCATTGGACGAATCCTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAGGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAGCGTAAAAAAAACCGAGACTGACAGAAAGTTGTGAATGCTTGGAGGAAGCCGAGTTTGGAAATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATTTGATTTTGAACAGGTCGACAGAAACAGCCTTTTAAGGTAAGATGGGAGTAAGAAGAAAACGCACGG # Right flank : TCCAATGTGTAATTTTTGCTCACATTTAAAAATTACAGTTTTAAATTAACTCCCTAAAAAATGCCTTTAACAACCATTGACATTTACCAGCTATCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGGAGTAACGAAAGGAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTGATGATGAATATGTCGCGGTTGAAAACTATATTGCGCTTGAAAAAAATGAAGAATATACCTT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 322734-325217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPQ010000001.1 Listeria innocua strain FSL L7-1663 NODE_1_length_1459899_cov_62.704048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 322734 29 100.0 36 ............................. GTCAATTGACTAATGCGTGCCGATACTCTTTCAATG 322799 29 100.0 36 ............................. TGAAATTCTTCGGGACAAAGATTGTAACCAAACCAA 322864 29 100.0 35 ............................. CGTGATGGAGTCATCCGTAAACGCCGAAACTCTCA 322928 29 100.0 35 ............................. GAAATTCTGCCTATTATATCCGGTTCCGGAAAAGC 322992 29 100.0 36 ............................. TTCCCATTGTCGCGCTCAAAGCTGTTTAATTTGTAT 323057 29 100.0 36 ............................. AATAAAATAAGAACATAGTCCACAACTCGTTGTGGC 323122 29 100.0 37 ............................. ACTCATAGGCAACGCCGTAAATTGCCATGTCAAGTGC 323188 29 100.0 34 ............................. TCAAGCGGTAATCAATCTTATCACGATCTATTTT 323251 29 100.0 35 ............................. ACAACTAAAAGGTGCGATTGGTCGAACGAGTGCAA 323315 29 100.0 37 ............................. AGCTACAAATTGGATGTATACAGGTATCACGAATGAA 323381 29 100.0 36 ............................. ATGGTTCTAAGTTCTCTAAATAACAAAGGTTCTTAT 323446 29 100.0 36 ............................. GGAGGAATACTTTTCCCTGCTTTTAAAAAGATTAAG 323511 29 100.0 36 ............................. GCGTTTAAACCGGATTGCAAGATATTAAACATTTCA 323576 29 100.0 36 ............................. ATTCACTTCCTGTCCGTCTAAAGCTTCTAAGAAACC 323641 29 100.0 35 ............................. AAGCAACGTAAGGACTTGTATTTCCTTGCGAATAC 323705 29 100.0 34 ............................. GTTAAAAACGGTGTATTCAATCTTAAAACAAAGA 323768 29 100.0 35 ............................. CTGCCTATGGGGTTCCTCGATGGATTGGTAACGTA 323832 29 100.0 35 ............................. GACAATCTGTCTTTCATTGTATTCATTAATTTTTC 323896 29 100.0 37 ............................. TTAGATGTAGATGCTGATTATGATGATAAATTTCAAT 323962 29 100.0 34 ............................. TGAATGTAACATATCTACTATTGTGTTTCATTCG 324025 29 100.0 35 ............................. AGTGCTCCAAGAACAAATGGTGGAACAACTACAAT 324089 29 100.0 34 ............................. TTCATCAAGCTATCAGGATTTCCAATGACAAAGA 324152 29 100.0 34 ............................. AGAGCAAAGGCTGGTCATTGTATAAGCTGGCAAA 324215 29 100.0 35 ............................. ATCACATTTAAGTATTTAGAAACGCCAGGTTTAAC 324279 29 100.0 36 ............................. GTAATTAATTCAGTAGCTGACTTAATACGTTCAATG 324344 29 100.0 35 ............................. TCTAATCTCACTGTGTAATCTCTGCTTTTGATTTC 324408 29 100.0 37 ............................. CTGTTTATCTGTATACACACATACTATTTCGTCATTG 324474 29 100.0 36 ............................. TAACACAGAACATAGACATTTTCATGTTGCAGGTGT 324539 29 100.0 36 ............................. TGGTTTTCATCTTTGAATTCTTGGTGTACTGATCCC 324604 29 100.0 35 ............................. AAAGGTTCGGACTTGGAGAAAGTAGCCGACTATTT 324668 29 100.0 36 ............................. GTTGTCCATATGTCTAATTCTTTGATATACACTATT 324733 29 100.0 36 ............................. TTCTGTTTGGAAGTAGCTGTGTCGGCAGCCCAAGTC 324798 29 100.0 34 ............................. TAAAAATTGATATTATTGTTGGACCAGAAGCACG 324861 29 100.0 35 ............................. TATTGTACTCACCTAAATCGTGATCAAGCGATATT 324925 29 100.0 36 ............................. TTTCAACTGAAGCTACATGTACATGAATATTATCTG 324990 29 100.0 36 ............................. TTTTTCCACCTCCAATCAGCTATATAGTGGTACTGC 325055 29 100.0 39 ............................. CTCACTTCCACACCTCGCATTCTGTGTTTGTTTCGTTGA 325123 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 325188 29 93.1 0 .......................A....C | C [325211] ========== ====== ====== ====== ============================= ======================================= ================== 39 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCCAAAATAAAAAAGGCCAGGACCCCAATCCAAGCCTTTTCCTACACTTCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTTGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCGGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTGGCTGCGAGTTTGGTATTGGAGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 475278-476170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPQ010000003.1 Listeria innocua strain FSL L7-1663 NODE_3_length_481441_cov_82.910884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 475278 36 100.0 30 .................................... TGCTAAAGTTTGAGGTGTTAAATCCGTTAG 475344 36 100.0 30 .................................... AATGAACATATGAAACAACTTTGATAAGAA 475410 36 100.0 30 .................................... TAATCACTTAGTAGATATAGAGCTTATTCT 475476 36 100.0 30 .................................... CGGGGGATACGTGATATTCCGAAAAATAAA 475542 36 100.0 30 .................................... GCAGACATCGTCGCAACAACAAAAGTAGTT 475608 36 100.0 30 .................................... TTATACCACTTACAAAGTTGGGGTTATTAA 475674 36 100.0 30 .................................... AAGAAATATGGGAAGTTGGATTTGCTAACT 475740 36 100.0 30 .................................... AGTAAAATTGGCTGTTTTTTCGTCAATATT 475806 36 100.0 30 .................................... TTACGCATTTATGCCGAAGCGTTGAGAAGG 475872 36 100.0 30 .................................... TTAGCTTTAGTAGCTTCATTTACAAGTTCG 475938 36 100.0 30 .................................... CTTACGAAGTTTCAGAACTTGATGCTATGA 476004 36 100.0 30 .................................... TGAACAAAAAGCACAACAATCGCAACAGGA 476070 36 97.2 30 ...............A.................... GATATTCATAATATATGAAGGTCGGTGACT 476136 35 83.3 0 T.............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTGTTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACAAGAGTTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CACTATATTCGAAAATAAGACAAATTTTATATATCAAAACGACTTAGAATTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAATATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGCGAAGAGCAAAATAATGAGTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACATCATGGAACGGCGAAGAAAATTTACCTCTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACTTTTACATATATCACTTAAAATAAAAAGGAGACTCCATTCATGAAAAAAACCTCAATCATTTTTATTTTATGTATAACCGTACTACTGACAGCATGCTCCACCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //