Array 1 42971-41684 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALND01000019.1 Streptococcus suis YS67 Contig00019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42970 36 100.0 30 .................................... TGGCCAGCGGCAGGCAATAACGACTTTTTG 42904 36 100.0 30 .................................... TCAGCACGTCTCATTCTTCTTTTGAAGCGT 42838 36 100.0 30 .................................... CTGATTTTAACCAGTCACTTATCAATCAAT 42772 36 100.0 30 .................................... CAGACAAGAAAGAAGTCTATGATAATTGGT 42706 36 100.0 30 .................................... CATAACCATTCCATTCGTTTAGTAAAGCGT 42640 36 100.0 30 .................................... AGAGTTGCTTCTAATTATCAAAACCGAAGG 42574 36 100.0 29 .................................... GAACTACGCAGATACCAAAATTGCCGAGT 42509 36 100.0 30 .................................... TTCCTCAACGAGCTCACCCTCGTTATTAAA 42443 36 100.0 30 .................................... TTACAAGAAAGAAAACGCACAATCACCAGC 42377 36 100.0 30 .................................... TGATTATTGAACGTTCGTGGGGATTTCCGT 42311 36 100.0 30 .................................... TGTATATCGCCCAACATTACCAGCAGTAGC 42245 36 100.0 29 .................................... CGTTTCCAAGTGGAACACACAATCAACTC 42180 36 100.0 30 .................................... CAATAGGCAAACGCTGGATTGAGCATAAGA 42114 36 100.0 30 .................................... TAACTCAACAACAAATCAACATGCTAGCTG 42048 36 100.0 30 .................................... TGGAGGCTGATTAGCCATACTCTGTCCGTA 41982 36 100.0 30 .................................... GCCAACTCATAAAACTATTTAAAGGCTTGG 41916 36 100.0 30 .................................... GTAACAACAGTTGAGAATGTAGTCGATGGA 41850 36 100.0 30 .................................... TACCCTTTCAATTCACGTCCGGTCGTTTCT 41784 36 100.0 29 .................................... CAGTAGGTCTCTTTACTATACCCATTTTA 41719 35 83.3 0 .......................T..T.-....TCA | T [41695] ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGCTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAGATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTTAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTAGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGTAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTAGATACCCTAGGTGCCTTCAAGTTGCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //