Array 1 815094-819677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082203.1 Streptococcus suis strain NJ3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 815094 36 100.0 30 .................................... CGACTCCATTCATCTTCAGCATTTTCATTG 815160 36 100.0 30 .................................... AAAATTTTAGTTGCTACTGTTCCTGTCTTT 815226 36 100.0 30 .................................... AATACTCGTCTAGCTTTAACTTCCGCCCCT 815292 36 100.0 30 .................................... AACAACTCGGATTGGCGTTTGACTTGTTAC 815358 36 100.0 30 .................................... AGTTGACGGAAAGCCGTTAAAATCTAAACT 815424 36 100.0 30 .................................... GTCCGCTGTTAAATCTGTTGCGGGATATTC 815490 36 100.0 30 .................................... TTGTCTATCCTGTCCAGCTCGCTCTTGTTT 815556 36 100.0 30 .................................... GATGCTCTAGGTGTGTGACTACCATCACCA 815622 36 100.0 30 .................................... GACTGCTGGTAACATATTTAAAAACAGTGC 815688 36 100.0 30 .................................... TGTTGAAAAACCAATCAAATCGGTAACAAT 815754 36 100.0 30 .................................... ATGAAATCGGCTGGGCTTCCATTCGCTATT 815820 36 100.0 30 .................................... TAGATATTGACCCTAGAGAGTTCGGAAAAT 815886 36 100.0 30 .................................... GATGAATTATTCGAAGATGATGTGATATTA 815952 36 100.0 30 .................................... GATAATAGCTTCAAATCCTTCAGGCAATTC 816018 36 100.0 30 .................................... AATTAAAACAGACATATCGTATCCTTTCTA 816084 36 100.0 30 .................................... CAAGAGAGTCATCAGCTTTCTTAGCCTCGT 816150 36 100.0 30 .................................... TCTTACGAACTACCCTAGACCCTGCCACCG 816216 36 100.0 30 .................................... TCATTGGACTTAAAAGAGACCTCATCCATA 816282 36 100.0 30 .................................... TGCTGACCTGGAGGTCCTGCTAATCCTCTA 816348 36 100.0 30 .................................... TTATCCAAACGATTCTCCAAGTTATCCATT 816414 36 100.0 30 .................................... TACTACTGGCTACTCAGACTGTACGTGGAT 816480 36 100.0 30 .................................... AGTCAAACCGATTTAATAGCTAAAGATTTC 816546 36 100.0 30 .................................... CCCATAGTTTGGAAACCAGCACCAAGACCT 816612 36 100.0 30 .................................... CTTTCAAAGTAATCAATCTGTCTGTTTAAT 816678 36 100.0 30 .................................... AACAAACCTATATCATTATCCAGGAGGCAA 816744 36 100.0 30 .................................... TTCTGTTTTTTGACGGGGTCGCTGATAACT 816810 36 100.0 30 .................................... GGATGTCCGTTGCGATTAACTGGAATGATG 816876 36 100.0 30 .................................... GACCAGTAGCACGCCTAGTTTATCAGTCAT 816942 36 100.0 30 .................................... ATGAAATTCGACGAAAATGGCAACCCAGAT 817008 36 100.0 30 .................................... GATGGCTTGGACAACATATTCTGCTCGGAA 817074 36 100.0 30 .................................... ACGAGGCAATAAAGTTTAGAGATAAACTCT 817140 36 100.0 30 .................................... AGAACGTGTAAAATCGATTACTAGTTATAT 817206 36 100.0 30 .................................... TTGACAAAGTGATGACTGATGTAGCTATGA 817272 36 100.0 30 .................................... CTCACTCAAAGATAGGACAATCACAGTCCT 817338 36 100.0 30 .................................... ATGCTATCATGCACAAAGACCGTTCTATCT 817404 36 100.0 30 .................................... TATATCGTAAACATTTTATTGTATAATATA 817470 36 100.0 30 .................................... CTATCTTGTAAATCTGTTTAGATGAAAGAT 817536 36 100.0 30 .................................... TAGATGAACTGTTCCTTGAACGTAAGCTTT 817602 36 100.0 30 .................................... AATGTCGAACGCTTGATGAAAGAGAAATAC 817668 36 100.0 30 .................................... TTACGATTGGCATAGTTATTATCAATATAA 817734 36 100.0 30 .................................... TTATTATCAATCAATTTCCTAACCTCCTAA 817800 36 100.0 30 .................................... ATTGTTTAACAATGTAGCTCCGTTTGTTGC 817866 36 100.0 30 .................................... GCTGAAGAAGCGCAGAAATACTCACAGTTT 817932 36 100.0 30 .................................... ATCAATAACCATTGCAAATAAATCTGAGTG 817998 36 100.0 30 .................................... ACAATAATCATGTCCTTTCCGCCTGGCATA 818064 36 100.0 30 .................................... TATGGCAAGATTGACCAGAAGCTAAAAGAA 818130 35 97.2 28 .............................-...... TTTTGGAAAAAAGCGACTAAGCAAATAA 818193 36 100.0 30 .................................... TTTAACTATCTAAATTCTTTCTATAGAGGT 818259 36 100.0 30 .................................... GCACGGCCATAGACTGAAGCGTCGAAAGCA 818325 36 100.0 30 .................................... CAAGTGATTATAATGAAACTTTTTCAGCAA 818391 36 100.0 30 .................................... TGGTATCTTCGGCAAAAATTCGGCTGCCAA 818457 36 100.0 30 .................................... TCAGAAACCGTTGATATATAAAGGATTTCA 818523 36 100.0 30 .................................... CTTCATTTTCGGCGAGCTGCAACATTGCTC 818589 35 97.2 30 ..........................-......... ATACTATGATAGAGTGGTGTTAGATTATAA 818654 36 100.0 30 .................................... GACGCTTGGTACCTGAGATGTCCATGACGT 818720 36 100.0 30 .................................... TATTAAAGAAATAAGAGAGAGTTTCGGCAT 818786 35 97.2 30 ..........................-......... GCACGGCCATAGACTGAAGCGTCGAAAGCA 818851 36 100.0 30 .................................... CAAGTGATTATAATGAAACTTTTTCAGCAA 818917 36 100.0 30 .................................... TGGTATCTTCGGCAAAAATTCGGCTGCCAA 818983 36 100.0 30 .................................... TCAGAAACCGTTGATATATAAAGGATTTCA 819049 36 100.0 30 .................................... CTTCATTTTCGGCGAGCTGCAACATTGCTC 819115 36 100.0 30 .................................... TGGCCAGAGCGTAACATTCCCCATTGCCTA 819181 36 100.0 29 .................................... TTTAAATTCTTTTCTGGTTTAAACTCTAG 819246 36 100.0 30 .................................... GATAGCCGCTGAATGTATCGACAATGTACT 819312 36 100.0 30 .................................... CTACTGACTGTGGGCCAATAACAACCGCTA 819378 36 100.0 30 .................................... ACGTCTAGTTAACAAACAATACTTGATTGT 819444 36 100.0 30 .................................... CAATATAGGACGTTTAGCTGTCGCATATCG 819510 36 94.4 30 ..................................CA TAAGATAGCACGGAAAGGAGGGAGGGCTAT 819576 36 100.0 30 .................................... CAAGAGGGTGGTAGTGGAAATCCAGTTGCG 819642 35 88.9 0 .........................A.-.A.....G | T [819675] ========== ====== ====== ====== ==================================== ============================== ================== 70 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCATTAGGGGTCAAAATTGAAACTATCAGCGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : GCAGTAAGTTTATAAAGGAAGGAGGGGAGTAACTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATTACTAAAGAGATTGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTAATAGGTCTTCCTGATTAAAGTCTGCATTTATATCATTGTTTTAATTTTTTATAATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGAGGGCTTGCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //