Array 1 2783-2573 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWHB01000213.1 Suttonella ornithocola strain CCUG 49457 IonXpress_016_rawlib.basecaller_c213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 2782 29 100.0 31 ............................. CAGGGGCGACGGATGCTAATCAATCATGAAG 2722 29 96.6 31 ............................G TTCTGTCCTAGTGATTATCTATAAACATCTC 2662 29 100.0 31 ............................. GTGTAAGGAGTAGGACAAGGTCTATAACGAT 2602 29 100.0 0 ............................. | T [2579] ========== ====== ====== ====== ============================= =============================== ================== 4 29 99.2 31 GTTCCCCGCCGCATAGGCGGCTTAGAAAT # Left flank : TATTTTAGGCATATATAGCCAACTTCCCAAAAAATGCATACAACGCATAACTTAAGTATACACTTTACAAACAGCATTCTATCTCTAAGTGCGGTATGCATTTTTTGGGAGCCCTGCTATAGTGCAATCAGCTAAAAAGTGAACTGTTTAAAAACCATACCAAGCAGCTCTAGTAGTAAATATAGCTAAATGTCTCTAACTTGCATGCAGCGTTAGCTCTTTTTGCCATACTGAGGTTGGCTGTTTGTGGTTCGTCAGTTCATATGCAAGCTAAACTCATTCAGCTATAATCCAAACAATCATTTTTGATCATAAAACCCTTTTTTAGCTGCTCTTTAACAACCGAATAAAAAACAAATACTTGCAAAAAGCAAAAAAACAAAAGGTCAACCAACAAAAAACCTTTAAAACCCTTGTGGCAAGTGCATCAAATCGAATAAAATTCG # Right flank : AAACCAGCACCTGATGTAGTCACCATATATAGCAGCTGAATGTCTTTAATTCGCATACAGAATTTGAACGTCTTTCCGTACTAATGTGTGCTGTCTGTGGCTCGTTGATTTGTATGCAATCTGAACTTATTCAGCTATACCGTTCTGACTTTTAGCTGATTTAACGATCATTGCTAGAATAGTCAAACTAATAAATGTTATGCTATAACAATTTATTGGTTGGAAAATGCGATGTACAATGCCTTAATTACGCAAATCTCTCAATGGCCACCTACCGTTAAGCATGAAATCATCAATACTTATCAGCATTTTAAACGAGGATATCGTCCTAAAATAAGTGAATATCCCATAACGAAATATTGCGATTATTATATCCGAGCAGATGAAGAAGAAATTGTAGCTTGTTTTGGCTGCGAAACCTATCAACCAACCGAGCATCAAATTTTATGGAAAACATCTAGTATATCTTTGGCGCAATCATCAGCTACTTCGCTACAAAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCGCCGCATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48897-48569 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWHB01000012.1 Suttonella ornithocola strain CCUG 49457 IonXpress_016_rawlib.basecaller_c12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 48896 29 96.6 30 ............................A TATTGTTGTGGCTTTTCTTTTAATTCTATC 48837 29 89.7 31 AG..........................G ACTGTTGAGCCGTCAGGCAATACGGGTTCCA 48777 29 100.0 31 ............................. AAGCAAGCCTGCGCATCTAAATACACCATGA 48717 29 96.6 31 ............................T GCTTAGTGTCGGGCTATGGCTCAACCCCACC 48657 29 100.0 31 ............................. AGAGGTTAGCCATCGGAAAGCATTTCCGCTT 48597 29 93.1 0 .............C..............A | ========== ====== ====== ====== ============================= =============================== ================== 6 29 96.0 31 GTTCCCCGCCGCATAGGCGGCTTAGAAAC # Left flank : AGAGAAGTATTTTAGCCATTGGATGCGAGAAGTGAAAAATCTGGTGATTATTGAGCTGGGCGCAGGAACAGTTATTCCAACGGTGCGTAATTTTTCTCAAGGCTATAGCGAGCATTTTAAAGCGCCTTTAATTCGGATTAATCTTAATGAATATCAAACGAATAATGACAGACATCTTGGTCTGCCTTTAGGCGCAAAGGAATCTTTGCAATTTTTGAATAATCTTTTAGAGAATATAGCTAAATGTCTCTGACTCGCATACAACGTTAGCTCGTTTGCCATACTGAGGTTGGCTATCTGTGGTTCGTCAGTTCATATGCAAGCTAACCCCATTCAGCTATAATCCAAACAATCATTTTTGATCATAAAACCCTTTTTTCCCCGCTCTTTAACAACCGAATAAAAAACAAATACTTGCAACAAGCAAAAAAACAAAAGGTCAACCAACAAAAAACCTTTAAAACCCTTGTGGCAAGTGCATCAAATCGAATAAAATTCGA # Right flank : CTTCGTTGTGCGAGCTGAATAAATCCTTTATGTTCATGCAGCTTTTCATAAGAGAGAAAGTACAAAAGAACACATTGAAAATGCAGGACATCAAATCCTTTGGTTACCAGCCTACAGTCTAGACTTAAATCCGATTGAGAAGAAGTGGGCAAAAGTGAAACATATTTGGCGATTATGGAAGATAGATTGTATTGATACTTTGTTTAAAGTCTGCATGCAATGTTAAGTTTTAACTATATAGCTGAATGAGTTTAGATTGCATACAAATCAACTAGCTACAGACAGCACACATTAGTACGGAAAGACGCTCAAATCCTGTATGCGAGTTAAAGACATTCAGCCATATATCTCATTTAGCAAAAAATTTTAGCTAATTCAAATCAGATAATCAAAAACCTTACTAAAGAAACCCTGATTAACTCGTAAACCAAAAATATTTTATTACTCAATCAAATCAGACAGATATTTTTGCCTTTCTACAGGAAAAGCGTTTAGTCAAT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCGCCGCATAGGCGGCTTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //